28. Ketosis and Urea Poisoning
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Fatty Acid Biosynthesis
BI/CH 422/622 ANABOLISM OUTLINE: Photosynthesis Carbon Assimilation – Calvin Cycle Carbohydrate Biosynthesis in Animals Gluconeogenesis Glycogen Synthesis Pentose-Phosphate Pathway Regulation of Carbohydrate Metabolism Anaplerotic reactions Biosynthesis of Fatty Acids and Lipids Fatty Acids contrasts Diversification of fatty acids location & transport Eicosanoids Synthesis Prostaglandins and Thromboxane acetyl-CoA carboxylase Triacylglycerides fatty acid synthase ACP priming Membrane lipids 4 steps Glycerophospholipids Control of fatty acid metabolism Sphingolipids Isoprene lipids: Cholesterol ANABOLISM II: Biosynthesis of Fatty Acids & Lipids 1 ANABOLISM II: Biosynthesis of Fatty Acids & Lipids 1. Biosynthesis of fatty acids 2. Regulation of fatty acid degradation and synthesis 3. Assembly of fatty acids into triacylglycerol and phospholipids 4. Metabolism of isoprenes a. Ketone bodies and Isoprene biosynthesis b. Isoprene polymerization i. Cholesterol ii. Steroids & other molecules iii. Regulation iv. Role of cholesterol in human disease ANABOLISM II: Biosynthesis of Fatty Acids & Lipids Lipid Fat Biosynthesis Catabolism Fatty Acid Fatty Acid Degradation Synthesis Ketone body Isoprene Utilization Biosynthesis 2 Catabolism Fatty Acid Biosynthesis Anabolism • Contrast with Sugars – Lipids have have hydro-carbons not carbo-hydrates – more reduced=more energy – Long-term storage vs short-term storage – Lipids are essential for structure in ALL organisms: membrane phospholipids • Catabolism of fatty acids –produces acetyl-CoA –produces reducing -
Lipid Deposition and Metabolism in Local and Modern Pig Breeds: a Review
animals Review Lipid Deposition and Metabolism in Local and Modern Pig Breeds: A Review Klavdija Poklukar 1 , Marjeta Candek-Potokarˇ 1,2 , Nina Batorek Lukaˇc 1 , Urška Tomažin 1 and Martin Škrlep 1,* 1 Agricultural Institute of Slovenia, Ljubljana SI-1000, Slovenia; [email protected] (K.P.); [email protected] (M.C.-P.);ˇ [email protected] (N.B.L.); [email protected] (U.T.) 2 University of Maribor, Faculty of Agriculture and Life Sciences, HoˇceSI-2311, Slovenia * Correspondence: [email protected]; Tel.: +386-(0)1-280-52-34 Received: 17 February 2020; Accepted: 29 February 2020; Published: 3 March 2020 Simple Summary: Intensive selective breeding and genetic improvement of relatively few pig breeds led to the abandonment of many low productive local pig breeds. However, local pig breeds are more highly adapted to their specific environmental conditions and feeding resources, and therefore present a valuable genetic resource. They are able to deposit more fat and have a distinct lipogenic capacity, along with a better fatty acid composition than modern breeds. Physiological, biochemical and genetic mechanisms responsible for the differences between fatty and lean breeds are still not fully clarified. The present paper highlights important associations to better understand the underlying mechanisms of lipid deposition in subcutaneous and intramuscular fat between fatty and lean breeds. Abstract: Modern pig breeds, which have been genetically improved to achieve fast growth and a lean meat deposition, differ from local pig breeds with respect to fat deposition, fat specific metabolic characteristics and various other properties. The present review aimed to elucidate the mechanisms underlying the differences between fatty local and modern lean pig breeds in adipose tissue deposition and lipid metabolism, taking into consideration morphological, cellular, biochemical, transcriptomic and proteomic perspectives. -
Activation of Pparα by Fatty Acid Accumulation Enhances Fatty Acid Degradation and Sulfatide Synthesis
Tohoku J. Exp. Med., 2016, 240, 113-122PPARα Activation in Cells due to VLCAD Deficiency 113 Activation of PPARα by Fatty Acid Accumulation Enhances Fatty Acid Degradation and Sulfatide Synthesis * * Yang Yang,1, Yuyao Feng,1, Xiaowei Zhang,2 Takero Nakajima,1 Naoki Tanaka,1 Eiko Sugiyama,3 Yuji Kamijo4 and Toshifumi Aoyama1 1Department of Metabolic Regulation, Shinshu University Graduate School of Medicine, Matsumoto, Nagano, Japan 2Department of Neurosurgery, The Second Hospital of Hebei Medical University, Shijiazhuang, Hebei, China 3Department of Nutritional Science, Nagano Prefectural College, Nagano, Nagano, Japan 4Department of Nephrology, Shinshu University School of Medicine, Matsumoto, Nagano, Japan Very-long-chain acyl-CoA dehydrogenase (VLCAD) catalyzes the first reaction in the mitochondrial fatty acid β-oxidation pathway. VLCAD deficiency is associated with the accumulation of fat in multiple organs and tissues, which results in specific clinical features including cardiomyopathy, cardiomegaly, muscle weakness, and hepatic dysfunction in infants. We speculated that the abnormal fatty acid metabolism in VLCAD-deficient individuals might cause cell necrosis by fatty acid toxicity. The accumulation of fatty acids may activate peroxisome proliferator-activated receptor (PPAR), a master regulator of fatty acid metabolism and a potent nuclear receptor for free fatty acids. We examined six skin fibroblast lines, derived from VLCAD-deficient patients and identified fatty acid accumulation and PPARα activation in these cell lines. We then found that the expression levels of three enzymes involved in fatty acid degradation, including long-chain acyl-CoA synthetase (LACS), were increased in a PPARα-dependent manner. This increased expression of LACS might enhance the fatty acyl-CoA supply to fatty acid degradation and sulfatide synthesis pathways. -
Fatty Acid Degradation Monounsaturated Fatty Acids
BI/CH 422/622 OUTLINE: OUTLINE: Lipid Degradation (Catabolism) Protein Degradation (Catabolism) FOUR stages in the catabolism of lipids: Digestion Mobilization from tissues (mostly adipose) Inside of cells hormone regulated Protein turnover specific lipases Ubiquitin glycerol Proteosome Activation of fatty acids Amino-Acid Degradation Fatty-acyl CoA Synthetase Transport into mitochondria carnitine Oxidation rationale Saturated FA 4 steps dehydrogenation hydration oxidation thiolase energetics Unsaturated FA Odd-chain FA Ketone Bodies Other organelles Fatty Acid Degradation Monounsaturated Fatty Acids cis trans During first of five ⦚ ⦚ ⦚ ⦚ ⦚ remaining cycles, acyl- CoA dehydrogenase step is skipped, resulting in 1 fewer FADH2. 1 Fatty Acid Degradation Energy from Fatty Acid Catabolism TABLE 17-1a Yield of ATP during Oxidation of One Molecule of PalmitoylOleoyl--CoA to CO2 and H2O Number of NADH or Number of ATP a Enzyme catalyzing the oxidation step FADH2 formed ultimately formed β Oxidation Acyl-CoA dehydrogenase 7 FADH2 10.5 β-Hydroxyacyl-CoA dehydrogenase 8 NADH 20 Citric acid cycle 35 à87.5 ATP Isocitrate dehydrogenase 9 NADH 22.5 α-Ketoglutarate dehydrogenase 9 NADH 22.5 Succinyl-CoA synthetase 16 9b Succinate dehydrogenase à24 ATP 9 FADH2 13.5 Malate dehydrogenase 9 NADH 22.5 Total 120.5 – 2 = 118.5* aThese calculations assume that mitochondrial oxidative phosphorylation produces 1.5 ATP per FADH2 oxidized and 2.5 ATP per NADH oxidized. bGTP produced directly in this step yields ATP in the reaction catalyzed by nucleoside diphosphate kinase (p. 516). *These 2 ”ATP” equivalents were expended in the activation by Fatty acyl–CoA synthetase. Fatty Acid Degradation Oxidation of Polyunsaturated Fatty Acids Results in 1 fewer FADH2 after isomerization, as the acyl-CoA dehydrogenase step is skipped and goes right to the hydratase. -
Investigations of Anaplerosis from Propionyl-Coa
INVESTIGATIONS OF ANAPLEROSIS FROM PROPIONYL-COA PRECURSORS AND FATTY ACID OXIDATION IN THE BRAIN OF VLCAD AND CONTROL MICE by XIAO WANG Submitted in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Thesis Advisor: Henri Brunengraber, M.D., Ph.D. Department of Nutrition CASE WESTERN RESERVE UNIVERISITY May, 2009 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of _____________________________________________________ candidate for the ______________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. Table of Contents Table of Contents.……………………………………………………………….………i List of Table...……………………………………………………………………………v List of Figures.……………………………………………………………………..….…vi Acknowledgements …………………………………..…………………………..….…xi List of Abbreviations……………………………………………………………………xii Abstract………………………………………………………………………………....xvi CHAPTER 1: Substrate Utilization In The Brain 1.1 Overview of brain energy metabolism..…….………………………………….....1 1.2 The blood-brain barrier ……..……….…….………………………………….…... 2 1.3 Utilization of glucose in the brain………………………………………………..…4 1.3.1 -
Amino Acid Degradation
BI/CH 422/622 OUTLINE: OUTLINE: Protein Degradation (Catabolism) Digestion Amino-Acid Degradation Inside of cells Protein turnover Dealing with the carbon Ubiquitin Fates of the 29 Activation-E1 Seven Families Conjugation-E2 nitrogen atoms in 20 1. ADENQ Ligation-E3 AA: Proteosome 2. RPH 9 ammonia oxidase Amino-Acid Degradation 18 transamination Ammonia 2 urea one-carbon metabolism free transamination-mechanism to know THF Urea Cycle – dealing with the nitrogen SAM 5 Steps Carbamoyl-phosphate synthetase 3. GSC Ornithine transcarbamylase PLP uses Arginino-succinate synthetase Arginino-succinase 4. MT – one carbon metabolism Arginase 5. FY – oxidase vs oxygenase Energetics Urea Bi-cycle 6. KW – Urea Cycle – dealing with the nitrogen 7. BCAA – VIL Feeding the Urea Cycle Glucose-Alanine Cycle Convergence with Fatty acid-odd chain Free Ammonia Overview Glutamine Glutamate dehydrogenase Overall energetics Amino Acid A. Concepts 1. ConvergentDegradation 2. ketogenic/glucogenic 3. Reactions seen before The SEVEN (7) Families B. Transaminase (A,D,E) / Deaminase (Q,N) Family C. Related to biosynthesis (R,P,H; C,G,S; M,T) 1.Glu Family a. Introduce oxidases/oxygenases b. Introduce one-carbon metabolism (1C) 2.Pyruvate Family a. PLP reactions 3. a-Ketobutyric Family (M,T) a. 1-C metabolism D. Dedicated 1. Aromatic Family (F,Y) a. oxidases/oxygenases 2. a-Ketoadipic Family (K,W) 3. Branched-chain Family (V,I,L) E. Convergence with Fatty Acids: propionyl-CoA 29 N 1 Amino Acid Degradation • Intermediates of the central metabolic pathway • Some amino acids result in more than one intermediate. • Ketogenic amino acids can be converted to ketone bodies. -
Multiple Acyl-Coa Dehydrogenase Deficiency Kills Mycobacterium Tuberculosis in Vitro and 2 During Infection
bioRxiv preprint doi: https://doi.org/10.1101/2021.04.19.440201; this version posted April 19, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Multiple acyl-CoA dehydrogenase deficiency kills Mycobacterium tuberculosis in vitro and 2 during infection 3 Tiago Beites1, Robert S Jansen2#, Ruojun Wang1, Adrian Jinich2, Kyu Rhee1,2,, Dirk Schnappinger1, Sabine 4 Ehrt1. 5 Affiliations 6 1 Department of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065 USA. 7 2 Division of Infectious Diseases, Department of Medicine, Weill Cornell Medical College, New York, NY, 8 10065, USA. 9 # Current affiliation: Department of Microbiology, Radboud University, 6525 AJ, Nijmegen, the 10 Netherlands 11 bioRxiv preprint doi: https://doi.org/10.1101/2021.04.19.440201; this version posted April 19, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 12 ABSTRACT 13 The human pathogen Mycobacterium tuberculosis (Mtb) devotes a significant fraction of its genome to 14 fatty acid metabolism. Although Mtb depends on host fatty acids as a carbon source, fatty acid - 15 oxidation is mediated by genetically redundant enzymes, which has hampered the development of 16 antitubercular drugs targeting this metabolic pathway. -
Fatty Acid Oxidation Participates of the Survival to Starvation, Cell Cycle Progression and Differentiation in the Insect Stages
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.08.425864; this version posted January 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 2 3 4 Fatty acid oxidation participates of the survival to starvation, cell cycle progression 5 and differentiation in the insect stages of Trypanosoma cruzi 6 7 Rodolpho Ornitz Oliveira Souza¹, Flávia Silva Damasceno¹, Sabrina Marsiccobetre1, Marc Biran2, 8 Gilson Murata3, Rui Curi4, Frédéric Bringaud5, Ariel Mariano Silber¹* 9 10 11 ¹ University of São Paulo, Laboratory of Biochemistry of Tryps – LaBTryps, Department of 12 Parasitology, Institute of Biomedical Sciences – São Paulo, SP, Brazil 13 14 2 Centre de Résonance Magnétique des Systèmes Biologiques (RMSB), Université de Bordeaux, 15 CNRS UMR-5536, Bordeaux, France 16 17 3 University of São Paulo, Department of Physiology, Institute of Biomedical Sciences – São Paulo, 18 SP, Brazil 19 20 4 Cruzeiro do Sul University, Interdisciplinary Post-Graduate Program in Health Sciences - São Paulo, 21 SP, Brazil 22 23 5 Laboratoire de Microbiologie Fondamentale et Pathogénicité (MFP), Université de Bordeaux, 24 CNRS UMR-5234, Bordeaux, France 25 26 27 28 *Corresponding author 29 E-mail: [email protected] (AMS) 30 31 32 33 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.08.425864; this version posted January 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
PNU-91325 Increases Fatty Acid Synthesis from Glucose and Mitochondrial Long Chain Fatty Acid Degradation
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Springer - Publisher Connector Metabolomics, Vol. 2, No. 1, March 2006 (Ó 2006) DOI: 10.1007/s11306-006-0015-5 21 PNU-91325 increases fatty acid synthesis from glucose and mitochondrial long chain fatty acid degradation: a comparative tracer-based metabolomics study with rosiglitazone and pioglitazone in HepG2 cells George G. Harrigana,*, Jerry Colcab,Sa´ndor Szalmac, and La´szlo´G. Borosd aGlobal High Throughput Screening (HTS), Pfizer Corporation, Chesterfield, MO 63017, USA bGenomics and Biotechnology, Pfizer Corporation, Chesterfield, MO 63017, USA cMeTa Informatics, San Diego, CA 92130, USA dSIDMAP, LLC, Los Angeles, CA 90064, USA Received 13 September 2005; accepted 4 January 2006 The mitochondrial membrane protein termed ‘‘mitoNEET,’’ is a putative secondary target for insulin-sensitizing thiazolid- inedione (TZD) compounds but its role in regulating metabolic flux is not known. PNU-91325 is a thiazolidinedione derivative which exhibits high binding affinity to mitoNEET and lowers cholesterol, fatty acid and blood glucose levels in animal models. In this study we report the stable isotope-based dynamic metabolic profiles (SIDMAP) of rosiglitazone, pioglitazone and PNU-91325 in a dose-matching, dose-escalating study. One and 10 lM concentrations 1 and 10 lM drug concentrations were introduced into 13 13 HepG2 cells in the presence of either [1,2) C2]-D-glucose or [U) C18]stearate, GC/MS used to determine positional tracer incorporation (mass isotopomer analysis) into multiple metabolites produced by the Krebs and pentose cycles, de novo fatty acid synthesis, long chain fatty acid oxidation, chain shortening and elongation. -
Fatty Acid Synthase Beta Dehydratase in the Lipid Biosynthesis Pathway Is Required for Conidiogenesis, Pigmentation and Appresso
International Journal of Molecular Sciences Article Fatty Acid Synthase Beta Dehydratase in the Lipid Biosynthesis Pathway Is Required for Conidiogenesis, Pigmentation and Appressorium Formation in Magnaporthe oryzae S6 Vaanee Sangappillai and Kalaivani Nadarajah * Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia; UKM Bangi 43600, Malaysia; [email protected] * Correspondence: [email protected]; Tel.: +603-89213465 Received: 5 August 2020; Accepted: 23 September 2020; Published: 30 September 2020 Abstract: Lipid biosynthesis produces glycerol, which is important in fueling turgor pressure necessary for germination and penetration of plant host by fungi. As the relationship between pathogenicity and the lipid biosynthetic pathway is not fully understood, we have elucidated the role of the fatty acid synthase beta subunit dehydratase (FAS1) gene in lipid biosynthesis. The FAS1 gene was silenced through homologous double crossover in Magnaporthe oryzae strain S6 to study the effect on lipid biosynthesis. The vegetative growth of Dfas1 mutants show the highest drop on oleic acid (between 10 and 50%), while the mycelial dry weight of mutants dropped significantly on all media. Conidiation of FAS1 mutants show a ~10- and ~5-fold reduction on oatmeal and Potato Dextrose Agar (PDA), respectively. Mutants formed mycelium that were mildly pigmented, indicating that the deletion of FAS1 may have affected melanin biosynthesis. Biochemical and gene expression studies concluded that the fatty acid degradation pathway might have been interrupted by FAS1 deletion. FAS1 mutants showed no enzyme activity on glucose or olive oil, suggesting that the mutants may lack functional peroxisomes and be defective in β-oxidation of fatty acids, hence explaining the reduced lipid deposits in the spores. -
Lecture 13 — FATTY ACID & CHOLESTEROL BIOSYNTHESIS
Metabolism Lecture 13 — FATTY ACID & CHOLESTEROL BIOSYNTHESIS — Restricted for students enrolled in MCB102, UC Berkeley, Spring 2008 ONLY Bryan Krantz: University of California, Berkeley MCB 102, Spring 2008, Metabolism Lecture 13 Reading: Chs. 19 & 21 of Principles of Biochemistry, “Oxidative Phosphorylation & Photophosphorylation.” & “Lipid Biosynthesis.” ATP SYNTHESIS VIA THE PMF Uncouplers. Let us consider the action of respiratory inhibitors and uncouplers, like DNP: Metabolism Lecture 13 — FATTY ACID & CHOLESTEROL BIOSYNTHESIS — Restricted for students enrolled in MCB102, UC Berkeley, Spring 2008 ONLY ATP SYNTHESIS AND PMF ARE COUPLED How? Peter Mitchell did not have the answer for this one. This is the last energy transduction step: i.e., the transmembrane electrical/chemical potential (PMF) is converted to store the energy in the high energy phosphate ester linkage of ATP. Efraim Racker purified the FoF1 ATP synthase component of the electron transport chain in the 1960s. Curious results were obtained. ● They could reconstitute the electron transport chain in liposome vesicles. ● When a water-soluble component (F1) was stripped off ATP synthesis was uncoupled. ● From this result they concluded, that Fo—the other membrane-embedded component—was a proton translocating pore. ● Adding back F1 allowed the Fo to be blocked and ATP synthesis could resume. FoF1 ATP synthase stabilizes the formation of ATP from ADP and Pi. ● The enzyme has a strong binding site for ATP. ● The Keq’ for ATP formation in the enzyme bound state is ~1. ● The E●ATP complex is stable, and release of ATP will be the struggle. Metabolism Lecture 13 — FATTY ACID & CHOLESTEROL BIOSYNTHESIS — Restricted for students enrolled in MCB102, UC Berkeley, Spring 2008 ONLY ATP RELEASE REQUIRES PMF The energy diagram does not anticipate a means to get the ATP out of the E●ATP complex. -
Lecture 9 - Fatty Acid Metabolism
Lecture 9 - Fatty Acid Metabolism Chem 454: Regulatory Mechanisms in Biochemistry University of Wisconsin-Eau Claire Introduction Fatty acids play several important roles: Text Building blocks for phopsholipids and glycolipids Target proteins to membranes High energy source of fuel Fatty acid derivatives are used as hormones and intracellular messengers 2 Introduction Overview of Text fatty acid synthesis 3 1. Triglycerides Triglycerides are a highly concentrated store Text of energy 9 kcal/g vs 4 kcal/g for glycogen Glycogen is also highly hydrated, 2 g H2O/g glycogen O C O CH2 O C O CH O C O CH2 Triacylglycerol 4 1.1 Pancreatic Lipases Dietary triacylglycerols must be broken down Text before being absorbed by the intestines. Bile salts, which act as detergents, are used to solublize the triacylglycerols 5 1.1 Pancreatic Lipases Dietary triacylglycerols must be broken down Text before being absorbed by the intestines. Bile salts, which act as detergents, are used to solublize the triacylglycerols 6 1.1 Pancreatic Lipases Pancreatic lipases hydrolyze the ester bonds Text of the triacylglycerols while in the micelles. 7 1.1 Chylomicrons In the intestinal mucosal cells, the fatty acids and Text monoacylglycerides are resynthesized into triacylglycerides and packaged into chylomicrons. 8 2. Utilization of Fatty Acids as Fuel Three stages of processing Text Triglycerols are degraded to fatty acids and glycerol in the adipose tissue and transported to other tissues. Fatty acids are activated and transported into the mitochondria. Fatty acids are broken down into two-carbon acetyl–CoA units and fed into the citric acid cycle.