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Data Availability Statement For the integrity of scientific research and publication, JOL adapts and implements the Policy Type 3 of data availability in the framework of Springer-Nature. Manuscripts submitted to JOL must conclude an additional section of Data Availability Statement after the Acknowledgement or before the References. The features of Policy Type 3 are shown in the table below: Features for Policy Type 3 Feature Type 3 1. Data sharing via repositories encouraged ✓ 2. Data citation permitted ✓ 3. Publisher helpdesk ✓ 4. Public data deposition and dataset identifier checks for specific types of data ✓ 5. Data availability statements ✓ 6. Public data deposition and dataset identifier required and verified ✓ 7. Data citations checked ✓ 8. Peer review of data ✓ 9. Data repository integrated with manuscript submission ✓ Blue = optional/encouraged; service and guidance available to authors but they are not obliged to use it Red = policy or service must be used by the editor or authors and, where applicable, checks are in place to ensure this happens Data availability statements for Policy Type 3 should include information on where data supporting the results reported in the article can be found including, where applicable, hyperlinks to publicly archived datasets analyzed or generated during the study. By data we mean the minimal dataset that would be necessary to interpret, replicate and build upon the findings reported in the article. We recognize it is not always possible to share research data publicly, for instance when individual privacy could be compromised, and in such instances data availability should still be stated in the manuscript along with any conditions for access. Data availability statements can take one of the following forms (or a combination of more than one if required for multiple datasets): 1. The datasets generated during and/or analyzed during the current study are available in the [NAME] repository, [PERSISTENT WEB LINK TO DATASETS] 2. The datasets generated during and/or analyzed during the current study are not publicly available due [REASON WHY DATA ARE NOT PUBLIC] but are available from the corresponding author on reasonable request. 3. The datasets during and/or analyzed during the current study available from the corresponding author on reasonable request. 4. Data sharing not applicable to this article as no datasets were generated or analyzed during the current study. 5. All data generated or analyzed during this study are included in this published article [and its supplementary information files]. 6. The data that support the findings of this study are available from [third party name] but restrictions apply to the availability of these data, which were used under license for the current study, and so are not publicly available. Data are however available from the authors upon reasonable request and with permission of [third party name].

Updated on 2016-11-28 File B9: Data availability statement

Example and template data availability statements In the absence of specific instructions from a journal editor, authors can use or adapt the statement(s) above, and in the table below, that is most appropriate for their manuscript. Several statements may need to be combined depending on the nature of the research. The table below provides links to articles in the stated journal(s) that have used or adapted the statement.

Statement type/description Template/example text Published example Data generated during the [Data type e.g. “Sequence”] data that support the BMC Biology study are subject to a data findings of this study have been deposited in Nature sharing mandate and [repository name e.g. “GenBank”] with the Communications available in a public [primary] accession codes [list accession codes repository that does not issue with links e.g. “KP253039”] datasets with DOIs Data available in a public The [data type] data that support the findings of Nature (institutional, general or this study are available in [repository name e.g Communications subject specific) repository “figshare”] with the identifier(s) [data DOI(s) e.g. GigaScience that issues datasets with “doi:10.6084/m9.figshare.1499292_D8”][Referenc Microbiome DOIs (non-mandated e number] deposition) Data available in a public The [data type e.g. “Snow pack depth”] data that Nature (institutional, general or support the findings of this study are available Geoscience subject specific) repository in/from [repository/resource name e.g. Palgrave that does not issue datasets “GlobSnow”], [hyperlink to dataset(s)/data source Communications with DOIs (non-mandated e.g. “http://www.globsnow.info/”] deposition) Data available on request The data that support the findings of this study are Nature from the authors available from the corresponding author upon Communications reasonable request BMC Medicine Authors can confirm that all The authors declare that [the/all other] data BMC Medicine relevant data are included in supporting the findings of this study are available the article and/or its within the article [and its supplementary supplementary information information files] files Data are available on request The data that support the findings of this study are BMC Medicine due to privacy or other available on request from the corresponding author restrictions [author initials]. The data are not publicly available due to [state restrictions e.g. “them containing information that could compromise research participant privacy/consent”] Data subject to third party The data that support the findings of this study are Palgrave restrictions available from [third party name] but restrictions Communications apply to the availability of these data, which were used under license for the current study, and so are not publicly available. Data are however available from the authors upon reasonable request and with permission of [third party name] Dataset(s) derived from The datasets analyzed during the current study are Palgrave public resources and made available in the [repository name] repository [data Communications available with the article identifiers e.g. doi:10.7910/DVN/HEWGDD] [Reference number]. These datasets were derived from the following public domain resources: [list resources and their URLs] Data generated at a central, Raw data were generated at the [facility name] Nature Physics large scale facility – large-scale facility. Derived data supporting the

Updated on 2016-11-28 File B9: Data availability statement common practice in some findings of this study are available from the physical sciences corresponding author upon request Data sharing not applicable Data sharing not applicable to this article as no Palgrave – for example if an article datasets were generated or analyzed during the Communications describes entirely theoretical current study research

Some examples of data availability statement 1. Sequence data that support the findings of this study have been deposited in the European Nucleotide Archive with the primary accession code http://www.ebi.ac.uk/ena/data/view/PRJEB13140. Accession codes: Sequence data that support the findings of this study have been deposited in the European Nucleotide Archive with the primary accession code PRJEB13140. — Nature Communications — 2. Data sharing not applicable to this article as no datasets were generated or analysed during the current study. — Palgrave Communications — 3. The original Miseq data of the native microbiome and the experimental microbiome is available from the European Nucleotide Archive under the accessions ERP014530 and ERP014569, respectively. Bacterial 16S ribosomal RNA gene sequences and fungal ribosomal internal transcribed spacer sequences for the 24 bacterial and six fungal isolates, respectively, which were characterized in more detail, are available from GenBank under the accessions KU902420-KU902449. The ribosomal sequences for all other isolates are available from GenBank under accession numbers KX079706–KX079868. Phenotypic data for population size analysis and antifungal analysis is provided in Additional file 1: Tables S1-17, S1-18, S1- 20, S1-22, and S1-24. The bacterial, fungal, and nematode isolates studied herein are available from the Schulenburg lab on request. — BMC Biology —

Acknowledgement and Disclamation: The contents of this article are taken from Springer-Nature websites. Please find more details there: 1. Research Data Policy Types http://www.springernature.com/gp/group/data-policy/policy-types 2. Data Availability Statements – guidance for authors and editors http://www.springernature.com/gp/group/data-policy/data-availability-statements

Updated on 2016-11-28 http://www.springer.com/journal/343