Self-Fertility and Uni-Directional Mating-Type Switching in Ceratocystis Coerulescens, a Filamentous Ascomycete
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Evolution of Genetic Systems in Filamentous Ascomycetes
Evolution of Genetic Systems in Filamentous Ascomycetes Evolutie van genetische systemen in hyphenvormende zakjeszwammen 0000 0513 3836 Promotor: dr. R.F. Hoekstra hoogleraar in de populatie- en kwantitatieve genetica fjtfoiißi f ßin Maarten J. Nauta Evolution of Genetic Systems in Filamentous Ascomycetes Proefschrift ter verkrijging van de graad van doctor in de landbouw- en milieuwetenschappen op gezag van de rector magnificus, dr. C.M. Karssen, in het openbaar te verdedigen op woensdag 12januar i 1994 des namiddags te vier uur in de Aula van de Landbouwuniversiteit te Wageningen. 15 0 S(p^ZJ> These investigations were supported by the Netherlands Organization for Scientific Research (N.W.O.). BibUt/FHEEK LAMDbOirWUNIVERSITEJi. WAGE NINGE N CIP-GEGEVENS KONINKLIJKE BIBLIOTHEEK, DEN HAAG Nauta, Maarten J. Evolution of genetic systems in filamentous ascomycetes / Maarten J. Nauta. - [ S.l. : s.n.]. -111 . Thesis Wageningen. - With ref. - With summary in Dutch. ISBN 90-5485-199-6 Subject headings: population genetics / ascomycetes. omslagontwerp: Ernst van Cleef foto omslag: Barrages tussen verschillende stammen van Podospora anserina als gevolg van vegetatieve incompatibiliteit. (met dank aan Inge Haspels) aan mijn ouders Voorwoord Dit proefschrift is het resultaat van vier jaar onderzoek, verricht bij de vakgroep Erfelijkheidsleer van de Landbouwuniversiteit in Wageningen. In zekere zin valt zo'n proefschrift te vergelijken met een levend wezen. Uit de genetica is bekend dat de verschijningsvorm van elk levend wezen tot stand komt door een combinatie van erfelijke aanleg en invloeden uit de omgeving. Voor een proefschrift geldt eigenlijk hetzelfde: Zowel het werk van de auteur, als de bijdragen van zijn omgeving zijn onontbeerlijk om tot een verschijningsvorm te komen. -
Sexual Selection in Fungi
Sexual selection in Fungi Bart P. S. Nieuwenhuis Thesis committee Thesis supervisor Prof. dr. R.F. Hoekstra Emeritus professor of Genetics (Population and Quantitative Genetics) Wageningen University Thesis co-supervisor Dr. D.K. Aanen Assistant professor at the Laboratory of Genetics Wageningen University Other members Prof. dr. J. B. Anderson, University of Toronto, Toronto, Canada Prof. dr. W. de Boer, NIOO, Wageningen and Wageningen University Prof. dr. P.G.L. Klinkhamer, Leiden University, Leiden Prof. dr. H.A.B. Wösten, Utrecht Univesity, Utrecht This research was conducted under the auspices of the C.T. de Wit Graduate School for Production Ecology and Resource Conservation (PE&RC) Sexual selection in Fungi Bart P. S. Nieuwenhuis Thesis submittted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. dr. M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Friday 21 September 2012 at 4 p.m. in the Aula. Bart P. S. Nieuwenhuis Sexual selection in Fungi Thesis, Wageningen University, Wageningen, NL (2012) With references, with summaries in Dutch and English ISBN 978-94-6173-358-0 Contents Chapter 1 7 General introduction Chapter 2 17 Why mating types are not sexes Chapter 3 31 On the asymmetry of mating in the mushroom fungus Schizophyllum commune Chapter 4 49 Sexual selection in mushroom-forming basidiomycetes Chapter 5 59 Fungal fidelity: Nuclear divorce from a dikaryon by mating or monokaryon regeneration Chapter 6 69 Fungal nuclear arms race: experimental evolution for increased masculinity in a mushroom Chapter 7 89 Sexual selection in the fungal kingdom Chapter 8 109 Discussion: male and female fitness Bibliography 121 Summary 133 Dutch summary 137 Dankwoord 147 Curriculum vitea 153 Education statement 155 6 Chapter 1 General introduction Bart P. -
Classifications of Fungi
Chapter 24 | Fungi 675 Sexual Reproduction Sexual reproduction introduces genetic variation into a population of fungi. In fungi, sexual reproduction often occurs in response to adverse environmental conditions. During sexual reproduction, two mating types are produced. When both mating types are present in the same mycelium, it is called homothallic, or self-fertile. Heterothallic mycelia require two different, but compatible, mycelia to reproduce sexually. Although there are many variations in fungal sexual reproduction, all include the following three stages (Figure 24.8). First, during plasmogamy (literally, “marriage or union of cytoplasm”), two haploid cells fuse, leading to a dikaryotic stage where two haploid nuclei coexist in a single cell. During karyogamy (“nuclear marriage”), the haploid nuclei fuse to form a diploid zygote nucleus. Finally, meiosis takes place in the gametangia (singular, gametangium) organs, in which gametes of different mating types are generated. At this stage, spores are disseminated into the environment. Review the characteristics of fungi by visiting this interactive site (http://openstaxcollege.org/l/ fungi_kingdom) from Wisconsin-online. 24.2 | Classifications of Fungi By the end of this section, you will be able to do the following: • Identify fungi and place them into the five major phyla according to current classification • Describe each phylum in terms of major representative species and patterns of reproduction The kingdom Fungi contains five major phyla that were established according to their mode of sexual reproduction or using molecular data. Polyphyletic, unrelated fungi that reproduce without a sexual cycle, were once placed for convenience in a sixth group, the Deuteromycota, called a “form phylum,” because superficially they appeared to be similar. -
The Diversity of Plant Sex Chromosomes Highlighted Through Advances in Genome Sequencing
G C A T T A C G G C A T genes Review The Diversity of Plant Sex Chromosomes Highlighted through Advances in Genome Sequencing Sarah Carey 1,2 , Qingyi Yu 3,* and Alex Harkess 1,2,* 1 Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL 36849, USA; [email protected] 2 HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA 3 Texas A&M AgriLife Research, Texas A&M University System, Dallas, TX 75252, USA * Correspondence: [email protected] (Q.Y.); [email protected] (A.H.) Abstract: For centuries, scientists have been intrigued by the origin of dioecy in plants, characterizing sex-specific development, uncovering cytological differences between the sexes, and developing theoretical models. Through the invention and continued improvements in genomic technologies, we have truly begun to unlock the genetic basis of dioecy in many species. Here we broadly review the advances in research on dioecy and sex chromosomes. We start by first discussing the early works that built the foundation for current studies and the advances in genome sequencing that have facilitated more-recent findings. We next discuss the analyses of sex chromosomes and sex-determination genes uncovered by genome sequencing. We synthesize these results to find some patterns are emerging, such as the role of duplications, the involvement of hormones in sex-determination, and support for the two-locus model for the origin of dioecy. Though across systems, there are also many novel insights into how sex chromosomes evolve, including different sex-determining genes and routes to suppressed recombination. We propose the future of research in plant sex chromosomes should involve interdisciplinary approaches, combining cutting-edge technologies with the classics Citation: Carey, S.; Yu, Q.; to unravel the patterns that can be found across the hundreds of independent origins. -
Heterothallism and Potential Hybridization Events Inferred For
Du et al. IMA Fungus (2020) 11:4 https://doi.org/10.1186/s43008-020-0027-1 IMA Fungus RESEARCH Open Access Heterothallism and potential hybridization events inferred for twenty-two yellow morel species Xi-Hui Du1* , Dongmei Wu2, Heng Kang3*, Hanchen Wang1, Nan Xu1, Tingting Li1 and Keliang Chen1 Abstract Mating-type genes are central to sexual reproduction in ascomycete fungi and result in the establishment of reproductive barriers. Together with hybridization, they both play important roles in the evolution of fungi. Recently, potential hybridization events and MAT genes were separately found in the Elata Clade of Morchella. Herein, we characterized the MAT1–1-1 and MAT1–2-1 genes of twenty-two species in the Esculenta Clade, another main group in the genus Morchella, and proved heterothallism to be the predominant mating strategy among the twenty-two species tested. Ascospores of these species were multi-nuclear and had many mitochondrial nucleoids. The number of ascospore nuclei might be positively related with the species distribution range. Phylogenetic analyses of MAT1–1-1, MAT1–2-1, intergenic spacer (IGS), and partial histone acetyltransferase ELP3 (F1) were performed and compared with the species phylogeny framework derived from the ribosomal internal transcribed spacer region (ITS) and translation elongation factor 1-alpha (EF1-a) to evaluate their species delimitation ability and investigate potential hybridization events. Conflicting topologies among these genes genealogies and the species phylogeny were revealed and hybridization events were detected between several species. Different evolutionary patterns were suggested for MAT genes between the Esculenta and the Elata Clades. Complex evolutionary trajectories of MAT1–1-1, MAT1–2-1, F1 andIGSintheEsculentaCladewerehighlighted.Thesefindings contribute to a better understanding of the importance of hybridization and gene transfer in Morchella andespeciallyfortheappearanceofreproductivemodesduring its evolutionary process. -
Perithecial Ascomycetes from the 400 Million Year Old Rhynie Chert: an Example of Ancestral Polymorphism
Mycologia, 97(1), 2005, pp. 269±285. q 2005 by The Mycological Society of America, Lawrence, KS 66044-8897 Perithecial ascomycetes from the 400 million year old Rhynie chert: an example of ancestral polymorphism Editor's note: Unfortunately, the plates for this article published in the December 2004 issue of Mycologia 96(6):1403±1419 were misprinted. This contribution includes the description of a new genus and a new species. The name of a new taxon of fossil plants must be accompanied by an illustration or ®gure showing the essential characters (ICBN, Art. 38.1). This requirement was not met in the previous printing, and as a result we are publishing the entire paper again to correct the error. We apologize to the authors. T.N. Taylor1 terpreted as the anamorph of the fungus. Conidioge- Department of Ecology and Evolutionary Biology, and nesis is thallic, basipetal and probably of the holoar- Natural History Museum and Biodiversity Research thric-type; arthrospores are cube-shaped. Some peri- Center, University of Kansas, Lawrence, Kansas thecia contain mycoparasites in the form of hyphae 66045 and thick-walled spores of various sizes. The structure H. Hass and morphology of the fossil fungus is compared H. Kerp with modern ascomycetes that produce perithecial as- Forschungsstelle fuÈr PalaÈobotanik, Westfalische cocarps, and characters that de®ne the fungus are Wilhelms-UniversitaÈt MuÈnster, Germany considered in the context of ascomycete phylogeny. M. Krings Key words: anamorph, arthrospores, ascomycete, Bayerische Staatssammlung fuÈr PalaÈontologie und ascospores, conidia, fossil fungi, Lower Devonian, my- Geologie, Richard-Wagner-Straûe 10, 80333 MuÈnchen, coparasite, perithecium, Rhynie chert, teleomorph Germany R.T. -
Fungal Cannons: Explosive Spore Discharge in the Ascomycota Frances Trail
MINIREVIEW Fungal cannons: explosive spore discharge in the Ascomycota Frances Trail Department of Plant Biology and Department of Plant Pathology, Michigan State University, East Lansing, MI, USA Correspondence: Frances Trail, Department Abstract Downloaded from https://academic.oup.com/femsle/article/276/1/12/593867 by guest on 24 September 2021 of Plant Biology, Michigan State University, East Lansing, MI 48824, USA. Tel.: 11 517 The ascomycetous fungi produce prodigious amounts of spores through both 432 2939; fax: 11 517 353 1926; asexual and sexual reproduction. Their sexual spores (ascospores) develop within e-mail: [email protected] tubular sacs called asci that act as small water cannons and expel the spores into the air. Dispersal of spores by forcible discharge is important for dissemination of Received 15 June 2007; revised 28 July 2007; many fungal plant diseases and for the dispersal of many saprophytic fungi. The accepted 30 July 2007. mechanism has long been thought to be driven by turgor pressure within the First published online 3 September 2007. extending ascus; however, relatively little genetic and physiological work has been carried out on the mechanism. Recent studies have measured the pressures within DOI:10.1111/j.1574-6968.2007.00900.x the ascus and quantified the components of the ascus epiplasmic fluid that contribute to the osmotic potential. Few species have been examined in detail, Editor: Richard Staples but the results indicate diversity in ascus function that reflects ascus size, fruiting Keywords body type, and the niche of the particular species. ascus; ascospore; turgor pressure; perithecium; apothecium. 2 and 3). Each subphylum contains members that forcibly Introduction discharge their spores. -
MEIOSIS and RECOMBINATION in SORDARIA FIMICOLA Introduction
MEIOSIS AND RECOMBINATION IN SORDARIA FIMICOLA Introduction: In ascomycete fungi, a form of meiosis occurs in which the products of meiosis order themselves within a fruiting body according to the physical separation and segregation of chromatids during the meiotic process. This is covered in some detail on pages 150-152 (including Figures 4.26 and 4.27) in Hartl and Jones, Essential Genetics. You should study these pages before beginning this module. As described, ordered tetrad analysis provides a way to measure the genetic map distance between a gene and the centromere of the chromosome on which that gene resides. That is what you will do over the next two weeks in this laboratory. I. Natural history and Life Cycle of Sordaria fimicola Sordaria fimicola is an ascomycete fungi that can be found growing in rotting vegetation and animal dung (in fact, the name Sordaria fimicola means "filthy dung dweller"). Sordaria and another ascomycete, the common bread fungus Neurospora crassa (Fig. 4.26), have been used as model systems for studying the process of chromosome exchange (crossing-over) because of their reproductive characteristics. The life cycle of Sordaria is representative of the ascomycetes (although there are substantial differences in the details among species). The individual fungus begins as a haploid ascospore. The ascospore germinates to form hyphae (singular = hypha), which are long filaments comprised of haploid cells. These hyphae grow and extend throughout the nutrient source (dung or rotting vegetation in nature, nutrient medium in the laboratory situation) and digest it by means of enzymes secreted by the cells. Nutrients are then absorbed into the cells. -
The Genetics of Sex: Exploring Differences
COMMENTARY: GENETICS OF SEX The Genetics of Sex: Exploring Differences Michelle N. Arbeitman,*,1 Artyom Kopp,† Mark L. Siegal,‡ and Mark Van Doren§ *Department of Biomedical Sciences, College of Medicine, Florida State University, Tallahassee, Florida 32306, †Department of Evolution and Ecology, University of California, Davis, California 95616, ‡Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003, and §Biology Department, Johns Hopkins University, Baltimore, Maryland 21218 In this commentary, Michelle Arbeitman et al., examine the previously existed. The fundamental genetic differences be- topic of the Genetics of Sex as explored in this month’s tween the sexes and how they arise continue to fascinate issues of GENETICS and G3: Genes|Genomes|Genetics.These biologists, and the results from genetic explorations of these inaugural articles are part of a joint Genetics of Sex col- topics are featured in an ongoing collection of articles published lection (ongoing) in the GSA journals. in GENETICS and G3: Genes|Genomes|Genetics. The inaugural articles address some of these topics. Two EX differences affect nearly every biological process. studies focus on the biology of reproduction: the transition These differences may be seen in obvious morpholog- S from predominantly sexual reproduction to asexuality in ical traits, such as deer antlers, beetle horns, and the sex- fungi (Solieri et al. 2014) and self-incompatibility in plants specific color patterns of birds and butterflies. Reproductive (Leducq et al. 2014). Two other articles examine differences behaviors may also be quite different between the sexes and in the evolution of sex chromosomes: Blackmon and Demuth include elaborate courtship displays, parental care of progeny, (2014) look at the evolutionary turnover of sex chromosomes and aggressive or territorial behaviors. -
The Identification of Yeasts from Clinical Material
Proceedings of the Iowa Academy of Science Volume 81 Number Article 9 1974 The Identification of eastsY from Clinical Material Leila J. Walker Wadsworth Hospital Center Marguerite R. Luecke Wadsworth Hospital Center Let us know how access to this document benefits ouy Copyright ©1974 Iowa Academy of Science, Inc. Follow this and additional works at: https://scholarworks.uni.edu/pias Recommended Citation Walker, Leila J. and Luecke, Marguerite R. (1974) "The Identification of eastsY from Clinical Material," Proceedings of the Iowa Academy of Science, 81(1), 14-22. Available at: https://scholarworks.uni.edu/pias/vol81/iss1/9 This Research is brought to you for free and open access by the Iowa Academy of Science at UNI ScholarWorks. It has been accepted for inclusion in Proceedings of the Iowa Academy of Science by an authorized editor of UNI ScholarWorks. For more information, please contact [email protected]. Walker and Luecke: The Identification of Yeasts from Clinical Material 14 The Identification of Yeasts from Clinical Material LEILA J. WALKER and MARGUERITE R. LUECKE1 WALKER, LEILA J., and MARGUERITE R. LUECKE (Laboratory Ser medically important sexual stages and imperfect forms, and char vice, Research Service, Veterans Administration, Wadsworth Hos acteristics of the sexual stages in clinical material, are described. pital Center, Los Angeles, California 90073). The Identification Included in this report is a guide to yeast identification which of Yeasts from Clinical Material. Proc. Iowa Acad. Sci. 81 (1): relies on the Luecke plate, a modified Dalmau plate. 14-22, 1974. INDEX DESCRIPTORS: Yeast Identification, Non-Filamentous Fungi, A workable, practical scheme for the identification of yeasts iso Mycology in Medicine. -
Advanced Gene Mapping in Eukaryotes
RUSSMC07 2/7/05 11:54 AM Page 165 7 Advanced Gene Mapping in Eukaryotes Ordered tetrads of the fungus, Neurospora Crassa. PRINCIPAL POINTS • Tetrad analysis is a mapping technique that can be be used to determine gene order and map distances used to map the genes of certain haploid eukaryotic between genes. organisms in which the products of a single meiosis— • Due to both ethical and practical issues, human the meiotic tetrad—are contained within a single genes cannot be mapped by making crosses and structure. In these situations, the map distance analyzing progeny. A number of approaches are between genes is computed by analyzing the relative used to determine the linkage relationships proportion of tetrad types, rather than by analyzing between human genes, including analyzing individual progeny. pedigree data recombinationally and physically • In organisms in which the meiotic tetrads are locating genes on chromosomes by molecularly arranged linearly, it is easy to map the distance aided methods. of a gene from its centromere. • Crossing-over can also occur during mitosis, although i SPECIAL TECHNIQUES ARE AVAILABLE FOR at a frequency much lower than during meiosis. As in constructing linkage maps for eukaryotic organisms meiosis, mitotic crossing-over occurs at a four-strand beyond the standard genetic mapping crosses. In this stage. chapter you will learn about these techniques. Then, in the iActivity, you can apply what you’ve learned and further • For organisms amenable to such analysis, such as the explore one of the advanced mapping techniques. fungus Aspergillus nidulans, mitotic recombination can iActivity 165 RUSSMC07 1/26/05 12:47 PM Page 166 166 Chapter 7 Advanced Gene Mapping in Eukaryotes In the previous chapter, we considered the classical princi- Go to the iActivity Mapping Genes by Tetrad i ples for mapping genes in eukaryotes by means of recombi- Analysis on your CD-ROM and assume the role nation analysis. -
Using Caenorhabditis to Explore the Evolution of the Germ Line
Chapter 14 Using Caenorhabditis to Explore the Evolution of the Germ Line Eric S. Haag and Qinwen Liu Abstract Germ cells share core attributes and homologous molecular components across animal phyla. Nevertheless, abrupt shifts in reproductive mode often occur that are mediated by the rapid evolution of germ cell properties. Studies of Caenorhabditis nematodes show how the otherwise conserved RNA-binding pro- teins (RBPs) that regulate germline development and differentiation can undergo surprisingly rapid functional evolution. This occurs even as the narrow biochemical tasks performed by the RBPs remain constant. The biological roles of germline RBPs are thus highly context-dependent, and the inference of archetypal roles from isolated models in different phyla may therefore be premature. Keywords RNA-binding protein • Translation • PUF proteins • GLD-1 14.1 Comparative Biology of Germline Development 14.1.1 Evolutionary Overview In this chapter, we seek to put attributes of the C. elegans germ line covered by other authors in this volume in an evolutionary context. Two major themes run through it. First, C. elegans germ cells share many features with those of other animals and are thus a useful model system for inferring general principles. Second, we discuss how comparisons with other closely related nematodes offer an important window onto the role germ cells play in the evolution of important new reproductive adaptations. E. S. Haag (*) • Q. Liu Department of Biology , University of Maryland , Building 144 , College Park , MD 20742 , USA e-mail: [email protected] T. Schedl (ed.), Germ Cell Development in C. elegans, Advances in Experimental 405 Medicine and Biology 757, DOI 10.1007/978-1-4614-4015-4_14, © Springer Science+Business Media New York 2013 406 E.S.