Purine Metabolism in Acholeplasma Laidlawii B: Novel Ppi- Dependent Nucleoside Kinase Activity VICTOR V

Total Page:16

File Type:pdf, Size:1020Kb

Purine Metabolism in Acholeplasma Laidlawii B: Novel Ppi- Dependent Nucleoside Kinase Activity VICTOR V JOURNAL OF BACTERIOLOGY, July 1984, p. 265-270 Vol. 159, No. 1 0021-9193/84/070265-06$02.00/0 Copyright ©3 1984, American Society for Microbiology Purine Metabolism in Acholeplasma laidlawii B: Novel PPi- Dependent Nucleoside Kinase Activity VICTOR V. TRYON AND DENNIS POLLACK* Department of Medical Microbiology and Immunology, The Ohio State University, Columbuts, Ohio 43210 Received 21 February 1984/Accepted 12 April 1984 Acholeplasma Iaidlawii B-PG9 was examined for 16 cytoplasmic enzymes with activity for purine salvage and interconversion. Phosphoribosyltransferase activities for adenine, guanine, xanthine, and hypoxanthine were shown. Adenine, guanine, xanthine, and hypoxanthine were ribosylated to their nucleoside. Adenosine, inosine, xanthosine, and guanosine were converted to their base. No ATP-dependent phosphorylation of nucleosides to mononucleotides was found. However, PPi-dependent phosphorylation of adenosine, inosine, and guanosine to AMP, inosine monophosphate, and GMP, respectively, was detected. Nucleotidase activity for AMP, inosine monophosphate, xanthosine monophosphate, and GMP was also found. Interconversion of GMP to AMP was detected. Enzyme activities for the interconversion of AMP to GMP were not detected. Therefore, A. laidlawii B-PG9 cannot synthesize guanylates from adenylates or inosinates. De novo synthesis of purines was not detected. This study demonstrates that A. Iaidlawii B-PG9 has the enzyme activities for the salvage and limited interconversion of purines and, except for purine nucleoside kinase activity, is similar to Mycoplasma mycoides subsp. mycoides. This is the first report of a PPi-dependent nucleoside kinase activity in any organism. The only members of the class Mollicutes for which the phosphate ([8-14C]XMP), 56 mCi/mmol. [8-14C]inosine 5'- pathways of purine salvage and interconversion have been monophosphate ([8-14C]IMP) (59 mCi/mmol) was purchased comprehensively studied and described is Mycoplasma my- from Amersham Corp. (Arlington Heights, Ill). Lecithin coides subsp. mycoides (27, 28). Activities of some purine (vegetable) was purchased from Mann Research Labora- salvage enzymes in Mollicutes have been reported previous- tories (New York, N.Y.). Other chemicals were purchased ly (12, 13, 16, 22, 23, 27, 28, 34). Hamet et al. (12) have from Sigma Chemical Co. (St. Louis, Mo.), unless otherwise examined purine salvage but not interconversion enzyme specified. activities in five Mycoplasma species and in Acholeplasma Organisms and culture conditions. A. laidlawii B-PG9 was laidlawii A-PG8. Although, Mclvor and Kenny did not test grown without serum in our modification of Edward medium for specific enzyme activities, they found that Mycoplasma containing penicillin G (100 U ml-1), as described previously species and A. laidlawii were able to incorporate radiola- (2). Bacillus subtilis 60015, which lacks purine nucleoside beled purine and pyrimidine bases and nucleosides into RNA kinase activity (9), was obtained from Ernest Freese (Na- (23). tional Institute of Neurological and Communicative Disor- We have reported that A. laidlawii B-PG9 maintains an ders and Stroke, Bethesda, Md.) and grown in a defined adenylate energy charge comparable to that of Escherichia medium as described by Endo et al. (9). E. coli ATCC 25922, coli and other procaryotes and synthesizes more ATP per which has purine nucleoside kinase activity, was grown in milligram (dry weight) than E. coli (2, 3). To determine the Edward medium without penicillin. pathways by which ATP and other purine 5'-monophos- All cultures were incubated at 37°C. Starter cultures were phates are synthesized in A. laidlawii B, we examined 16 inoculated into temperature-equilibrated media to 1 to 5% enzyme activities involved in purine salvage and intercon- (vol/vol) and incubated statically. Cells were harvested in version and the incorporation of [U-_4C]glycine included in their mid-log phase of growth at 6 to 24 h. the growth medium into purine bases. To detect de novo synthesis of purines, A. laidlawii was grown in tryptose broth containing, per liter, tryptose (Difco MATERIALS AND METHODS Laboratories, Detroit, Mich.), 25 g; NaCl, 5 g; and Tris, 5 g Chemicals. The following radiolabeled compounds were (pH 7.5). After autoclaving, we added sterile glucose solu- purchased from Research Products International Corp. (Mt. tion to 1% (vol/vol) and a liposome suspension to 0.5% (vol/ Prospect. Ill.): [8-14C]adenine ([8-14C]ADE), 50 mCi/mmol; vol). The liposome suspension was composed of phosphati- [8-14C]adenosine ([8-14C]ADO), 47 mCi/mmol; [8-14C]guano- dylcholine-cholesterol (1:1) and prepared as described by sine ([8-14C]GUO), 42.8 mCi/mmol; and [U-14C]GMP, 450 Cluss et al. (8). The liposome suspension was added because mCi/mmol. The following were purchased from ICN Phar- it stimulated growth and increased the cell yield. The con- maceuticals, Inc. (Irvine, Calif.): [8- 4C]AMP, 58 mCi/ centration of adenylates in the tryptose medium was 0.3 ,ug mmol; [$-14C]ATP, 51 mCi/mmol; [8-14C]guanine ([8- ml-1 and about half that in modified Edward medium 14C]GUA), 51 mCi/mmol; and [U-14C]glycine, 92 mCi/mmol. without serum. The following were purchased from Moravek Biochemicals Preparation of cell extracts. Cell-free preparations were (Brea, Calif.): [8-14C]hypoxanthine ([8-14C]HX), 56 mCi/ made essentially as described previously (30). A. laidlawii mmol; [8-14C]inosine ([8-14C]INO), 56 mCi/mmol; [8- cells were harvested by centrifugation at 9,000 x g at 4°C for 14C]xanthosine ([8-14C]Xo), 56 mCi/mmol; [8-'4C]xanthine 30 min. The cells were washed by centrifugation three times ([8-14C]X), 57 mCi/mmol; and [8-14C]xanthosine 5'-mono- in 200 to 300 volumes of cold kappa-buffer. Washed cells were lysed by hypotonic shock in aqueous diluted (1:20) * Corresponding author. 37°C kappa-buffer by incubation at 37°C for 3 to 10 min. The 265 266 TRYON AND POLLACK J. BACTERIOL. crude lysate was centrifuged at 48,000 x g for 1 h at 4°C. The min. Product mononucleotide was chromatographically sep- supernatant was centrifuged at 250,000 x g for 1 h at 4°C. arated from substrate purine base in solvent A. The supernatant was dialyzed in the cold overnight against (ii) ADO kinase (ATP-adenosine 5'-phosphotransferase; four changes of 100 volumes each of 10 mM N-2-hydroxyeth- EC 2.7.1.20) and nucleoside kinase (ATP-inosine 5'-mono- ylpiperazine-N'-2-ethanesulfonic acid (HEPES; Research phosphotransferase; EC 2.7.1.73) were assayed by the meth- Organics, Cleveland, Ohio) (pH 7.5)-2 mM 2-mercaptoeth- od of Yamada et al. (41). Reaction mixtures contained 50 anol-1 mM MgCl2100 puM phenylmethylsulfonyl fluoride. mM IJEPES (pH 7.4), 1 mM MgCl2, 1 mM ATP, an ATP- This dialyzed cell extract was used immediately for all regenerating system consisting of 2 mM phosphoenolpy- enzyme assays. E. coli and B. subtilis cells were harvested ruvate-0.5 U of pyruvate kinase-[8-14C]ADO for the ADO as described above for A. Iaidlawii. Cell extract of E. coli or kinase and [8-'4C]GUO, [8-'4C]INO, or [8-14C]XO for the B. subtilis was prepared by incubation at 37°C in 1:20 kappa- nucleoside kinase. Incubation time was 6 min. Product buffer with lysozyme (100 ,ug ml-1) for 30 min as described nucleotide was chromatographically separated from sub- by Endo et al. (9). Lysozyme-treated cells were sonicated strate nucleoside in solvent A. ADO kinase and nucleoside (Sonifier Cell Disruptor; Heat Systems, Melville, N.Y.) by kinase utilizing PP, were assayed as for the ATP-dependent three 10-s exposures while on wet ice. Whole and broken kinases, except that 2 to 4 mM sodium PPi (Fischer Certified cells were centrifuged at 15,000 x g for 30 min at 4°C. The A.C.S.; Fischer Scientific Co., Fairborn, N.J.) was substi- cell extract was dialyzed as described above. The dialyzed tuted for ATP, and no ATP-regenerating system was used. cell extract was used immediately for all enzyme assays. In some experimants, we tested for ADO kinase activity Protein was determined by the method of Bradford (4) with with ATP or PP, over the range of 0.1 to 4 mM. In the G-250 dye reagent formulated by Bio-Rad Laboratories preliminary experiments to test for the effect of contaminat- (Richmond, Calif.). ing membrane ATPase, we used these same reaction condi- Enzyme assays. For all assays, reaction mixtures were tions by substituting [8-14C]ATP for the radioactive ADO for incubated at 37°C in a total volume of 0.1 ml. Each reaction up to 30 min of incubation. In these experiments, we used 2 mixture contained 15 to 25 ,umol of radiolabeled substrate. N formic acid-0.5 M LiCl (1:1) to resolve ATP, ADP, and Concentrations of radioactive substrate were adjusted so AMP on polyethyleneimine plates. that greater than 50% of the label remained at the end of the (iii) Purine-nucleoside phosphorylase (purine nucleoside- incubation period. Reactions were started by the addition of Pi ribosyltransferase; EC 2.4.2.1) was assayed. Reaction temperature-equilibrated dialyzed cell extracts containing 10 mixtures for the base to nucleoside conversion contained 50 to 40 ,ug of protein and incubated with shaking. Reactions mM sodium phosphate or HEPES buffer (pH 7.4), 2 mM were terminated by heating at 100°C for 2 min. After MgC92, 4 mM ribose-1-phosphate, and [8-14C]ADE, [8- preliminary study of each assay, we chose an incubation 14C]GUA, [8-14C]HX, or [8-14C]X. For the nucleoside to time which gave the fastest rate of product formation. 14C- base conversion, the reaction mixtures were the same, labeled substrate and product were separated by thin-layer except that [8-14C]ADO, [8-14C]GUO, [8-14C]INO or [8- chromatography on commercial polyethyleneimine plates 14C]XO replaced their respective base.
Recommended publications
  • Nucleotide Metabolism
    NUCLEOTIDE METABOLISM General Overview • Structure of Nucleotides Pentoses Purines and Pyrimidines Nucleosides Nucleotides • De Novo Purine Nucleotide Synthesis PRPP synthesis 5-Phosphoribosylamine synthesis IMP synthesis Inhibitors of purine synthesis Synthesis of AMP and GMP from IMP Synthesis of NDP and NTP from NMP • Salvage pathways for purines • Degradation of purine nucleotides • Pyrimidine synthesis Carbamoyl phosphate synthesisOrotik asit sentezi • Pirimidin nükleotitlerinin yıkımı • Ribonükleotitlerin deoksiribonükleotitlere dönüşümü Basic functions of nucleotides • They are precursors of DNA and RNA. • They are the sources of activated intermediates in lipid and protein synthesis (UDP-glucose→glycogen, S-adenosylmathionine as methyl donor) • They are structural components of coenzymes (NAD(P)+, FAD, and CoA). • They act as second messengers (cAMP, cGMP). • They play important role in carrying energy (ATP, etc). • They play regulatory roles in various pathways by activating or inhibiting key enzymes. Structures of Nucleotides • Nucleotides are composed of 1) A pentose monosaccharide (ribose or deoxyribose) 2) A nitrogenous base (purine or pyrimidine) 3) One, two or three phosphate groups. Pentoses 1.Ribose 2.Deoxyribose •Deoxyribonucleotides contain deoxyribose, while ribonucleotides contain ribose. •Ribose is produced in the pentose phosphate pathway. Ribonucleotide reductase converts ribonucleoside diphosphate deoxyribonucleotide. Nucleotide structure-Base 1.Purine 2.Pyrimidine •Adenine and guanine, which take part in the structure
    [Show full text]
  • Effects of Allopurinol and Oxipurinol on Purine Synthesis in Cultured Human Cells
    Effects of allopurinol and oxipurinol on purine synthesis in cultured human cells William N. Kelley, James B. Wyngaarden J Clin Invest. 1970;49(3):602-609. https://doi.org/10.1172/JCI106271. Research Article In the present study we have examined the effects of allopurinol and oxipurinol on thed e novo synthesis of purines in cultured human fibroblasts. Allopurinol inhibits de novo purine synthesis in the absence of xanthine oxidase. Inhibition at lower concentrations of the drug requires the presence of hypoxanthine-guanine phosphoribosyltransferase as it does in vivo. Although this suggests that the inhibitory effect of allopurinol at least at the lower concentrations tested is a consequence of its conversion to the ribonucleotide form in human cells, the nucleotide derivative could not be demonstrated. Several possible indirect consequences of such a conversion were also sought. There was no evidence that allopurinol was further utilized in the synthesis of nucleic acids in these cultured human cells and no effect of either allopurinol or oxipurinol on the long-term survival of human cells in vitro could be demonstrated. At higher concentrations, both allopurinol and oxipurinol inhibit the early steps ofd e novo purine synthesis in the absence of either xanthine oxidase or hypoxanthine-guanine phosphoribosyltransferase. This indicates that at higher drug concentrations, inhibition is occurring by some mechanism other than those previously postulated. Find the latest version: https://jci.me/106271/pdf Effects of Allopurinol and Oxipurinol on Purine Synthesis in Cultured Human Cells WILLIAM N. KELLEY and JAMES B. WYNGAARDEN From the Division of Metabolic and Genetic Diseases, Departments of Medicine and Biochemistry, Duke University Medical Center, Durham, North Carolina 27706 A B S TR A C T In the present study we have examined the de novo synthesis of purines in many patients.
    [Show full text]
  • Purine and Pyrimidine Biosynthesis
    Biosynthesis of Purine & Pyrimidi ne Introduction Biosynthesis is a multi-step, enzyme-catalyzed process where substrates are converted into more complex products in living organisms. In biosynthesis, simple compounds are modified, converted into other compounds, or joined together to form macromolecules. This process often consists of metabolic pathways. The purines are built upon a pre-existing ribose 5- phosphate. Liver is the major site for purine nucleotide synthesis. Erythrocytes, polymorphonuclear leukocytes & brain cannot produce purines. Pathways • There are Two pathways for the synthesis of nucleotides: 1. De-novo synthesis: Biochemical pathway where nucleotides are synthesized from new simple precursor molecules 2. Salvage pathway: Used to recover bases and nucleotides formed during the degradation of RNA and DNA. Step involved in purine biosynthesis (Adenine & Guanine) • Ribose-5-phosphate, of carbohydrate metabolism is the starting material for purine nucleotide synthesis. • It reacts with ATP to form phosphoribosyl pyrophosphate (PRPP). • Glutamine transfers its amide nitrogen to PRPP to replace pyrophosphate & produce 5- phosphoribosylamine. Catalysed by PRPP glutamyl amidotransferase. • This reaction is the committed. • Phosphoribosylamine reacts with glycine in the presence of ATP to form glycinamide ribosyl 5- phosphate or glycinamide ribotide (GAR).Catalyzed by synthetase. • N10-Formyl tetrahydrofolate donates the formyl group & the product formed is formylglycinamide ribosyl 5-phosphate. Catalyzed by formyltransferase. • Glutamine transfers the second amido amino group to produce formylglycinamidine ribosyl 5- phosphate. Catalyzed by synthetase. • The imidazole ring of the purine is closed in an ATP dependent reaction to yield 5- aminoimidazole ribosyl 5-phosphate. Catalyzed by synthetase. • Incorporation of CO2 (carboxylation) occurs to yield aminoimidazole carboxylate ribosyl 5- phosphate.
    [Show full text]
  • Induced Alterations in the Urine Metabolome in Cardiac Surgery
    www.nature.com/scientificreports OPEN Bretschneider solution- induced alterations in the urine metabolome in cardiac surgery Received: 16 August 2018 Accepted: 1 November 2018 patients Published: xx xx xxxx Cheng-Chia Lee1,3, Ya-Ju Hsieh 2, Shao-Wei Chen3,4, Shu-Hsuan Fu2, Chia-Wei Hsu 2, Chih-Ching Wu 2,5,6, Wei Han7, Yunong Li7, Tao Huan7, Yu-Sun Chang2,6,8, Jau-Song Yu2,9,10, Liang Li7, Chih-Hsiang Chang1,3 & Yi-Ting Chen 1,2,11,12 The development of Bretschneider’s histidine-tryptophan-ketoglutarate (HTK) cardioplegia solution represented a major advancement in cardiac surgery, ofering signifcant myocardial protection. However, metabolic changes induced by this additive in the whole body have not been systematically investigated. Using an untargeted mass spectrometry-based method to deeply explore the urine metabolome, we sought to provide a holistic and systematic view of metabolic perturbations occurred in patients receiving HTK. Prospective urine samples were collected from 100 patients who had undergone cardiac surgery, and metabolomic changes were profled using a high-performance chemical isotope labeling liquid chromatography-mass spectrometry (LC-MS) method. A total of 14,642 peak pairs or metabolites were quantifed using diferential 13C-/12C-dansyl labeling LC-MS, which targets the amine/phenol submetabolome from urine specimens. We identifed 223 metabolites that showed signifcant concentration change (fold change > 5) and assembled several potential metabolic pathway maps derived from these dysregulated metabolites. Our data indicated upregulated histidine metabolism with subsequently increased glutamine/glutamate metabolism, altered purine and pyrimidine metabolism, and enhanced vitamin B6 metabolism in patients receiving HTK.
    [Show full text]
  • NUCLEOTIDE METABOLISM Mark Rush
    NUCLEOTIDE METABOLISM Mark Rush Nucleotides serve various metabolic functions. For example, they are: • Substrates (building blocks) for nucleic acid biosynthesis and repair, • The main storage form of “high energy phosphate”, • Components of many “so-called” co-enzymes (NAD, NADP, FAD, CoA), • Components of many activated metabolic intermediates (such as UDPG, SAM), • Major allosteric effectors (such as AMP, ADP, ATP, GTP), • Major second messengers (such as 3',5' cAMP), and • Precursors for the biosynthesis of a variety of important compounds (such as biopterin and histidine). Nucleotide biochemistry can be treated both as an aspect of nitrogen metabolism, along with such compounds as amino acids and porphyrins, and as an aspect of nucleic acid metabolism. When the focus is on the biosynthesis and degradation of nucleotides, in other words on their turnover, the treatment is similar to that of other nitrogenous compounds. When the focus is on the role of nucleotides in overall nucleic acid metabolism, the treatment is included in molecular biology. Both aspects will be considered here with the major emphasis directed toward relating defects in nucleotide turnover to either metabolic diseases or chemotherapy. I. Nomenclature (pages 11 and 12). II. Overall metabolic pathways (page 4). 1) PRPP synthetase. 2) Nucleoside phosphorylases. 3) Phosphoribosyl transferases. nucleotides - 1 III. Biosynthesis of purines and pyrimidines (pages 5, 6, 8). A minimum amount of time will be spent discussing these pathways in lecture. Please examine them carefully in the text and note that: 1) Purine synthesis begins at the nucleotide level, while pyrimidine synthesis does not. 2) Both syntheses are regulated at their committed steps.
    [Show full text]
  • Comparing Meiothermus Ruber and Myxococcus Xanthus in the Purine Metabolism Pathway Linnea J
    Augustana College Augustana Digital Commons Meiothermus ruber Genome Analysis Project Biology 2-2016 Comparing Meiothermus ruber and Myxococcus xanthus in the Purine Metabolism Pathway Linnea J. Ritchie Augustana College - Rock Island Dr. Lori Scott Augustana College, Rock Island Illinois Follow this and additional works at: http://digitalcommons.augustana.edu/biolmruber Part of the Bioinformatics Commons, Biology Commons, Genetics Commons, Genomics Commons, Molecular Biology Commons, and the Molecular Genetics Commons Recommended Citation Ritchie, Linnea J. and Scott, Dr. Lori. "Comparing Meiothermus ruber and Myxococcus xanthus in the Purine Metabolism Pathway" (2016). Meiothermus ruber Genome Analysis Project. http://digitalcommons.augustana.edu/biolmruber/7 This Student Paper is brought to you for free and open access by the Biology at Augustana Digital Commons. It has been accepted for inclusion in Meiothermus ruber Genome Analysis Project by an authorized administrator of Augustana Digital Commons. For more information, please contact [email protected]. Comparing Meiothermus ruber and Myxococcus xanthus in the Purine Metabolism Pathway Linnea Ritchie Bio-375 Molecular Genetics (Dr. Lori Scott) Background The purine metabolism pathway is an essential part of an organism’s ability to make nucleotides. It is through this pathway that adenine and guanine are made, these molecules later become the bases of nucleotides, which are a key component in DNA (Westby 1974). There are two different routes for purine synthesis: the de novo pathway and the salvage pathway (Berg 2002). During the de novo pathway the purine molecules are essentially built from scratch. While this route uses comparatively simple molecules and amino acids there is a high energy requirement which is why at times the salvage pathway is used instead.
    [Show full text]
  • A Rare Bacterial RNA Motif Is Implicated in the Regulation of the Purf Gene Whose Encoded Enzyme Synthesizes Phosphoribosylamine
    Downloaded from rnajournal.cshlp.org on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press RNA (Report) RNA/2020/077313 Revised A rare bacterial RNA motif is implicated in the regulation of the purF gene whose encoded enzyme synthesizes phosphoribosylamine Sarah N. Malkowski,1 Ruben M. Atilho,2 Etienne B. Greenlee,3 Christina E. Weinberg,3,5 Ronald R. Breaker2,3,4 1Department of Chemistry, Yale University, New Haven, Connecticut 06520-8103, USA 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520-8103, USA 3Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut 06520-8103, USA 4Howard Hughes Medical Institute, Yale University, New Haven, CT 06520-8103, USA 5Current address: Institute for Biochemistry, Leipzig University, Brüderstraße 34, 04103 Leipzig, Germany Corresponding author: Ronald R. Breaker, [email protected]. KEYWORDS: aptamer; gene control; noncoding RNA; PRA; purine; ribose Downloaded from rnajournal.cshlp.org on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press Malkowski et al. and Breaker Candidate PRA Regulatory RNA ABSTRACT The Fibro-purF motif is a putative structured noncoding RNA domain that was discovered previously in species of Fibrobacter by employing comparative sequence analysis methods. An updated bioinformatics search yielded a total of only 30 unique-sequence representatives, exclusively found upstream of the purF gene that codes for the enzyme amidophosphoribosyltransferase. This enzyme synthesizes the compound 5-phospho-D- ribosylamine (PRA), which is the first committed step in purine biosynthesis. The consensus model for Fibro-purF motif RNAs includes a predicted three-stem junction that carries numerous conserved nucleotide positions within the regions joining the stems.
    [Show full text]
  • Fullsubwaymap221.Pdf
    A B C D E F G H I J K L M Aldose reductase Sorbitol dehydrogenase Cholesterol synthesis Glycogen and galactose metabolism (branch point only) (debranching) glucose sorbitol fructose Aromatic amino acid metabolism Purine synthesis Pyrimidine synthesis glycogen (n+1) phenylacetate triiodothyronine (T3) dopaquinone melanin + + thyroxine (T4) (multiple steps) (many cycles) P 4' NADPH NADP NAD NADH acetyl-CoA x2 i Debranching enzyme 3' - α-1,4 bonds Aromatic amino acid 5-phosphoribosyl pyrophosphate (PRPP) HCO B 2' P 3 (branching) Glycogen 6 i (multiple steps) O H O (multiple steps) Tyrosinase O H O 1' 2 2 2 2 B 1 2 3 4 5 6 7 8 9 10 Pentose phosphate pathway Phenylalanine Tyrosine decarboxylase 6 Dopamine B Thiolase phosphorylase -5 -4 -3 -2 -1 0 1 2 3 4 Transaminase 6 glutamine 2 ATP (many cycles) Glycogen Glucose-6-phosphatase Dehydrogenase hydroxylase hydroxylase (DOPA decarboxylase) β-hydroxylase Methyltransferase 10 UDP 4:4 Transferase ATP glutathione (reduced) H O phenyllactate phenylpyruvate phenylalanine tyrosine dihydroxy- dopamine Glutamine PRPP CoA synthase Hexokinase or (in endoplasmic reticulum) 2 2 norepinephrine epinephrine glutamine Carbamoyl 9 1' phenylanine amidotransferase (GPAT) glutamate glycogen (n) Glutathione reductase Glutathione peroxidase + phosphate glycogen (n) -5 -4 -3 -2 -1 0 1 2 3 4 2' 3' 4' glucokinase 8 NADP NADPH glutamate α-ketoglutarate CO2 O H O Glycosyl (4:6) UDP-glucose ADP (L-DOPA) 2 2 synthetase II glutathione (oxidized) 2 H O α-ketoglutarate PPi glutamate acetoacetyl-CoA 7 1 Glucose -1,6-Glucosidase
    [Show full text]
  • Taxonomic Variations in the Gut Microbiome of Gout Patients With
    Méndez‑Salazar et al. Mol Med (2021) 27:50 https://doi.org/10.1186/s10020‑021‑00311‑5 Molecular Medicine RESEARCH ARTICLE Open Access Taxonomic variations in the gut microbiome of gout patients with and without tophi might have a functional impact on urate metabolism Eder Orlando Méndez‑Salazar1,2†, Janitzia Vázquez‑Mellado3, Carlos S. Casimiro‑Soriguer4,5, Joaquin Dopazo4,5,6,7, Cankut Çubuk8, Yessica Zamudio‑Cuevas9, Adriana Francisco‑Balderas9, Karina Martínez‑Flores9, Javier Fernández‑Torres9, Carlos Lozada‑Pérez10, Carlos Pineda11, Austreberto Sánchez‑González12, Luis H. Silveira13, Ana I. Burguete‑García14, Citlalli Orbe‑Orihuela14, Alfredo Lagunas‑Martínez14, Alonso Vazquez‑Gomez15, Alberto López‑Reyes16, Berenice Palacios‑González1* and Gabriela Angélica Martínez‑Nava9† Abstract Objective: To evaluate the taxonomic composition of the gut microbiome in gout patients with and without tophi formation, and predict bacterial functions that might have an impact on urate metabolism. Methods: Hypervariable V3–V4 regions of the bacterial 16S rRNA gene from fecal samples of gout patients with and without tophi (n 33 and n 25, respectively) were sequenced and compared to fecal samples from 53 healthy controls. We explored= predictive =functional profles using bioinformatics in order to identify diferences in taxonomy and metabolic pathways. Results: We identifed a microbiome characterized by the lowest richness and a higher abundance of Phascolarc- tobacterium, Bacteroides, Akkermansia, and Ruminococcus_gnavus_group genera in patients with gout without tophi when compared to controls. The Proteobacteria phylum and the Escherichia-Shigella genus were more abundant in patients with tophaceous gout than in controls. Fold change analysis detected nine genera enriched in healthy controls compared to gout groups (Bifdobacterium, Butyricicoccus, Oscillobacter, Ruminococcaceae_UCG_010, Lach- nospiraceae_ND2007_group, Haemophilus, Ruminococcus_1, Clostridium_sensu_stricto_1, and Ruminococcaceae_ UGC_013).
    [Show full text]
  • Nucleotides, Nucleic Acids: General Information About Structure, Functions and Metabolism
    MINISTRY OF HEALTH OF UKRAINE ZAPORIZHZHIA STATE MEDICAL UNIVERSITY Biological Chemistry Department Nucleotides, Nucleic acids: General Information about Structure, Functions and Metabolism A manual for independent work at home and in class for students of second year study of international faculty Speciality “Medicine” Zaporizhzhia, 2016 1 UDC 577.1(075.8) BBC 28.902я73 N92 The manual was approved on the Central Methodological Council of ZSMU on «____» _______________2016, the protocol №________ Reviewers: Prykhodko O.B., Head of Medical Biology, Parasitology and Genetics Department of Zaporizhzhia State Medical University, doctor of biological science Voskoboynik O.Yu., associate professor of Organic and Bioorganic Chemistry Department of Zaporizhzhia State Medical University, PhD Editors: Dr. Hab., professor Aleksandrova K. V. PhD, assoc. professor Ivanchenko D. G. PhD, assoc. professor Krisanova N. V. Nucleotides, Nucleic acids : General Information about Structure, Functions and Metabolism : a manual for independent work at home and in class for students of second year study of international faculty, speciality ―Medicine‖/ ed. : K. V. Aleksandrova, D. G. Ivanchenko, N. V. Krisanova. – Zaporizhzhia : ZSMU, 2016.- 84 p. This manual is recommended to use for students of International Faculty (the second year of study) for independent work at home and in class. Нуклеотиди, нуклеїнові кислоти : загальне уявлення про структуру, функції та метаболізм : навч. посіб. для самостійної аудиторної та позааудиторної роботи студентів 2 курсу міжнар. ф-ту, спеціальність «Медицина» / ред.. : К. В. Александрова, Д. Г. Іванченко, Н. В. Крісанова. - Запоріжжя : ЗДМУ, 2016. – 84 с. UDC 577.1(075.8) BBC 28.902я73 ©Aleksandrova K.V., IvanchenkoD.G., Krisanova N.V., 2016 ©Zaporizhzhia State Medical University, 2016 2 INTRODUCTION A study of questions for this manual is the basis for learning of all metabolic pathways for nucleotides and nucleic acids.
    [Show full text]
  • 1 Synthesis of C-2 and C-6 Functionalized
    1 SYNTHESIS OF C-2 AND C-6 FUNCTIONALIZED RIBOFURANOSYLPURINE ANALOGUES AS POTENTIAL ANTIVIRAL AGENTS TARGETING INHIBITION OF INOSINE MONOPHOSPHATE DEHYDROGENASE. by Eric Osei-Tutu Bonsu (Under the Direction of Vasu Nair) ABSTRACT IMPDH is a key enzyme in the de novo biosynthesis of purine nucleotides. It catalyzes the conversion of inosine monophosphate (IMP) to xanthosine monophosphate (XMP) using NAD as a cofactor. XMP is successively converted to deoxyguanosine triphosphate (substrate for DNA synthesis) by GMP synthetase, phosphorylating enzymes and ribonucleotide reductase. IMPDH exists in two isoforms, type I and type II. These isoforms have the same size and share 84% homology. The type I isoform is expressed in both normal and rapidly proliferating cells, whereas type II is preferentially upregulated in proliferating cells. Inhibition of IMPDH has anticancer, antiviral, antibacterial and immunosuppressive effects. Three inhibitors of IMPDH are currently in clinical use: ribavirin (a broad spectrum antiviral), mizoribine (immunosuppressant used in Japan) and mycophenolic mofetil (prodrug of mycophenolic acid, US approved immunosuppressant). None of these inhibitors possess significant selectivity against the type II isoform over the type I, hence there are severe side effects. The quest for specific isozyme inhibitors led to the discovery of the potential antiviral activity of certain C-2 functionalized hypoxanthine and C-2, C-6 modified purine systems against HSV1, HSV2, VV, VSV and RSV. 2 Nair and coworkers have synthesized similar congeners, including 2-vinylinosine (broad spectrum antiviral), which is active due to its C-2 vinyl moiety acting as a Michael Acceptor. This dissertation elucidates the design and synthesis of new Michael Acceptor-type nucleosides.
    [Show full text]
  • Amidotransferase and Phosphoribosylpyrophosphate
    Proc. Natl. Acad. Sci. USA Vol. 73, No. 7, pp. 2458-2461, July 1976 Genetics A purine auxotroph deficient in phosphoribosylpyrophosphate amidotransferase and phosphoribosylpyrophosphate aminotransferase activities with normal activity of ribose-5- phosphate aminotransferase (Chinese hamster fibroblasts/isolated defect in phosphoribosylamine synthesis) EDWARD W. HOLMES, GEORGE L. KING, ALBERT LEYVA, AND SARA C. SINGER Departments of Medicine and Biochemistry, Division of Rheumatic and Genetic Diseases, Duke University Medical Center, Durham, North Carolina Communicated by James B. Wyngaarden, April 28,1976 ABSTRACT Three enzyme reactions have been reported rated from P-Rib-P-P amidotransferase on gel filtration to catalyze the synthesis of phosphoribosylamine in eukaryotic chromatography (4). This activity may represent a distinct cells. These activities are glutamine phosphoribosylpyrophos- protein or a subunit of P-Rib-P-P amidotransferase. A third phate (P-Rib-P-F) amidotransferase [amidophosphoribosyl- transferase; 5-phosphoribosylamine: pyrophosphate phospho- enzyme, ammonia ribose-5-phosphate aminotransferase ribostransferase (glutamate-amidating) EC 2.4±2.141 ammonia (Rib-5-P aminotransferase), has also been reported to catalyze P-Rib-P-P aminotransferase, and ammonia ribose5-Iphosphate the synthesis of P-RibN (reaction 3) (2-5). However, the de- aminotransferase. A purine auxotroph derived from a cell line termination of P-RibN in this reaction has required an assay of Chinese hamster fibroblasts was shown to be deficient in coupled with the second enzyme in the purine biosynthetic catalytic activities of glutamine P-Rib-P-P amidotransferase pathway. Since other studies have suggested that P-RibN can and ammonia P-Rib-P-P aminotransferase. Extracts from this cell line had normal ammonia ribose--phosphate aminotrans- be synthesized nonenzymatically from NH3 and Rib-5-P (6-9), ferase activity.
    [Show full text]