BLACK BOX WARNINGS of ANTIBIOTICS: a NARRATIVE REVIEW 1Nehad J
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In Silico Methods for Drug Repositioning and Drug-Drug Interaction Prediction
In silico Methods for Drug Repositioning and Drug-Drug Interaction Prediction Pathima Nusrath Hameed ORCID: 0000-0002-8118-9823 Submitted in total fulfilment of the requirements for the degree of Doctor of Philosophy Department of Mechanical Engineering THE UNIVERSITY OF MELBOURNE May 2018 Copyright © 2018 Pathima Nusrath Hameed All rights reserved. No part of the publication may be reproduced in any form by print, photoprint, microfilm or any other means without written permission from the author. Abstract Drug repositioning and drug-drug interaction (DDI) prediction are two fundamental ap- plications having a large impact on drug development and clinical care. Drug reposi- tioning aims to identify new uses for existing drugs. Moreover, understanding harmful DDIs is essential to enhance the effects of clinical care. Exploring both therapeutic uses and adverse effects of drugs or a pair of drugs have significant benefits in pharmacology. The use of computational methods to support drug repositioning and DDI prediction en- able improvements in the speed of drug development compared to in vivo and in vitro methods. This thesis investigates the consequences of employing a representative training sam- ple in achieving better performance for DDI classification. The Positive-Unlabeled Learn- ing method introduced in this thesis aims to employ representative positives as well as reliable negatives to train the binary classifier for inferring potential DDIs. Moreover, it explores the importance of a finer-grained similarity metric to represent the pairwise drug similarities. Drug repositioning can be approached by new indication detection. In this study, Anatomical Therapeutic Chemical (ATC) classification is used as the primary source to determine the indications/therapeutic uses of drugs for drug repositioning. -
Treating Opportunistic Infections Among HIV-Infected Adults and Adolescents
Morbidity and Mortality Weekly Report Recommendations and Reports December 17, 2004 / Vol. 53 / No. RR-15 Treating Opportunistic Infections Among HIV-Infected Adults and Adolescents Recommendations from CDC, the National Institutes of Health, and the HIV Medicine Association/ Infectious Diseases Society of America INSIDE: Continuing Education Examination department of health and human services Centers for Disease Control and Prevention MMWR CONTENTS The MMWR series of publications is published by the Epidemiology Program Office, Centers for Disease Introduction......................................................................... 1 Control and Prevention (CDC), U.S. Department of How To Use the Information in This Report .......................... 2 Health and Human Services, Atlanta, GA 30333. Effect of Antiretroviral Therapy on the Incidence and Management of OIs .................................................... 2 SUGGESTED CITATION Initiation of ART in the Setting of an Acute OI Centers for Disease Control and Prevention. Treating (Treatment-Naïve Patients) ................................................. 3 Management of Acute OIs in the Setting of ART .................. 4 opportunistic infections among HIV-infected adults and When To Initiate ART in the Setting of an OI ........................ 4 adolescents: recommendations from CDC, the National Special Considerations During Pregnancy ........................... 4 Institutes of Health, and the HIV Medicine Association/ Disease Specific Recommendations .................................... -
Clindamycin with Primaquine Vs. Trimethoprim-Sulfamethoxazole
524 Clindamycin with Primaquine vs. Trimethoprim-Sulfamethoxazole Therapy for Mild and Moderately Severe Pneumocystis carinii Pneumonia in Patients with AIDS: A Multicenter, Double-Blind, Randomized Trial (CTN 004) Emil Toma, Anona Thorne, Joel Singer, Janet Raboud, From the Department of Microbiology and Infectious Diseases, Centre Claude Lemieux, Sylvie Trottier, Michel G. Bergeron, Hospitalier de l'Universite de MontreÂal, the Immunode®ciency Chris Tsoukas, Julian Falutz, Richard Lalonde, Treatment Centre (IDTC), Montreal General Hospital, and the Royal Victoria Hospital, Montreal, and Centre Hospitalier de l'Universite du Christiane Gaudreau, Rachel Therrien, and the QueÂbec, Quebec, Quebec; and the Canadian HIV Trials Network, CTN-PCP Study Group* Vancouver, British Columbia, Canada This double-blind, randomized, multicenter trial compared clindamycin/primaquine (Cm/Prq) Downloaded from https://academic.oup.com/cid/article/27/3/524/280761 by guest on 25 September 2021 with trimethoprim-sulfamethoxazole (TMP-SMZ) as therapy for AIDS-related Pneumocystis carinii pneumonia (PCP). Forty-®ve patients received clindamycin (450 mg four times daily [q.i.d.]) and primaquine (15 mg of base/d); 42 received TMP-SMZ (320 mg/1,600 mg q.i.d. if weight of §60 kg or 240 mg/1,200 mg q.i.d. if weight of õ60 kg) plus placebo primaquine. Overall, the ef®cacy of Cm/Prq was similar to that of TMP-SMZ (success rate, 76% vs. 79%, respectively); Cm/Prq was associated with fewer adverse events (P Å .04), less steroid use (P Å .18), and more rashes (P Å .07). These differences were even greater for patients with PaO2 of ú70 mm Hg (P Å .02, P Å .04, and P Å .02, respectively). -
Integrating Functional GI Observations Into Toxicology Studies
Safety Pharmacology Society Webinar Series: Safety Pharmacology Endpoints: Integration into Toxicology Studies Integrating functional GI observations into toxicology studies Jean-Pierre Valentin, PhD Louise Marks, PhD Drug Safety & Metabolism Translational Safety Alderley Park, Cheshire United Kingdom [email protected] Aims of presentation • Highlight the scope of the problem surrounding GI adverse effects in preclinical and clinical development • Present an overview of the GI system and types of GI adverse effects • Highlight current Regulatory Guidance for assessing GI liability • Discuss what we can do to help to investigate this liability more thoroughly • Summarise the available methods for assessing drug-induced changes to GI function • Describe 3 methods amenable to inclusion on toxicology studies • Describe 4 real life examples of where GI endpoints have been used • Conclusion and discussion ImpactImpact of of adverse adverse effects effects of drugs of by organdrugs function by organthroughout function the pharmaceutical throughout life cycle the pharmaceutical life cycle Phase ‘Nonclinical’ Phase I Phase I-III Phase III/ Post- Post- Marketing Marketing Marketing Information: Causes of Serious ADRs Causes of ADRs on label Serious ADRs Withdrawal from attrition attrition sale Source: Car (2006) Sibille et al. Olson et al. BioPrint® (2006) Budnitz et al. Stevens & Baker (1998) (2000) (2006) (2008) Sample size: 88 CDs stopped 1,015 subjects 82 CDs stopped 1,138 drugs 21,298 patients 47 drugs Cardiovascular: -
DHFR Inhibitors: Reading the Past for Discovering Novel Anticancer Agents
molecules Review DHFR Inhibitors: Reading the Past for Discovering Novel Anticancer Agents Maria Valeria Raimondi 1,*,† , Ornella Randazzo 1,†, Mery La Franca 1 , Giampaolo Barone 1 , Elisa Vignoni 2, Daniela Rossi 2 and Simona Collina 2,* 1 Department of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, via Archirafi 32, 90123 Palermo, Italy; [email protected] (O.R.); [email protected] (M.L.F.); [email protected] (G.B.) 2 Drug Sciences Department, Medicinal Chemistry and Pharmaceutical Technology Section, University of Pavia, via Taramelli 12, 27100 Pavia, Italy; [email protected] (E.V.); [email protected] (D.R.) * Correspondence: [email protected] (M.V.R.); [email protected] (S.C.); Tel.: +390-912-389-1915 (M.V.R.); +390-382-987-379 (S.C.) † These Authors contributed equally to this work. Academic Editors: Simona Collina and Mariarosaria Miloso Received: 25 February 2019; Accepted: 20 March 2019; Published: 22 March 2019 Abstract: Dihydrofolate reductase inhibitors are an important class of drugs, as evidenced by their use as antibacterial, antimalarial, antifungal, and anticancer agents. Progress in understanding the biochemical basis of mechanisms responsible for enzyme selectivity and antiproliferative effects has renewed the interest in antifolates for cancer chemotherapy and prompted the medicinal chemistry community to develop novel and selective human DHFR inhibitors, thus leading to a new generation of DHFR inhibitors. This work summarizes the mechanism of action, chemical, and anticancer profile of the DHFR inhibitors discovered in the last six years. New strategies in DHFR drug discovery are also provided, in order to thoroughly delineate the current landscape for medicinal chemists interested in furthering this study in the anticancer field. -
Pharmaceuticals As Environmental Contaminants
PharmaceuticalsPharmaceuticals asas EnvironmentalEnvironmental Contaminants:Contaminants: anan OverviewOverview ofof thethe ScienceScience Christian G. Daughton, Ph.D. Chief, Environmental Chemistry Branch Environmental Sciences Division National Exposure Research Laboratory Office of Research and Development Environmental Protection Agency Las Vegas, Nevada 89119 [email protected] Office of Research and Development National Exposure Research Laboratory, Environmental Sciences Division, Las Vegas, Nevada Why and how do drugs contaminate the environment? What might it all mean? How do we prevent it? Office of Research and Development National Exposure Research Laboratory, Environmental Sciences Division, Las Vegas, Nevada This talk presents only a cursory overview of some of the many science issues surrounding the topic of pharmaceuticals as environmental contaminants Office of Research and Development National Exposure Research Laboratory, Environmental Sciences Division, Las Vegas, Nevada A Clarification We sometimes loosely (but incorrectly) refer to drugs, medicines, medications, or pharmaceuticals as being the substances that contaminant the environment. The actual environmental contaminants, however, are the active pharmaceutical ingredients – APIs. These terms are all often used interchangeably Office of Research and Development National Exposure Research Laboratory, Environmental Sciences Division, Las Vegas, Nevada Office of Research and Development Available: http://www.epa.gov/nerlesd1/chemistry/pharma/image/drawing.pdfNational -
Immunohistochemical Analysis of P-Glycoprotein Expression in Breast Cancer: Clinical Correlations*
ANNALS OF CLINICAL AND LABORATORY SCIENCE, Vol. 25, No. 1 Copyright © 1995, Institute for Clinical Science, Inc. Immunohistochemical Analysis of P-glycoprotein Expression in Breast Cancer: Clinical Correlations* DAVID A. DECKER, M.D.,t LAURA W. MORRIS, B.S.,$ ALLAN J. LEVINE, M.D.,§ JANE E. PETTINGA, M.D . , 11 JENNIPHER L. GRUDZIEN, B.S.,f and DANIEL H. FARKAS, Ph.D.** Departments of Medicine,t Anatomic Pathology,t and Clinical Pathology,§ William Beaumont Hospital, Royal Oak, MI 48073 and Department of Biology, Oakland University,l! Rochester, MI 48309 and Department of Surgery, William Beaumont Hospital-Troy,U Troy, MI 48098 and Bio-Oncology Laboratory,** Pontiac, MI 48057 ABSTRACT Paraffin-embedded, formalin-fixed tissue (PEFFT) specimens from a subset of breast cancer patients were analyzed by immunohistochemistry to determine whether or not the presence of P-glycoprotein identified che motherapy resistance. Two antibodies, C219 (monoclonal) and Abl (poly clonal), demonstrated appropriate immunostaining. Retrospectively and prospectively, P-glycoprotein expression was determined from PEFFT of 20 breast cancer biopsies (19 patients with locally advanced or metastatic disease). Immunohistochemical staining was graded for number of positive cells (NO to N4) and intensity (10 to 13). The immunostaining N and I of both antibodies were similar. There was no correlation between N, (P = 0.13) or I, (P = 0.67) and chemotherapy response or between N, (P = 0.63) or I, (P = 0.89) and survival. Five patients had residual cancer at repeat biopsy after systemic chemotherapy for locally advanced disease. These specimens had similar N and I as the primary cancer. This assay accurately identifies P-glycoprotein expression in PEFFT and revealed no correlation between expression and chemotherapy response or survival. -
Sexually Transmitted Diseases Treatment Guidelines, 2010
Morbidity and Mortality Weekly Report www.cdc.gov/mmwr Recommendations and Reports December 17, 2010 / Vol. 59 / No. RR-12 Sexually Transmitted Diseases Treatment Guidelines, 2010 department of health and human services Centers for Disease Control and Prevention MMWR CONTENTS The MMWR series of publications is published by the Office of Surveillance, Epidemiology, and Laboratory Services, Centers for Introduction .............................................................................. 1 Disease Control and Prevention (CDC), U.S. Department of Health Methods ................................................................................... 1 and Human Services, Atlanta, GA 30333. Clinical Prevention Guidance ..................................................... 2 STD/HIV Prevention Counseling ............................................... 2 Suggested Citation: Centers for Disease Control and Prevention. [Title]. MMWR 2010;59(No. RR-#):[inclusive page numbers]. Prevention Methods ................................................................ 4 Partner Management .............................................................. 7 Centers for Disease Control and Prevention Reporting and Confidentiality .................................................. 8 Thomas R. Frieden, MD, MPH Special Populations ................................................................... 8 Director Pregnant Women ................................................................... 8 Harold W. Jaffe, MD, MA Adolescents ......................................................................... -
212-253-8881 Immtech and Par
One North End Avenue Suite 1111 New York New York 10282 Telephone: (877) 898-8038 (212) 791-2911 Fax: 212-791-2917 (Amex-IMM) CONTACT: Paul Hendley - 212-253-8881 IMMTECH AND PAR ENTER LICENSING AGREEMENT ON PAFURAMIDINE FOR TREATMENT OF PNEUMOCYSTIS PNEUMONIA IN THE U.S. PCP Most Common Opportunistic Infection in People with HIV New York, NY, June 12, 2007 – Immtech Pharmaceuticals, Inc. (AMEX: IMM) announced today that Immtech has granted an exclusive license to Par Pharmaceutical Companies, Inc. (NYSE: PRX) to commercialize Immtech’s lead oral drug, pafuramidine maleate, in the United States for the treatment of pneumocystis pneumonia (PCP) in AIDS patients. Immtech and Par may also collaborate on efforts to develop pafuramidine as a preventative therapy for patients at risk of developing PCP, including people living with HIV, cancer and other immunosuppressive conditions. According to the terms of the signed agreement, Immtech has received an initial payment of $3 million from Par. An additional $29 million will be paid to Immtech as pafuramidine advances through ongoing Phase III clinical trials and U.S. regulatory review and approval. Immtech will receive royalties on sales. In addition to royalties, Immtech could also receive up to $115 million in additional payments based on sales milestones. Immtech retains the right to co-market pafuramidine in the U.S. “We are delighted to be collaborating with Par to launch pafuramidine,” said Daniel M. Schmitt, Vice President, Licensing and Commercial Development at Immtech. “Par’s recent success with commercializing Megace ES® for AIDS wasting disease demonstrates their clear understanding of the needs of both patients and healthcare providers focused on the treatment of HIV/AIDS. -
A Meta-Analysis of Salvage Therapy for Pneumocystis Carinii Pneumonia
ORIGINAL INVESTIGATION A Meta-analysis of Salvage Therapy for Pneumocystis carinii Pneumonia Raymond A. Smego, Jr, MD, MPH, DTM&H; Shashi Nagar, BSc; Bonnie Maloba, MBBCh; Mirjana Popara, MBBCh Objective: To determine the relative efficacies of alter- (63 patients), trimethoprim-sulfamethoxazole and/or native antipneumocystis agents in human immunodefi- pentamidine (258 patients), aerosolized pentamidine (6 ciency virus (HIV)–infected patients with Pneumocystis patients), atovaquone (3 patients), dapsone (3 pa- carinii pneumonia unresponsive to primary drug treat- tients), a combination product of trimethoprim and dap- ment with a combination product of trimethoprim and sone (2 patients), and trimethoprim-sulfamethoxazole fol- sulfamethoxazole or parenteral pentamidine. lowed by a combination of clindamycin and primaquine phosphate (2 patients). Efficacies of salvage regimens were Methods: Meta-analysis of 27 published clinical drug tri- as follows: clindamycin-primaquine (42 to 44 [88%- als, case series, and case reports involving P carinii pneu- 92%] of 48 patients; P,10−8), atovaquone (4 [80%] of monia. Data extracted included underlying disease, pri- 5), eflornithine hydrochloride (40 [57%] of 70; P,.01), mary antipneumocystis treatment, days of failed primary trimethoprim-sulfamethoxazole (27 [53%] of 51; P,.08), treatment, salvage regimen, use of systemic corticoste- pentamidine (64 [39%] of 164), and trimetrexate (47 roids and antiretroviral drugs, and clinical outcome. [30%] of 159). Results: In 497 patients with microbiologically con- Conclusion: The combination of clindamycin plus pri- firmed P carinii pneumonia (456 with HIV or acquired maquine appears to be the most effective alternative treat- immunodeficiency syndrome), initial antipneumocys- ment for patients with P carinii pneumonia who are un- tis treatment failed and they therefore required alterna- responsive to conventional antipneumocystis agents. -
Stembook 2018.Pdf
The use of stems in the selection of International Nonproprietary Names (INN) for pharmaceutical substances FORMER DOCUMENT NUMBER: WHO/PHARM S/NOM 15 WHO/EMP/RHT/TSN/2018.1 © World Health Organization 2018 Some rights reserved. This work is available under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 IGO licence (CC BY-NC-SA 3.0 IGO; https://creativecommons.org/licenses/by-nc-sa/3.0/igo). Under the terms of this licence, you may copy, redistribute and adapt the work for non-commercial purposes, provided the work is appropriately cited, as indicated below. In any use of this work, there should be no suggestion that WHO endorses any specific organization, products or services. The use of the WHO logo is not permitted. If you adapt the work, then you must license your work under the same or equivalent Creative Commons licence. If you create a translation of this work, you should add the following disclaimer along with the suggested citation: “This translation was not created by the World Health Organization (WHO). WHO is not responsible for the content or accuracy of this translation. The original English edition shall be the binding and authentic edition”. Any mediation relating to disputes arising under the licence shall be conducted in accordance with the mediation rules of the World Intellectual Property Organization. Suggested citation. The use of stems in the selection of International Nonproprietary Names (INN) for pharmaceutical substances. Geneva: World Health Organization; 2018 (WHO/EMP/RHT/TSN/2018.1). Licence: CC BY-NC-SA 3.0 IGO. Cataloguing-in-Publication (CIP) data. -
Final1-Aritmo-Final-Report-V2-0Final.Pdf
ARITMO Final Report PROJECT FINAL REPORT Grant Agreement number: 241679 Project acronym: ARITMO Project title: Arrhythmogenic potential of drugs Funding Scheme: Small or Medium-Scale Focused Research Project Period covered: from 1st January 2010 to 30th June 2013 Name of the scientific representative of the project's co-ordinator, Title and Organisation: Prof. Miriam CJM Sturkenboom, Erasmus Universitair Medisch Centrum Rotterdam Tel: +31 10 704 4126 Fax: +31 10 704 4722 E-mail: [email protected] Project website1 address: www.aritmo-project.org 1 The home page of the website should contain the generic European flag and the FP7 logo which are available in electronic format at the Europa website (logo of the European flag: http://europa.eu/abc/symbols/emblem/index_en.htm ; logo of the 7th FP: http://ec.europa.eu/research/fp7/index_en.cfm?pg=logos). The area of activity of the project should also be mentioned. © Copyright 2013 ARITMO Consortium 1 ARITMO Final Report Table of contents Table of contents ................................................................................................................................................................. 2 1. Final publishable summary report ................................................................................................................................ 3 1.1 Executive summary ................................................................................................................................................. 3 1.2 Description of project context and