Phenology and Productivity of C3 and C4 Grasslands in Hawaii
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Identification of Cereal Remains from Archaeological Sites 2Nd Edition 2006
Identification of cereal remains from archaeological sites 2nd edition 2006 Spikelet fork of the “new glume wheat” (Jones et al. 2000) Stefanie JACOMET and collaborators Archaeobotany Lab IPAS, Basel University English translation partly by James Greig CEREALS: CEREALIA Fam. Poaceae /Gramineae (Grasses) Systematics and Taxonomy All cereal species belong botanically (taxonomically) to the large family of the Gramineae (Poaceae). This is one of the largest Angiosperm families with >10 000 different species. In the following the systematics for some of the most imporant taxa is shown: class: Monocotyledoneae order: Poales familiy: Poaceae (= Gramineae) (Süssgräser) subfamily: Pooideae Tribus: Triticeae Subtribus: Triticinae genera: Triticum (Weizen, wheat); Aegilops ; Hordeum (Gerste; barley); Elymus; Hordelymus; Agropyron; Secale (Roggen, rye) Note : Avena and the millets belong to other Tribus. The identification of prehistoric cereal remains assumes understanding of different subject areas in botany. These are mainly morphology and anatomy, but also phylogeny and evolution (and today, also genetics). Since most of the cereal species are treated as domesticated plants, many different forms such as subspecies, varieties, and forms appear inside the genus and species (see table below). In domesticates the taxonomical category of variety is also called “sort” (lat. cultivar, abbreviated: cv.). This refers to a variety which evolved through breeding. Cultivar is the lowest taxonomic rank in the domesticated plants. Occasionally, cultivars are also called races: e.g. landraces evolved through genetic isolation, under local environmental conditions whereas „high-breed-races“ were breed by strong selection of humans. Anyhow: The morphological delimitation of cultivars is difficult, sometimes even impossible. It needs great experience and very detailed morphological knowledge. -
A Phylogeny of the Hubbardochloinae Including Tetrachaete (Poaceae: Chloridoideae: Cynodonteae)
Peterson, P.M., K. Romaschenko, and Y. Herrera Arrieta. 2020. A phylogeny of the Hubbardochloinae including Tetrachaete (Poaceae: Chloridoideae: Cynodonteae). Phytoneuron 2020-81: 1–13. Published 18 November 2020. ISSN 2153 733 A PHYLOGENY OF THE HUBBARDOCHLOINAE INCLUDING TETRACHAETE (CYNODONTEAE: CHLORIDOIDEAE: POACEAE) PAUL M. PETERSON AND KONSTANTIN ROMASCHENKO Department of Botany National Museum of Natural History Smithsonian Institution Washington, D.C. 20013-7012 [email protected]; [email protected] YOLANDA HERRERA ARRIETA Instituto Politécnico Nacional CIIDIR Unidad Durango-COFAA Durango, C.P. 34220, México [email protected] ABSTRACT The phylogeny of subtribe Hubbardochloinae is revisited, here with the inclusion of the monotypic genus Tetrachaete, based on a molecular DNA analysis using ndhA intron, rpl32-trnL, rps16 intron, rps16- trnK, and ITS markers. Tetrachaete elionuroides is aligned within the Hubbardochloinae and is sister to Dignathia. The biogeography of the Hubbardochloinae is discussed, its origin likely in Africa or temperate Asia. In a previous molecular DNA phylogeny (Peterson et al. 2016), the subtribe Hubbardochloinae Auquier [Bewsia Gooss., Dignathia Stapf, Gymnopogon P. Beauv., Hubbardochloa Auquier, Leptocarydion Hochst. ex Stapf, Leptothrium Kunth, and Lophacme Stapf] was found in a clade with moderate support (BS = 75, PP = 1.00) sister to the Farragininae P.M. Peterson et al. In the present study, Tetrachaete elionuroides Chiov. is included in a phylogenetic analysis (using ndhA intron, rpl32- trnL, rps16 intron, rps16-trnK, and ITS DNA markers) in order to test its relationships within the Cynodonteae with heavy sampling of species in the supersubtribe Gouiniodinae P.M. Peterson & Romasch. Chiovenda (1903) described Tetrachaete Chiov. with a with single species, T. -
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae) Yun-Jie Zhang1,2,3., Peng-Fei Ma1,2,3., De-Zhu Li1,2* 1 Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 2 Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 3 Graduate University of Chinese Academy of Sciences, Beijing, People’s Republic of China Abstract Background: Bambusoideae is the only subfamily that contains woody members in the grass family, Poaceae. In phylogenetic analyses, Bambusoideae, Pooideae and Ehrhartoideae formed the BEP clade, yet the internal relationships of this clade are controversial. The distinctive life history (infrequent flowering and predominance of asexual reproduction) of woody bamboos makes them an interesting but taxonomically difficult group. Phylogenetic analyses based on large DNA fragments could only provide a moderate resolution of woody bamboo relationships, although a robust phylogenetic tree is needed to elucidate their evolutionary history. Phylogenomics is an alternative choice for resolving difficult phylogenies. Methodology/Principal Findings: Here we present the complete nucleotide sequences of six woody bamboo chloroplast (cp) genomes using Illumina sequencing. These genomes are similar to those of other grasses and rather conservative in evolution. We constructed a phylogeny of Poaceae from 24 complete cp genomes including 21 grass species. Within the BEP clade, we found strong support for a sister relationship between Bambusoideae and Pooideae. In a substantial improvement over prior studies, all six nodes within Bambusoideae were supported with $0.95 posterior probability from Bayesian inference and 5/6 nodes resolved with 100% bootstrap support in maximum parsimony and maximum likelihood analyses. -
Improving Our Understanding of Environmental Controls on the Distribution of C3 and C4 Grasses STEPHANIE PAU*, ERIKA J
Global Change Biology (2013) 19, 184–196, doi: 10.1111/gcb.12037 Improving our understanding of environmental controls on the distribution of C3 and C4 grasses STEPHANIE PAU*, ERIKA J. EDWARDS† andCHRISTOPHER J. STILL‡§ *National Center for Ecological Analysis and Synthesis (NCEAS), 735 State Street, Suite 300, Santa Barbara, CA 93101, USA, †Department of Ecology and Evolutionary Biology, Brown University, Providence, RI 02912, USA, ‡Department of Geography, University of California, Santa Barbara, CA 93106-4060, USA, §Forest Ecosystems and Society, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331-5752, USA Abstract A number of studies have demonstrated the ecological sorting of C3 and C4 grasses along temperature and moisture gradients. However, previous studies of C3 and C4 grass biogeography have often inadvertently compared species in different and relatively unrelated lineages, which are associated with different environmental settings and distinct adaptive traits. Such confounded comparisons of C3 and C4 grasses may bias our understanding of ecological sorting imposed strictly by photosynthetic pathway. Here, we used MaxEnt species distribution modeling in combination with satellite data to understand the functional diversity of C3 and C4 grasses by comparing both large clades and closely related sister taxa. Similar to previous work, we found that C4 grasses showed a preference for regions with higher temperatures and lower precipitation compared with grasses using the C3 pathway. However, air temperature differences were smaller (2 °C vs. 4 °C) and precipitation and % tree cover differences were larger (1783 mm vs. 755 mm, 21.3% vs. 7.7%, respectively) when comparing C3 and C4 grasses within the same clade vs. -
Phylogeny and Subfamilial Classification of the Grasses (Poaceae) Author(S): Grass Phylogeny Working Group, Nigel P
Phylogeny and Subfamilial Classification of the Grasses (Poaceae) Author(s): Grass Phylogeny Working Group, Nigel P. Barker, Lynn G. Clark, Jerrold I. Davis, Melvin R. Duvall, Gerald F. Guala, Catherine Hsiao, Elizabeth A. Kellogg, H. Peter Linder Source: Annals of the Missouri Botanical Garden, Vol. 88, No. 3 (Summer, 2001), pp. 373-457 Published by: Missouri Botanical Garden Press Stable URL: http://www.jstor.org/stable/3298585 Accessed: 06/10/2008 11:05 Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/page/info/about/policies/terms.jsp. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/action/showPublisher?publisherCode=mobot. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. JSTOR is a not-for-profit organization founded in 1995 to build trusted digital archives for scholarship. We work with the scholarly community to preserve their work and the materials they rely upon, and to build a common research platform that promotes the discovery and use of these resources. For more information about JSTOR, please contact [email protected]. -
Taxonomy and Phylogeny in Triticeae: a Historical Review and Current Status
Advances in Plants & Agriculture Research Review Article Open Access Taxonomy and phylogeny in Triticeae: a historical review and current status Abstract Volume 3 Issue 5 - 2016 The Triticeae is an economically important tribe within the Poaceae. Because a number of cereal crops and forage grasses belong to the tribe it has attracted much scientific Mohannad G Al–Saghir attention covering many species: taxonomy, phylogeny, genetics, cytogenetic, genome Department of Environmental and Plant Biology, Ohio analyses (crossing ability and chromosome pairing), isoenzymes, molecular biology University, USA (RFLP, RAPD, PCR sequencing) and breeding. This paper contains a brief historical outline of the taxonomy of the tribe. Phylogenetic hypotheses regarding this tribe Correspondence: Mohannad G Al–Saghir, Department of inferred from different methods, techniques and approaches, are reviewed. The Environmental and Plant Biology, Ohio University, Zanesville, different phylogenies are discussed and compared and conflicts are elucidated. Ohio, USA, Email al–[email protected] Keywords: triticeae, phylogeny, taxonomy, poaceae, perennial species, durum Received: April 23, 2016 | Published: May 10, 2016 wheat, phylogenies, genetic diversity, cytogenetics, molecular biology, chromosomes, perennial, caespitose, thizomatous species Introduction as cited above. We can therefore conclude that the most appropriate outgroup for the tribe will be Bromus. The tribe Triticeae Dum is economically the most important tribe in the grass family (Poaceae). It encompasses between 350 and 500 Definition annual or perennial species,1–3 including the important cereal crops wheat (Triticum aestivium L.), durum wheat (T. turgidum sup. durum The Triticeae encompasses annual and perennial, caespitose or (Desf. MacKay) barley (Hordeum vulgare L.), rye (Secale cereal L.) thizomatous species. -
Poaceae: Pooideae) Based on Plastid and Nuclear DNA Sequences
d i v e r s i t y , p h y l o g e n y , a n d e v o l u t i o n i n t h e monocotyledons e d i t e d b y s e b e r g , p e t e r s e n , b a r f o d & d a v i s a a r h u s u n i v e r s i t y p r e s s , d e n m a r k , 2 0 1 0 Phylogenetics of Stipeae (Poaceae: Pooideae) Based on Plastid and Nuclear DNA Sequences Konstantin Romaschenko,1 Paul M. Peterson,2 Robert J. Soreng,2 Núria Garcia-Jacas,3 and Alfonso Susanna3 1M. G. Kholodny Institute of Botany, Tereshchenkovska 2, 01601 Kiev, Ukraine 2Smithsonian Institution, Department of Botany MRC-166, National Museum of Natural History, P.O. Box 37012, Washington, District of Columbia 20013-7012 USA. 3Laboratory of Molecular Systematics, Botanic Institute of Barcelona (CSIC-ICUB), Pg. del Migdia, s.n., E08038 Barcelona, Spain Author for correspondence ([email protected]) Abstract—The Stipeae tribe is a group of 400−600 grass species of worldwide distribution that are currently placed in 21 genera. The ‘needlegrasses’ are char- acterized by having single-flowered spikelets and stout, terminally-awned lem- mas. We conducted a molecular phylogenetic study of the Stipeae (including all genera except Anemanthele) using a total of 94 species (nine species were used as outgroups) based on five plastid DNA regions (trnK-5’matK, matK, trnHGUG-psbA, trnL5’-trnF, and ndhF) and a single nuclear DNA region (ITS). -
Ornamental Grasses for the Midsouth Landscape
Ornamental Grasses for the Midsouth Landscape Ornamental grasses with their variety of form, may seem similar, grasses vary greatly, ranging from cool color, texture, and size add diversity and dimension to season to warm season grasses, from woody to herbaceous, a landscape. Not many other groups of plants can boast and from annuals to long-lived perennials. attractiveness during practically all seasons. The only time This variation has resulted in five recognized they could be considered not to contribute to the beauty of subfamilies within Poaceae. They are Arundinoideae, the landscape is the few weeks in the early spring between a unique mix of woody and herbaceous grass species; cutting back the old growth of the warm-season grasses Bambusoideae, the bamboos; Chloridoideae, warm- until the sprouting of new growth. From their emergence season herbaceous grasses; Panicoideae, also warm-season in the spring through winter, warm-season ornamental herbaceous grasses; and Pooideae, a cool-season subfamily. grasses add drama, grace, and motion to the landscape Their habitats also vary. Grasses are found across the unlike any other plants. globe, including in Antarctica. They have a strong presence One of the unique and desirable contributions in prairies, like those in the Great Plains, and savannas, like ornamental grasses make to the landscape is their sound. those in southern Africa. It is important to recognize these Anyone who has ever been in a pine forest on a windy day natural characteristics when using grasses for ornament, is aware of the ethereal music of wind against pine foliage. since they determine adaptability and management within The effect varies with the strength of the wind and the a landscape or region, as well as invasive potential. -
Phylogenetic Analyses Reveal the Shady History of C4 Grasses Erika J
Phylogenetic analyses reveal the shady history of C4 grasses Erika J. Edwardsa,1 and Stephen A. Smithb aDepartment of Ecology and Evolutionary Biology, Brown University, Providence, RI 02912; and bNational Evolutionary Synthesis Center, Durham, NC 27705 Edited by Michael J. Donoghue, Yale University, New Haven, CT, and approved December 31, 2009 (received for review August 24, 2009) Grasslands cover more than 20% of the Earth's terrestrial surface, has provided a strong selection pressure for C4 evolution in and their rise to dominance is one of the most dramatic events of eudicots (4). Grasses have long been viewed as an interesting biome evolution in Earth history. Grasses possess two main photo- exception to this pattern (9). Significant positive correlations synthetic pathways: the C3 pathway that is typical of most plants between C4 grass abundance and growing season temperature and a specialized C4 pathway that minimizes photorespiration and have been documented at both continental and regional scales thus increases photosynthetic performance in high-temperature (10–13); C4 grasses dominate tropical grasslands and savannas and/or low-CO2 environments. C4 grasses dominate tropical and but are virtually absent from cool-temperate grasslands and subtropical grasslands and savannas, and C3 grasses dominate the steppes. Furthermore, both experimental measurements of world's cooler temperate grassland regions. This striking pattern photosynthetic light use efficiency (termed “quantum yield”), has been attributed to C4 physiology, with the implication that the and predictions of leaf models of C3 and C4 photosynthesis evolution of the pathway enabled C4 grasses to persist in warmer provide strong evidence that C4 grasses outperform C3 grasses at climates than their C3 relatives. -
Molecular Phylogeny of Tribolium (Danthonioideae: Poaceae) and Its Taxonomic Implications
BOLUS LIBRARY C24 0007 9273 MOLECULAR PHYLOGENY OF TRIBOLIUM (DANTHONIOIDEAE: POACEAE) AND ITS TAXONOMIC IMPLICATIONS REFILOE NTSOHI NTSREF002 SYSTEMATICS HONOURS PROJECT, 2003 SUPERVISOR: TONY VERBOOM University of Cape Town The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgement of the source. The thesis is to be used for private study or non- commercial research purposes only. Published by the University of Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University of Cape Town ABSTRACT Molecular sequence data from two noncoding regions of D A (ITS AND TRNL-F) Were used to produce a phylogeny for the genus Tribolium and its African and Australasian allies. Topological comparisons of the combined molecular data with th e appended existing morphological tree were made. A significant incongruence was I revealed. Molecular data indicate that Tribolium is paraphyletic. The formally defined sections: Uniolae, Acutiflorae and Tribolium have been retrieved by the molecular data. The analysis retrieved Karroochloa as polyphyletic. Monophyly of Schismus is strongly supported. The Australasian species form a monophyletic clade. Data support early divergence of the Merxmuellera species and Pseudopentameris macrantha. I I I I 2 INTRODUCTION Tribolium is a genus of annual and perennial temperate, C3 grasses, currently comprising a total of ten species (Linder and Davidse, 1997). The genus is restricted to southern Africa, where the species are endemic to the winter rainfall region of the western Cape, which includes the Cape Floristic and Namaqualand regions. Here it forms part of the fynbos and succulent Karoo floras, with marginal populations of the most widespread species occurring in the neighbouring biomes. -
A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution Across the Poales
GBE A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales Michael R. McKain1,2,*, Haibao Tang3,4,JoelR.McNeal5,2, Saravanaraj Ayyampalayam2, Jerrold I. Davis6, Claude W. dePamphilis7, Thomas J. Givnish8,J.ChrisPires9, Dennis Wm. Stevenson10,and James H. Leebens-Mack2 1Donald Danforth Plant Science Center, St. Louis, Missouri Downloaded from https://academic.oup.com/gbe/article-abstract/8/4/1150/2574085 by guest on 17 January 2019 2Department of Plant Biology, University of Georgia 3Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian Province, China 4School of Plant Sciences, iPlant Collaborative, University of Arizona 5Department of Ecology, Evolution, and Organismal Biology, Kennesaw State University 6L. H. Bailey Hortorium and Department of Plant Biology, Cornell University 7Department of Biology and Institute of Molecular Evolutionary Genetics, Pennsylvania State University, University Park, Pennsylvania 8Department of Botany, University of Wisconsin-Madison 9Division of Biological Sciences, University of Missouri, Columbia 10New York Botanical Garden, Bronx, New York *Corresponding author: E-mail: [email protected]. Accepted: March 7, 2016 Data deposition: Alignments, trees, and analyses for this project have been deposited at Dryad under the accession doi:10.5061/dryad.305s0. DNA sequences have been deposited at GenBank under the accession PRJNA313089. Abstract Comparisons of flowering plant genomes reveal multiple rounds of ancient polyploidy characterized by large intragenomic syntenic blocks. Three such whole-genome duplication (WGD) events, designated as rho (r), sigma (s), and tau (t), have been identified in the genomes of cereal grasses. Precise dating of these WGD events is necessary to investigate how they have influenced diversification rates, evolutionary innovations, and genomic characteristics such as the GC profile of protein-coding sequences. -
Shedding Light on the Evolution of Grasses and Grasslands Through Automated, Quantitative Imaging Analyses of Plant Silica Microfossils Caroline A.E
Shedding light on the evolution of grasses and grasslands through automated, quantitative imaging analyses of plant silica microfossils Caroline A.E. Strömberg Department of Biology & Burke Museum University of Washington Seattle, WA Grasslands are ecologically vital •Grassy biomes make up >40% of Earth’s land surface Color = grass-dominated habitats Lehmann et al. (in prep.) When and how did grassland ecosystems come to be? • When did the grass family first originate and diversify? • When did grasses become ecologically dominant, forming grasslands? Direct evidence for past grasslands •Grass mesofossils and pollen are rare until the late Miocene—and often hard to interpret taxonomically Pollen Fruit Leaves Strömberg (2002, 2011) Phytoliths (plant silica) Grass epidermis: Grass phytolith in sediment: 10 µm epidermal cell stomata Phytoliths (plant silica) • Taxonomically (Gallaher et al. 2019) useful variation within Poaceae (grass family) PACMAD: Panicoideae Arundinoideae Chloridoideae PACMAD Micrairoideae Aristidoideae Danthonioideae BOP: Bambusoideae Oryzoideae Pooideae BOP Early-diverging grasses Phytoliths (plant silica) • Taxonomically (Gallaher et al. 2019) useful variation within Poaceae (grass family): OPEN habitat o Diversification (tropical) of ancient PACMAD grass lineages o Ecology of past grass OPEN communities habitat (temperate) BOP CLOSED habitat Radiation of open-habitat grasses (Gallaher et al. 2019) • Fossil phytolith morphotypes (Americas, 40 Ma Eurasia): à Open-habitat PACMAD grasses 19 Ma diversified by 40 Ma 40 Ma BOP 35 Ma (Strömberg 2004, 2005, Strömberg et al. 2007, 2013, Miller et al. 2012) Grassland evolution in North America • Earliest (early Miocene) grasslands were dominated by cool-temperate stipoid pooids • Tropical, dry- adapted (C4) chloridoids spread during the latest Miocene (Strömberg 2004, 2005, 2011, Strömberg et al.