GBE A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales Michael R. McKain1,2,*, Haibao Tang3,4,JoelR.McNeal5,2, Saravanaraj Ayyampalayam2, Jerrold I. Davis6, Claude W. dePamphilis7, Thomas J. Givnish8,J.ChrisPires9, Dennis Wm. Stevenson10,and James H. Leebens-Mack2 1Donald Danforth Plant Science Center, St. Louis, Missouri Downloaded from https://academic.oup.com/gbe/article-abstract/8/4/1150/2574085 by guest on 17 January 2019 2Department of Plant Biology, University of Georgia 3Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian Province, China 4School of Plant Sciences, iPlant Collaborative, University of Arizona 5Department of Ecology, Evolution, and Organismal Biology, Kennesaw State University 6L. H. Bailey Hortorium and Department of Plant Biology, Cornell University 7Department of Biology and Institute of Molecular Evolutionary Genetics, Pennsylvania State University, University Park, Pennsylvania 8Department of Botany, University of Wisconsin-Madison 9Division of Biological Sciences, University of Missouri, Columbia 10New York Botanical Garden, Bronx, New York *Corresponding author: E-mail:
[email protected]. Accepted: March 7, 2016 Data deposition: Alignments, trees, and analyses for this project have been deposited at Dryad under the accession doi:10.5061/dryad.305s0. DNA sequences have been deposited at GenBank under the accession PRJNA313089. Abstract Comparisons of flowering plant genomes reveal multiple rounds of ancient polyploidy characterized by large intragenomic syntenic blocks. Three such whole-genome duplication (WGD) events, designated as rho (r), sigma (s), and tau (t), have been identified in the genomes of cereal grasses. Precise dating of these WGD events is necessary to investigate how they have influenced diversification rates, evolutionary innovations, and genomic characteristics such as the GC profile of protein-coding sequences.