ORBITA and Coronary Stents: a Case Study in the Analysis and Reporting
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Clinical Research Methodology
Indian Journal of Pharmaceutical Education and Research Association of Pharmaceutical Teachers of India Clinical Research Methodology Purvi Gandhi* Department of Pharmacology, B. S. Patel Pharmacy College, Mehsana, India. ABSTRACT Submitted: 29/5/2010 Revised: 29/8/2010 Accepted: 04/10/2010 Medical trials occupy a greater part of clinical trials and exceed in number over other types of clinical trials. Although clinical researches or studies other than those falling under the category of trial, lack the commercial aspect, they may contribute to the betterment of clinical practice and may constitute a base for large-scale commercial trials. Explanatory clinical studies are the most widely accepted and executed type of clinical researches/ trials. They explain not only the therapeutic aspects of a drug but also provide with a detailed description on adverse events and pharmacovigilance. Any new drug to be marketed first requires proving its safety, efficacy and the need over existing product range by passing through various phases of clinical trial that follows animal studies. For this reason, randomized controlled trials (RCTs) with placebo- control and blinding fashion is the only accepted form of clinical trials with few exceptions. Besides explanatory, descriptive clinical research is also useful for certain types of studies such as epidemiological research. While conducting RCTs on humans (either healthy volunteers or patients), various components of the trials viz. study design, patient population, control group, randomization, blinding or non-blinding, treatment considerations and outcome measures are important to strengthen the outcomes of the trial. Similarly, proper utilization of statistics, for sample-size calculation, data collection, compilation and analysis by applying proper statistical tests, signifies the outcomes of the clinical research. -
Experimental Evidence During a Global Pandemic
Original research BMJ Glob Health: first published as 10.1136/bmjgh-2020-004222 on 23 October 2020. Downloaded from Is health politically irrelevant? Experimental evidence during a global pandemic Arnab Acharya,1 John Gerring,2 Aaron Reeves3 To cite: Acharya A, Gerring J, ABSTRACT Key questions Reeves A. Is health politically Objective To investigate how health issues affect voting irrelevant? Experimental behaviour by considering the COVID-19 pandemic, which What is already known? evidence during a global offers a unique opportunity to examine this interplay. pandemic. BMJ Global Health Political leaders in democracies are sensitive to cues Design We employ a survey experiment in which ► 2020;5:e004222. doi:10.1136/ from the electorate and are less likely to implement treatment groups are exposed to key facts about the bmjgh-2020-004222 unpopular policies. pandemic, followed by questions intended to elicit attitudes Electoral accountability is not automatic, however, toward the incumbent party and government responsibility ► Additional material is and it only exists if citizens connect specific policies ► for the pandemic. published online only. To view, to politicians and vote accordingly. Setting The survey was conducted amid the lockdown please visit the journal online ► We know little about how public health attitudes af- period of 15–26 April 2020 in three large democratic (http:// dx. doi. org/ 10. 1136/ fect voting intention or behaviour. bmjgh- 2020- 004222). countries with the common governing language of English: India, the United Kingdom and the United States. Due What are the new findings? to limitations on travel and recruitment, subjects were ► The majority of our respondents believe health is an Received 15 October 2020 recruited through the M-T urk internet platform and the important policy area and that government has some Accepted 16 October 2020 survey was administered entirely online. -
Sensitivity and Specificity. Wikipedia. Last Modified on 16 November 2013
Sensitivity and specificity - Wikipedia, the free encyclopedia Create account Log in Article Talk Read Edit View Sensitivity and specificity From Wikipedia, the free encyclopedia Main page Contents Sensitivity and specificity are statistical measures of the performance of a binary classification test, also known in statistics as Featured content classification function. Sensitivity (also called the true positive rate, or the recall rate in some fields) measures the proportion of Current events actual positives which are correctly identified as such (e.g. the percentage of sick people who are correctly identified as having Random article the condition). Specificity measures the proportion of negatives which are correctly identified as such (e.g. the percentage of Donate to Wikipedia healthy people who are correctly identified as not having the condition, sometimes called the true negative rate). These two measures are closely related to the concepts of type I and type II errors. A perfect predictor would be described as 100% Interaction sensitive (i.e. predicting all people from the sick group as sick) and 100% specific (i.e. not predicting anyone from the healthy Help group as sick); however, theoretically any predictor will possess a minimum error bound known as the Bayes error rate. About Wikipedia For any test, there is usually a trade-off between the measures. For example: in an airport security setting in which one is testing Community portal for potential threats to safety, scanners may be set to trigger on low-risk items like belt buckles and keys (low specificity), in Recent changes order to reduce the risk of missing objects that do pose a threat to the aircraft and those aboard (high sensitivity). -
Llovera 1..10
RESEARCH ARTICLE STROKE Results of a preclinical randomized controlled multicenter trial (pRCT): Anti-CD49d treatment for acute brain ischemia Gemma Llovera,1,2 Kerstin Hofmann,1,2 Stefan Roth,1,2 Angelica Salas-Pérdomo,3,4 Maura Ferrer-Ferrer,3,4 Carlo Perego,5 Elisa R. Zanier,5 Uta Mamrak,1,2 Andre Rex,6 Hélène Party,7 Véronique Agin,7 Claudine Fauchon,8 Cyrille Orset,7,8 Benoît Haelewyn,7,8 Maria-Grazia De Simoni,5 Ulrich Dirnagl,6 Ulrike Grittner,9 Anna M. Planas,3,4 Nikolaus Plesnila,1,2 Denis Vivien,7,8 Arthur Liesz1,2* Numerous treatments have been reported to provide a beneficial outcome in experimental animal stroke models; however, these treatments (with the exception of tissue plasminogen activator) have failed in clinical trials. To improve the translation of treatment efficacy from bench to bedside, we have performed a preclinical randomized controlled multicenter trial (pRCT) to test a potential stroke therapy under circumstances closer to the design and rigor of a Downloaded from clinical randomized control trial. Anti-CD49d antibodies, which inhibit the migration of leukocytes into the brain, were previously investigated in experimental stroke models by individual laboratories. Despite the conflicting results from four positive and one inconclusive preclinical studies, a clinical trial was initiated. To confirm the preclinical results and to test the feasibility of conducting a pRCT, six independent European research centers investigated the efficacy of anti-CD49d antibodies in two distinct mouse models of stroke in a centrally coordinated, randomized, and blinded approach. The results pooled from all research centers revealed that treatment with CD49d-specific antibodies signif- http://stm.sciencemag.org/ icantly reduced both leukocyte invasion and infarct volume after the permanent distal occlusion of the middle cerebral artery, which causes a small cortical infarction. -
A Randomized Control Trial Evaluating the Effects of Police Body-Worn
A randomized control trial evaluating the effects of police body-worn cameras David Yokuma,b,1,2, Anita Ravishankara,c,d,1, and Alexander Coppocke,1 aThe Lab @ DC, Office of the City Administrator, Executive Office of the Mayor, Washington, DC 20004; bThe Policy Lab, Brown University, Providence, RI 02912; cExecutive Office of the Chief of Police, Metropolitan Police Department, Washington, DC 20024; dPublic Policy and Political Science Joint PhD Program, University of Michigan, Ann Arbor, MI 48109; and eDepartment of Political Science, Yale University, New Haven, CT 06511 Edited by Susan A. Murphy, Harvard University, Cambridge, MA, and approved March 21, 2019 (received for review August 28, 2018) Police body-worn cameras (BWCs) have been widely promoted as The existing evidence on whether BWCs have the anticipated a technological mechanism to improve policing and the perceived effects on policing outcomes remains relatively limited (17–19). legitimacy of police and legal institutions, yet evidence of their Several observational studies have evaluated BWCs by compar- effectiveness is limited. To estimate the effects of BWCs, we con- ing the behavior of officers before and after the introduction of ducted a randomized controlled trial involving 2,224 Metropolitan BWCs into the police department (20, 21). Other studies com- Police Department officers in Washington, DC. Here we show pared officers who happened to wear BWCs to those without (15, that BWCs have very small and statistically insignificant effects 22, 23). The causal inferences drawn in those studies depend on on police use of force and civilian complaints, as well as other strong assumptions about whether, after statistical adjustments policing activities and judicial outcomes. -
Why Replications Do Not Fix the Reproducibility Crisis: a Model And
1 63 2 Why Replications Do Not Fix the Reproducibility 64 3 65 4 Crisis: A Model and Evidence from a Large-Scale 66 5 67 6 Vignette Experiment 68 7 69 8 Adam J. Berinskya,1, James N. Druckmanb,1, and Teppei Yamamotoa,1,2 70 9 71 a b 10 Department of Political Science, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139; Department of Political Science, Northwestern 72 University, 601 University Place, Evanston, IL 60208 11 73 12 This manuscript was compiled on January 9, 2018 74 13 75 14 There has recently been a dramatic increase in concern about collective “file drawer” (4). When publication decisions depend 76 15 whether “most published research findings are false” (Ioannidis on factors beyond research quality, the emergent scientific 77 16 2005). While the extent to which this is true in different disciplines re- consensus may be skewed. Encouraging replication seems to 78 17 mains debated, less contested is the presence of “publication bias,” be one way to correct a biased record of published research 79 18 which occurs when publication decisions depend on factors beyond resulting from this file drawer problem (5–7). Yet, in the 80 19 research quality, most notably the statistical significance of an ef- current landscape, one must also consider potential publication 81 20 fect. Evidence of this “file drawer problem” and related phenom- biases at the replication stage. While this was not an issue 82 21 ena across fields abounds, suggesting that an emergent scientific for OSC since they relied on over 250 scholars to replicate the 83 22 consensus may represent false positives. -
Interpreting Study Results: How Biased Am I? January 29, 2020
WELCOME Interpreting Study Results: How Biased Am I? January 29, 2020 www.aacom.org/aogme Copyright © 2019 American Association of Colleges of Osteopathic Medicine. All Rights Reserved. HOUSEKEEPING NOTES • This webinar is being recorded, recording will be shared with participants and posted on the AOGME’s web page • Webinar participants are in listen-only mode • For technical issues, please use the chat feature and raise your hand and we will assist you • You may submit questions anytime during this live webinar using the chat feature, if time remains, questions will be addressed either during or at the end of the presentation. SPEAKERS Mark R. Speicher, PhD, MHA Senior Vice President for Medical Education and Research American Association of Colleges of Osteopathic Medicine (AACOM) Suporn Sukpraprut-Braaten, MSc, MA, PhD Graduate Medical Director of Research Unity Health In research, types of studies depend on the purpose of the study, data collection strategy, and other factors. Types of Study: Weaker Evidence I. Observational study (Cohort Study) 1.1 Cross-sectional study 1.2 Case-control study Prospective Observational Study 1.3 Observational study Retrospective Observational Study II. Non-randomized Controlled Trial Randomized Controlled Trial (Clinical Trial) . Phase I . Phase II . Phase III . Phase IV III. Systematic Review and Meta-analysis Stronger Evidence HIERARCHY OF RESEARCH EVIDENCE Strongest evidence Weakest evidence DIAGRAM 1 OVERVIEW OF TEST HYPOTHESES ANOVA – Analysis of variance ANCOVA – Analysis of covariance Source: Suporn Sukpraprut. Biostatistics: Specific Tests. American College of Preventive Medicine (ACPM) Board Review Course Material (Copyright) 6 DIAGRAM 2: TEST HYPOTHESES FOR CONTINUOUS OUTCOME Source: Suporn Sukpraprut. -
Which Findings Should Be Published?∗
Which findings should be published?∗ Alexander Frankel† Maximilian Kasy‡ December 5, 2020 Abstract Given a scarcity of journal space, what is the optimal rule for whether an empirical finding should be published? Suppose publications inform the public about a policy-relevant state. Then journals should publish extreme results, meaning ones that move beliefs sufficiently. This optimal rule may take the form of a one- or a two-sided test comparing a point estimate to the prior mean, with critical values determined by a cost-benefit analysis. Consideration of future studies may additionally justify the publication of precise null results. If one insists that standard inference remain valid, however, publication must not select on the study’s findings. Keywords: Publication bias, mechanism design, value of information JEL Codes: C44, D80, D83 1 Introduction Not all empirical findings get published. Journals may be more likely to publish findings that are statistically significant, as documented for instance by Franco et al. (2014), Brodeur et al. (2016), and Andrews and Kasy (2019). They may also be more likely to publish findings that are surprising, or conversely ones that confirm some prior belief. Whatever its form, selective publication distorts statistical inference. If only estimates with large effect sizes were to be written up and published, say, then ∗We thank Isaiah Andrews, Victoria Baranov, Ben Brooks, Gary Chamberlain, Zoe Hitzig, Emir Kamenica, Matthew Notowidigdo, Jesse Shapiro, and Glen Weyl for helpful discussions and com- ments. †University of Chicago Booth School of Business. Address: 5807 South Woodlawn Avenue Chicago, IL 60637. E-Mail: [email protected]. ‡Department of Economics, Oxford University. -
1 Maximizing the Reproducibility of Your Research Open
1 Maximizing the Reproducibility of Your Research Open Science Collaboration1 Open Science Collaboration (in press). Maximizing the reproducibility of your research. In S. O. Lilienfeld & I. D. Waldman (Eds.), Psychological Science Under Scrutiny: Recent Challenges and Proposed Solutions. New York, NY: Wiley. Authors’ Note: Preparation of this chapter was supported by the Center for Open Science and by a Veni Grant (016.145.049) awarded to Hans IJzerman. Correspondence can be addressed to Brian Nosek, [email protected]. 1 Alexander A. Aarts, Nuenen, The Netherlands; Frank A. Bosco, Virginia Commonwealth University; Katherine S. Button, University of Bristol; Joshua Carp, Center for Open Science; Susann Fiedler, Max Planck Institut for Research on Collective Goods; James G. Field, Virginia Commonwealth University; Roger Giner-Sorolla, University of Kent; Hans IJzerman, Tilburg University; Melissa Lewis, Center for Open Science; Marcus Munafò, University of Bristol; Brian A. Nosek, University of Virginia; Jason M. Prenoveau, Loyola University Maryland; Jeffrey R. Spies, Center for Open Science 2 Commentators in this book and elsewhere describe evidence that modal scientific practices in design, analysis, and reporting are interfering with the credibility and veracity of the published literature (Begley & Ellis, 2012; Ioannidis, 2005; Miguel et al., 2014; Simmons, Nelson, & Simonsohn, 2011). The reproducibility of published findings is unknown (Open Science Collaboration, 2012a), but concern that is lower than desirable is widespread - -
Paradoxical Conclusions in Randomised Controlled Trials with 'Doubly Null
Open access Original research BMJ Open: first published as 10.1136/bmjopen-2019-029596 on 9 January 2020. Downloaded from ‘Not clinically effective but cost- effective’ - paradoxical conclusions in randomised controlled trials with ‘doubly null’ results: a cross- sectional study James Raftery ,1 HC Williams,2 Aileen Clarke,3 Jim Thornton,2 John Norrie,4 Helen Snooks,5 Ken Stein6 To cite: Raftery J, Williams HC, ABSTRACT Strengths and limitations of this study Clarke A, et al. ‘Not clinically Objectives Randomised controlled trials in healthcare effective but cost- effective’ increasingly include economic evaluations. Some show - paradoxical conclusions in ► A strength of this study is the identification of a small differences which are not statistically significant. randomised controlled trials with problem to do with results on cost- effectiveness ‘doubly null’ results: a cross- Yet these sometimes come to paradoxical conclusions from randomised trials which is fairly common but sectional study. BMJ Open such as: ‘the intervention is not clinically effective’ but has not otherwise been reported or examined. ‘is probably cost- effective’. This study aims to quantify 2020;10:e029596. doi:10.1136/ ► A limitation was that the sample was confined bmjopen-2019-029596 the extent of non- significant results and the types of to that of trials funded and published by the UK’s conclusions drawn from them. ► Prepublication history and Health Technology Assessment (HTA) programme. additional material for this Design Cross- sectional retrospective analysis of ► The study was strengthened by using full reports paper are available online. To randomised trials published by the UK’s National of each study in the HTA monograph series, which view these files, please visit Institute for Health Research (NIHR) Health Technology requires conclusions and recommendations for the journal online (http:// dx. -
Section 4.3 Good and Poor Ways to Experiment
Chapter 4 Gathering Data Section 4.3 Good and Poor Ways to Experiment Copyright © 2013, 2009, and 2007, Pearson Education, Inc. Elements of an Experiment Experimental units: The subjects of an experiment; the entities that we measure in an experiment. Treatment: A specific experimental condition imposed on the subjects of the study; the treatments correspond to assigned values of the explanatory variable. Explanatory variable: Defines the groups to be compared with respect to values on the response variable. Response variable: The outcome measured on the subjects to reveal the effect of the treatment(s). 3 Copyright © 2013, 2009, and 2007, Pearson Education, Inc. Experiments ▪ An experiment deliberately imposes treatments on the experimental units in order to observe their responses. ▪ The goal of an experiment is to compare the effect of the treatment on the response. ▪ Experiments that are randomized occur when the subjects are randomly assigned to the treatments; randomization helps to eliminate the effects of lurking variables. 4 Copyright © 2013, 2009, and 2007, Pearson Education, Inc. 3 Components of a Good Experiment 1. Control/Comparison Group: allows the researcher to analyze the effectiveness of the primary treatment. 2. Randomization: eliminates possible researcher bias, balances the comparison groups on known as well as on lurking variables. 3. Replication: allows us to attribute observed effects to the treatments rather than ordinary variability. 5 Copyright © 2013, 2009, and 2007, Pearson Education, Inc. Component 1: Control or Comparison Group ▪ A placebo is a dummy treatment, i.e. sugar pill. Many subjects respond favorably to any treatment, even a placebo. ▪ A control group typically receives a placebo. -
(Salmo Salar) with Amoebic Gill Disease (AGD) Chlo
The diversity and pathogenicity of amoebae on the gills of Atlantic salmon (Salmo salar) with amoebic gill disease (AGD) Chloe Jessica English BMarSt (Hons I) A thesis submitted for the degree of Doctor of Philosophy at The University of Queensland in 2019 i Abstract Amoebic gill disease (AGD) is an ectoparasitic condition affecting many teleost fish globally, and it is one of the main health issues impacting farmed Atlantic salmon, Salmo salar in Tasmania’s expanding aquaculture industry. To date, Neoparamoeba perurans is considered the only aetiological agent of AGD, based on laboratory trials that confirmed its pathogenicity, and its frequent presence on the gills of farmed Atlantic salmon with branchitis. However, the development of gill disease in salmonid aquaculture is complex and multifactorial and is not always closely associated with the presence and abundance of N. perurans. Moreover, multiple other amoeba species colonise the gills and their role in AGD is unknown. In this study we profiled the Amoebozoa community on the gills of AGD-affected and healthy farmed Atlantic salmon and performed in vivo challenge trials to investigate the possible role these accompanying amoebae play alongside N. perurans in AGD onset and severity. Significantly, it was shown that despite N. perurans being the primary aetiological agent, it is possible AGD has a multi-amoeba aetiology. Specifically, the diversity of amoebae colonising the gills of AGD-affected farmed Atlantic salmon was documented by culturing the gill community in vitro, then identifying amoebae using a combination of morphological and sequence-based taxonomic methods. In addition to N. perurans, 11 other Amoebozoa were isolated from the gills, and were classified within the genera Neoparamoeba, Paramoeba, Vexillifera, Pseudoparamoeba, Vannella and Nolandella.