Natural/Unconventional Computing and Its Philosophical Significance
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Dynamics of Information As Natural Computation
Information 2011, 2, 460-477; doi:10.3390/info2030460 OPEN ACCESS information ISSN 2078-2489 www.mdpi.com/journal/information Article Dynamics of Information as Natural Computation Gordana Dodig Crnkovic Mälardalen University, School of Innovation, Design and Engineering, Sweden; E-Mail: [email protected] Received: 30 May 2011; in revised form: 13 July 2011 / Accepted: 19 July 2011 / Published: 4 August 2011 Abstract: Processes considered rendering information dynamics have been studied, among others in: questions and answers, observations, communication, learning, belief revision, logical inference, game-theoretic interactions and computation. This article will put the computational approaches into a broader context of natural computation, where information dynamics is not only found in human communication and computational machinery but also in the entire nature. Information is understood as representing the world (reality as an informational web) for a cognizing agent, while information dynamics (information processing, computation) realizes physical laws through which all the changes of informational structures unfold. Computation as it appears in the natural world is more general than the human process of calculation modeled by the Turing machine. Natural computing is epitomized through the interactions of concurrent, in general asynchronous computational processes which are adequately represented by what Abramsky names “the second generation models of computation” [1] which we argue to be the most general representation of information dynamics. Keywords: philosophy of information; information semantics; information dynamics; natural computationalism; unified theories of information; info-computationalism 1. Introduction This paper has several aims. Firstly, it offers a computational interpretation of information dynamics of the info-computational universe [2,3]. -
Natural Computing Conclusion
Introduction Natural Computing Conclusion Natural Computing Dr Giuditta Franco Department of Computer Science, University of Verona, Italy [email protected] For the logistics of the course, please see the syllabus Dr Giuditta Franco Slides Natural Computing 2017 Introduction Natural Computing Natural Computing Conclusion Natural Computing Natural (complex) systems work as (biological) information elaboration systems, by sophisticated mechanisms of goal-oriented control, coordination, organization. Computational analysis (mat modeling) of life is important as observing birds for designing flying objects. "Informatics studies information and computation in natural and artificial systems” (School of Informatics, Univ. of Edinburgh) Computational processes observed in and inspired by nature. Ex. self-assembly, AIS, DNA computing Ex. Internet of things, logics, programming, artificial automata are not natural computing. Dr Giuditta Franco Slides Natural Computing 2017 Introduction Natural Computing Natural Computing Conclusion Bioinformatics versus Infobiotics Applying statistics, performing tools, high technology, large databases, to analyze bio-logical/medical data, solve problems, formalize/frame natural phenomena. Ex. search algorithms to recover genomic/proteomic data, to process them, catalogue and make them publically accessible, to infer models to simulate their dynamics. Identifying informational mechanisms underlying living systems, how they assembled and work, how biological information may be defined, processed, decoded. New -
A Computational Model Inspired by Gene Regulatory Networks
Rui Miguel Lourenço Lopes A Computational Model Inspired by Gene Regulatory Networks Doctoral thesis submitted to the Doctoral Program in Information Science and Technology, supervised by Full Professor Doutor Ernesto Jorge Fernandes Costa, and presented to the Department of Informatics Engineering of the Faculty of Sciences and Technology of the University of Coimbra. January 2015 A Computational Model Inspired by Gene Regulatory Networks A thesis submitted to the University of Coimbra in partial fulfillment of the requirements for the Doctoral Program in Information Science and Technology by Rui Miguel Lourenço Lopes [email protected] Department of Informatics Engineering Faculty of Sciences and Technology University of Coimbra Coimbra, January 2015 Financial support by Fundação para a Ciência e a Tecnologia, through the PhD grant SFRH/BD/69106/2010. A Computational Model Inspired by Gene Regulatory Networks ©2015 Rui L. Lopes ISBN 978-989-20-5460-5 Cover image: Composition of a Santa Fe trail program evolved by ReNCoDe overlaid on the ancestors, with a 3D model of the DNA crystal structure (by Paul Hakimata). This dissertation was prepared under the supervision of Ernesto J. F. Costa Full Professor of the Department of Informatics Engineering of the Faculty of Sciences and Tecnology of the University of Coimbra In loving memory of my father. Acknowledgements Thank you very much to Prof. Ernesto Costa, for his vision on research and education, for all the support and contributions to my ideas, and for the many life stories that always lighten the mood. Thank you also to Nuno Lourenço for the many discussions, shared books, and his constant helpfulness. -
The Many Facets of Natural Computing
The Many Facets of Natural Computing Lila Kari0 Grzegorz Rozenberg Department of Computer Science Leiden Inst. of Advanced Computer Science University of Western Ontario Leiden University, Niels Bohrweg 1 London, ON, N6A 5B7, Canada 2333 CA Leiden, The Netherlands [email protected] Department of Computer Science University of Colorado at Boulder Boulder, CO 80309, USA [email protected] “Biology and computer science - life and computation - are various natural phenomena. Thus, rather than being over- related. I am confident that at their interface great discoveries whelmed by particulars, it is our hope that the reader will await those who seek them.” (L.Adleman, [3]) see this article as simply a window onto the profound rela- tionship that exists between nature and computation. There is information processing in nature, and the natu- 1. FOREWORD ral sciences are already adapting by incorporating tools and Natural computing is the field of research that investi- concepts from computer science at a rapid pace. Conversely, gates models and computational techniques inspired by na- a closer look at nature from the point of view of information ture and, dually, attempts to understand the world around processing can and will change what we mean by computa- us in terms of information processing. It is a highly in- tion. Our invitation to you, fellow computer scientists, is to terdisciplinary field that connects the natural sciences with take part in the uncovering of this wondrous connection.1 computing science, both at the level of information tech- nology and at the level of fundamental research, [98]. As a matter of fact, natural computing areas and topics come in many flavours, including pure theoretical research, algo- 2. -
Info-Computational Philosophy of Nature
Alan Turing’s Legacy: Info-Computational Philosophy of Nature Gordana Dodig-Crnkovic1 Abstract. Alan Turing’s pioneering work on computability, and Turing did not originally claim that the physical system his ideas on morphological computing support Andrew Hodges’ producing patterns actually performs computation through view of Turing as a natural philosopher. Turing’s natural morphogenesis. Nevertheless, from the perspective of info- philosophy differs importantly from Galileo’s view that the book computationalism, [3,4] argues that morphogenesis is a process of nature is written in the language of mathematics (The of morphological computing. Physical process, though not Assayer, 1623). Computing is more than a language of nature as computational in the traditional sense, presents natural computation produces real time physical behaviors. This article (unconventional), physical, morphological computation. presents the framework of Natural Info-computationalism as a contemporary natural philosophy that builds on the legacy of An essential element in this process is the interplay between the Turing’s computationalism. Info-computationalism is a synthesis informational structure and the computational process – of Informational Structural Realism (the view that nature is a information self-structuring. The process of computation web of informational structures) and Natural Computationalism implements physical laws which act on informational structures. (the view that nature physically computes its own time Through the process of computation, structures change their development). It presents a framework for the development of a forms, [5]. All computation on some level of abstraction is unified approach to nature, with common interpretation of morphological computation – a form-changing/form-generating inanimate nature as well as living organisms and their social process, [4]. -
Algorithmic Social Sciences Research Unit ASSRU Department of Economics University of Trento Via Inama 5 381 22 Trento, Italy
Algorithmic Social Sciences Research Unit ASSRU Department of Economics University of Trento Via Inama 5 381 22 Trento, Italy Discussion Paper Series 7 – 2014/I Alan Turing A Forbidden Fruit, its Serendipitous Fall and a Poisoned Bite K. VELA VELUPILLAI1 August 2014 ! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! 1!Department of Economics, The New School for Social Research (NSSR), 6 East 16th Street, New York, NY 10003, USA & Department of Economics, University of Trento, via Inama 5, 381 22 Trento, Italy. Email: [email protected] Forthcoming in: the Interdisciplinary Journal of Economics and Business Law (IJEBL), Vol. 4, Issue 1. Alan Turing A Forbidden Fruit, its Serendipitous Fall and a Poisoned Bite K. Vela Velupillai Department of Economics New School for Social Research (NSSR) New York, NY 10003 USA 15 August 2014 “We can only see a short distance ahead, but we can see plenty that needs to be done.”. Turing, 1950, p. 460. The metaphor of the ‘fall of man’ (at least in Christian traditions), the story of the origins of the Universal Law of Gravitation (at the imaginative hands of Newton) and the ‘bite’ that tragically ended a young Turing’s life, sixty years ago, even at the very heights of his intellectual powers, are all about the way apples have shaped our fate – for good and evil. This is a commemorative essay, on the sixtieth anniversary of the death of Turing, apparently by his own hands, as a result of a bite – or two – in an apple, found to have been poisoned, most likely by himself (although conspiracy theories have not completely ‘died’, during these six decades of sadness, at his untimely death). -
Alan Turing: Virtuosity and Visualisation
http://dx.doi.org/10.14236/ewic/EVA2016.40 Alan Turing: Virtuosity and visualisation Jonathan P. Bowen London South Bank University, UK & Museophile Limited, Oxford, UK http://www.jpbowen.com [email protected] Alan Turing (1912–1954) has been increasingly recognised as an important mathematician who, despite his short life, developed mathematical ideas that today have led to foundational aspects of computer science, especially with respect to computability, artificial intelligence and morphogenesis (the growth of biological patterns, important in mathematical biology). Some of Turing’s mathematics and related ideas can be visualised in interesting and even artistic ways, aided using software. In addition, a significant corpus of the historical documentation on Turing can now be accessed online as a number of major archives have digitised material related to Turing. This paper introduces some of the major scientific work of Turing and ways in which it can be visualised, often artistically. Turing’s fame has, especially since his centenary in 2012, reached a level where he has had a cultural influence on the arts in general. Although the story of Turing can be seen as one of tragedy, with his life cut short, from a historical viewpoint Turing’s contribution to humankind has been triumphant. Artificial Intelligence. Digital art. History of mathematics. Morphogenesis. Turing Machines. Visualisation. 1. BACKGROUND AND INTRODUCTION a Turing Machine, with visualisations related to of some of Turing’s ideas. Section 3 presents some Alan Mathison Turing, OBE, FRS (23 June 1912 – 7 Turing-related artwork, leading to a new book cover. June 1954) was a British mathematician and In Section 4, major archives relating to Turing are codebreaker (Newman 1955, Hodges 1983/2012). -
Natural Computing Methods in Bioinformatics: a Survey
Natural Computing Methods in Bioinformatics: A Survey Francesco Masulli a;b;¤ and Sushmita Mitra c aDepartment of Computer and Information Sciences, University of Genova, Via Dodecaneso 35, 16146 Genoa, ITALY. bCenter for Biotechnology, Temple University, 1900 N 12th Street Philadelphia PA 19122, USA. cMachine Intelligence Unit, Indian Statistical Institute, Kolkata 700 108, INDIA. Abstract Often data analysis problems in Bioinformatics concern the fusion of multisensor outputs or the fusion of multi-source information, where one must integrate dif- ferent kinds of biological data. Natural computing provides several possibilities in Bioinformatics, especially by presenting interesting nature-inspired methodologies for handling such complex problems. In this article we survey the role of natural computing in the domains of protein structure prediction, microarray data analysis and gene regulatory network generation. We utilize the learning ability of neural networks for adapting, uncertainty handling capacity of fuzzy sets and rough sets for modeling ambiguity, and the search potential of genetic algorithms for e±ciently traversing large search spaces. Key words: Natural Computing, Bioinformatics, protein structure prediction, microarray data analysis, biological networks modeling. 1 Introduction The 20th Century is frequently referred as the Century of Biology, given the huge developments of this scienti¯c area that concluded that century with the great success of the Human Genome Project [1,2] producing the full human DNA sequencing. -
Handbook of Natural Computing
Handbook of Natural Computing Springer Reference Editors • Main Editor – Grzegorz Rozenberg (LIACS, Leiden University, The Netherlands, and Computer Science Dept., University of Colorado, Boulder, USA) • Thomas Bäck (LIACS, Leiden University, The Netherlands) • Joost N. Kok (LIACS, Leiden University, The Netherlands) Details • 4 volumes, 2104 pp., published 08/12 • Printed Book: 978-3-540-92909-3 • eReference (online): 978-3-540-92910-9 • Printed Book + eReference: 978-3-540-92911-6 Overview Natural Computing is the field of research that investigates both human-designed computing inspired by nature and computing taking place in nature, that is, it investigates models and computational tech- niques inspired by nature, and also it investigates, in terms of information processing, phenomena tak- ing place in nature. Examples of the first strand of research include neural computation inspired by the functioning of the brain; evolutionary computation inspired by Darwinian evolution of species; cellular automata in- spired by intercellular communication; swarm intelligence inspired by the behavior of groups of or- ganisms; artificial immune systems inspired by the natural immune system; artificial life systems in- spired by the properties of natural life in general; membrane computing inspired by the compart- mentalized ways in which cells process information; and amorphous computing inspired by morpho- genesis. Other examples of natural-computing paradigms are quantum computing and molecular com- puting, where the goal is to replace traditional electronic hardware by, for example, bioware in molec- ular computing. In quantum computing, one uses systems small enough to exploit quantum-mechani- cal phenomena to perform computations and to perform secure communications more efficiently than classical physics and, hence, traditional hardware allows. -
Alan Turing 1 Alan Turing
Alan Turing 1 Alan Turing Alan Turing Turing at the time of his election to Fellowship of the Royal Society. Born Alan Mathison Turing 23 June 1912 Maida Vale, London, England, United Kingdom Died 7 June 1954 (aged 41) Wilmslow, Cheshire, England, United Kingdom Residence United Kingdom Nationality British Fields Mathematics, Cryptanalysis, Computer science Institutions University of Cambridge Government Code and Cypher School National Physical Laboratory University of Manchester Alma mater King's College, Cambridge Princeton University Doctoral advisor Alonzo Church Doctoral students Robin Gandy Known for Halting problem Turing machine Cryptanalysis of the Enigma Automatic Computing Engine Turing Award Turing test Turing patterns Notable awards Officer of the Order of the British Empire Fellow of the Royal Society Alan Mathison Turing, OBE, FRS ( /ˈtjʊərɪŋ/ TEWR-ing; 23 June 1912 – 7 June 1954), was a British mathematician, logician, cryptanalyst, and computer scientist. He was highly influential in the development of computer science, giving a formalisation of the concepts of "algorithm" and "computation" with the Turing machine, which can be considered a model of a general purpose computer.[1][2][3] Turing is widely considered to be the father of computer science and artificial intelligence.[4] During World War II, Turing worked for the Government Code and Cypher School (GC&CS) at Bletchley Park, Britain's codebreaking centre. For a time he was head of Hut 8, the section responsible for German naval cryptanalysis. He devised a number of techniques for breaking German ciphers, including the method of the bombe, an electromechanical machine that could find settings for the Enigma machine. -
IT 468 – Natural Computing
July 2020 IT 468 – Natural Computing Instructor Manish K Gupta (http://www.mankg.com) Room 2209 Faculty Block 2 mankg [at] daiict.ac.in Phone: +91-79-68261549 WhatsApp:+91-9898512703 Lab: http://www.guptalab.org Overview In last 60 years Information and Communication Technology (ICT) has had a great impact on our society. The most profound and accelerated impact of ICT can be seen in the last decade in the form of cell phones, connected computers and Internet. We even have a virtual currency. ICT is an interdisciplinary discipline combining IT (Information Technology) and CT (Communication Technology). IT has its root in computer science and CT has its root in theory of communication. Both the fields now can be seen as two sides of the same coin. Both deals with information, in IT we store (send information from now to then) and manipulate the information and in CT we send information from here to there (communicate). The mathematical principles of ICT lie in theoretical computer science (Turing machine) and information and coding theory (work of Shannon and Hamming). Realization of ICT is via logic gates and circuits in the area of Electronics and VLSI. If you look around the Nature around you many times you feel: What are the principles of Natural ICT? Can we use these principles to create Natural ICT engineering? We are fortunate enough that due to advancement of many fields we are now in a position to talk about Natural ICT. There are three main areas of Natural ICT: 1. ICT inspired by Nature 2. -
The Curator's Take on the Wonderful CAPTCHA Exhibition
The Curator’s Take on the Wonderful CAPTCHA Exhibition Nathan Zeldes, March 21, 2013 On Feb. 25, 2013, the CAPTCHA exhibition opened at the Bloomfield Science Museum in Jerusalem. Everyone was delighted: the dignitaries invited to the opening, the children who wasted no time to start exploring the exhibits, the adults who did the same at a more staid pace, the press, and of course the museum folks who had put in a huge effort to make it all a reality. We’ve pulled it off! Which was far from trivial. When I accepted the role of curator for this exhibition over a year earlier I had no idea how challenging the task would be; nor did the museum. I’d built a number of exhibitions about the history of technology before, but none involved such deep conceptual difficulties, and none were so intellectually rewarding and edifying. In this article I share the process we went through as we cracked the problems to come up with our exhibition, and I describe many of the exhibits we made, for the benefit of science educators. The entrance to the exhibition The challenge of the wooden blocks It all began as a response to International Alan Turing Year in 2012. Israeli computer scientists were intent on honoring the founder of their discipline with educational activities, and the Bloomfield Science Museum made the decision to bring up an exhibition in this context. The exhibition’s primary focus was to be Computer Science, not Turing himself; it was to introduce the scientific domain and tie it to Turing’s work and legacy.