A Novel Intronic Splice—Site Mutation of the CYP11A1 Gene Linked to Adrenal Insufficiency with 46,XY Disorder of Sex Developme

Total Page:16

File Type:pdf, Size:1020Kb

A Novel Intronic Splice—Site Mutation of the CYP11A1 Gene Linked to Adrenal Insufficiency with 46,XY Disorder of Sex Developme International Journal of Environmental Research and Public Health Case Report A Novel Intronic Splice—Site Mutation of the CYP11A1 Gene Linked to Adrenal Insufficiency with 46,XY Disorder of Sex Development Pawel Matusik 1,* , Agnieszka Gach 2 , Olimpia Zajdel-Cwynar 3, Iwona Pinkier 2, Grzegorz Kudela 4 and Aneta Gawlik 1 1 Department of Pediatrics and Pediatric Endocrinology, Faculty of Medical Sciences in Katowice, Medical University of Silesia, 40-752 Katowice, Poland; [email protected] 2 Department of Genetics, Polish Mother’s Memorial Hospital Research Institute, 93-338 Lodz, Poland; [email protected] (A.G.); [email protected] (I.P.) 3 Upper-Silesian Child’s Health Centre, 40-752 Katowice, Poland; [email protected] 4 Department of Pediatric Surgery and Urology, Faculty of Medical Sciences in Katowice, Medical University of Silesia, 40-752 Katowice, Poland; [email protected] * Correspondence: [email protected]; Tel.: +48-32-207-1654 Abstract: A novel CYP11A1: c.1236 + 5G > A was identified, expanding the mutation spectrum of the congenital adrenal insufficiency with 46,XY sex reversal. In a now 17-year-old girl delivered full-term (G2P2, parents unrelated), adrenal failure was diagnosed in the first year of life based on clinical picture of acute adrenal crisis with vomiting, dehydration, weight loss, hypotension, and electrolyte disturbances. At the time, hormonal tests revealed primary adrenocortical insufficiency and steroid Citation: Matusik, P.; Gach, A.; profiles showed lack of products of steroidogenesis, and since then the patient has been treated with Zajdel-Cwynar, O.; Pinkier, I.; Kudela, G.; Gawlik, A. A Novel Intronic substitution doses of hydrocortisone and fludrocortisone. At the age of 14, considering the absence Splice—Site Mutation of the CYP11A1 of puberty symptoms, extended diagnostic tests revealed elevated LH levels (26.5 mIU/mL) with Gene Linked to Adrenal Insufficiency pre-puberty FSH levels (4.9 mIU/mL), low estradiol (28 pmol/L), testosterone (<2.5 ng/mL), and with 46,XY Disorder of Sex extremely high levels of ACTH (4961 pg/mL). A cytogenetic study revealed a 46 XY karyotype. A Development. Int. J. Environ. Res. molecular examination confirmed the missense mutation and a novel splice-site mutation of CYP11A1 Public Health 2021, 18, 7186. gene. Compound heterozygosity for the CYP11A1 gene with a known pathogenic variant in one https://doi.org/10.3390/ijerph allele and a novel splice site mutation in the second allele is most probably responsible for congenital 18137186 adrenal insufficiency with 46,XY sex reversal. We discuss the necessity of cytogenetic test in the case of early onset of adrenal failure in the absence of steroidogenesis metabolites in the steroid profile. Academic Editor: Paul B. Tchounwou Keywords: CYP11A1 gene; disorder of sex development (DSD); congenital adrenal hyperplasia (CAH); Received: 4 May 2021 novel mutation Accepted: 1 July 2021 Published: 5 July 2021 Publisher’s Note: MDPI stays neutral 1. Introduction with regard to jurisdictional claims in published maps and institutional affil- Congenital adrenal hyperplasia (CAH) is a rare autosomal recessive disease caused by iations. mutations of genes for enzymes that are essential for steroidogenesis. The most severe form of CAH, characterized by the defect in both adrenal and sex steroids synthesis, is caused by mutation in the steroidogenic acute regulatory (StAR) protein and mutation in the cholesterol side-chain cleavage enzyme gene CYP11A1. The defect in StAR causes lipoid congenital adrenal hyperplasia (LCAH) with the characteristic massively enlarged adrenals Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. filled with lipids. Due to the deficiency of StAR protein, the transport of cholesterol to the This article is an open access article mitochondria is impaired and the conversion of cholesterol to pregnenolone is reduced. distributed under the terms and Consequently, steroidogenesis is impaired [1]. However, the first rate-limiting step in the conditions of the Creative Commons biosynthesis of steroid hormones is the conversion of cholesterol to pregnenolone catalyzed Attribution (CC BY) license (https:// by p450-mediated cholesterol side-chain cleavage enzyme (P450scc) coded by the CYP11A creativecommons.org/licenses/by/ gene. The highest P450scc activity is present in the adrenal cortex, corpus luteum, ovarian 4.0/). theca cells, and Leydig cells [2]. As pregnenolone is the precursor to all steroid hormones, a Int. J. Environ. Res. Public Health 2021, 18, 7186. https://doi.org/10.3390/ijerph18137186 https://www.mdpi.com/journal/ijerph Int. J. Environ. Res. Public Health 2021, 18, x FOR PEER REVIEW 2 of 8 Int. J. Environ. Res. Public Health 2021, 18, 7186 catalyzed by p450-mediated cholesterol side-chain cleavage enzyme (P450scc)2 of 7 coded by the CYP11A gene. The highest P450scc activity is present in the adrenal cortex, corpus luteum, ovarian theca cells, and Leydig cells [2]. As pregnenolone is the precursor to all steroid hormones, a homozygous CYP11A gene mutation leads to the lack of p450scc lead- homozygous CYP11Aing similargenely mutationto StAR deficiency, leads to the impaired lack of p450sccproduction leading of all similarly steroid hormones. to StAR The role of deficiency, impairedboth StAR production and p450scc of all steroid in the first hormones. steps of The steroidogenesis role of both StAR was andpresented p450scc in the Figure 1. in the first stepsSymptoms of steroidogenesis for both StAR was and presented p450scc in mutation the Figure include1. Symptoms life-threatening for both adrenal insuffi- StAR and p450sccciency mutation in early include infancy life-threatening and female phenotype adrenal insufficiency regardless of in their early sex infancy chromosome com- and female phenotypeplement. regardless In our study of their, we present sex chromosome a case of a complement.patient with 46,XY In our disorder study, we of sex develop- present a case ofment a patient (DSD) with harboring 46,XY one disorder known of missense sex development mutation (DSD) and one harboring novel intronic one splice-site known missensemutation mutation of andthe oneCYP11A1 novel gene, intronic with splice-site the primary mutation diagnosis of the ofCYP11A1 Addisongene,’s disease that was with the primaryadmitted diagnosis to our of Addison’sdepartment disease to evaluate that was the admitteddisease control to our and department possible tomodification of evaluate the diseasethe treatment. control and possible modification of the treatment. Cholesterol Outer membrane Inner membrane StAR movement intothe inner mitochondrialmembrane Cholesterol p450scc side-chain cleavage Pregnenolone MITOCHONDRIA Cor�sol Aldosterone Androgens FigureFigure 1. Two 1. initial Two stepsinitial of steps steroidogenesis of steroidogenesis related related to the StARto the andStAR p450scc and p450scc activity. activity. 2. Case Presentation2. Case Presentation Currently, a 17-year-oldCurrently, girl a 17 delivered-year-old full-termgirl delivered (G2P2, full parents-term (G2P2, unrelated) parents with unrelated) nor- with nor- mal birth parametersmal birth was parameters diagnosed was with diagnosed adrenal failurewith adrenal in the firstfailure year in ofthe life. first Family year of life. Family history of autoimmunehistory of diseasesautoimmune was negative.diseases wa Hyperpigmentations negative. Hyperpigmentation of the skin was of the re- skin was re- ported when sheported was when ~1 month she was old. ~1 month At the old. age At of the 10 age months, of 10 months, the child the had child an had acute an acute adrenal adrenal crisis withcrisis awith classic a classic symptomatology symptomatology (vomiting, (vomiting, dehydration, dehydration, weight weight loss, loss, hy- hypotension, potension, andand electrolyte electrolyte disturbances). disturbances). Hormonal Hormonal tests tests revealed revealed primary primary adrenocortical adrenocortical insuffi- insufficiency, andciency, steroid and profilessteroid profiles showed showed lack of lack products of products of steroidogenesis. of steroidogenesis. Classical Classical replace- replacement therapyment therapy with hydrocortisone with hydrocortisone and fludrocortisone and fludrocortisone has been has implemented.been implemented. In In January January 2014, the2014 girl, the was girl admitted was admitted to the to clinic the clinic to assess to assess the effectiveness the effectiveness of the of current the current doses of doses of medicationmedication used. used. Physical Physical examination examination demonstrated demonstrated skin hyperpigmentation,skin hyperpigmentation, obesity, obesity, pubertypuberty Tanner Tanner I, and femaleI, and female external external genitalia. genitalia. In the In absence the absence of puberty of puberty symp- symptoms, ele- toms, elevatedvated LH level LH (26.5level mIU/mL (26.5 mIU) with/mL) either with pre-pubertaleither pre-pubertal FSH and FSH estradiol and est levelradiol level (4.9 (4.9 mIU/mL andmIU28/mL pmol/L and 28, respectively) pmol/L, respectively) was a warning. was a warning. Moreover, Moreover, undetectable undetectable or very or very low low levels of testosteronelevels of testosterone (<2.5 ng/mL), (<2.5 DHEAS ng/mL), (<15 DHEASµg/dL), (<15 andµg/dl) 17-OH, and progesterone17-OH progesterone (0.59 (0.59 ng/mL) wereng/mL) noted. were In noted. the repeated In the repeated steroid profile, steroid apartprofile from, apart metabolites from meta derivedbolites derived from from substitutionsubstitution
Recommended publications
  • Pancreatic Fibroblast Heterogeneity: from Development to Cancer
    cells Review Pancreatic Fibroblast Heterogeneity: From Development to Cancer 1, 2, 2,3 Paloma E. Garcia y, Michael K. Scales y, Benjamin L. Allen and Marina Pasca di Magliano 2,3,4,* 1 Program in Molecular and Cellular Pathology, University of Michigan Medical School, University of Michigan, Ann Arbor, MI 48105, USA; [email protected] 2 Department of Cell and Developmental Biology, University of Michigan Medical School, University of Michigan, Ann Arbor, MI 48109, USA; [email protected] (M.K.S.); [email protected] (B.L.A.) 3 Rogel Cancer Center, Michigan Medicine, University of Michigan, Ann Arbor, MI 48109, USA 4 Department of Surgery, Michigan Medicine, University of Michigan, Ann Arbor, MI 48109, USA * Correspondence: [email protected]; Tel.: +1-734-276-7104 Authors contributed equally to this work. y Received: 22 October 2020; Accepted: 10 November 2020; Published: 12 November 2020 Abstract: Pancreatic ductal adenocarcinoma (PDA) is characterized by an extensive fibroinflammatory microenvironment that accumulates from the onset of disease progression. Cancer-associated fibroblasts (CAFs) are a prominent cellular component of the stroma, but their role during carcinogenesis remains controversial, with both tumor-supporting and tumor-restraining functions reported in different studies. One explanation for these contradictory findings is the heterogeneous nature of the fibroblast populations, and the different roles each subset might play in carcinogenesis. Here, we review the current literature on the origin and function of pancreatic fibroblasts, from the developing organ to the healthy adult pancreas, and throughout the initiation and progression of PDA. We also discuss clinical approaches to targeting fibroblasts in PDA. Keywords: fibroblasts; pancreas; cancer-associated fibroblasts; pancreas development; pancreatic cancer; tumor microenvironment; hedgehog; transforming growth factor Beta 1.
    [Show full text]
  • Further Delineation of Chromosomal Consensus Regions in Primary
    Leukemia (2007) 21, 2463–2469 & 2007 Nature Publishing Group All rights reserved 0887-6924/07 $30.00 www.nature.com/leu ORIGINAL ARTICLE Further delineation of chromosomal consensus regions in primary mediastinal B-cell lymphomas: an analysis of 37 tumor samples using high-resolution genomic profiling (array-CGH) S Wessendorf1,6, TFE Barth2,6, A Viardot1, A Mueller3, HA Kestler3, H Kohlhammer1, P Lichter4, M Bentz5,HDo¨hner1,PMo¨ller2 and C Schwaenen1 1Klinik fu¨r Innere Medizin III, Zentrum fu¨r Innere Medizin der Universita¨t Ulm, Ulm, Germany; 2Institut fu¨r Pathologie, Universita¨t Ulm, Ulm, Germany; 3Forschungsdozentur Bioinformatik, Universita¨t Ulm, Ulm, Germany; 4Abt. Molekulare Genetik, Deutsches Krebsforschungszentrum, Heidelberg, Germany and 5Sta¨dtisches Klinikum Karlsruhe, Karlsruhe, Germany Primary mediastinal B-cell lymphoma (PMBL) is an aggressive the expression of BSAP, BOB1, OCT2, PAX5 and PU1 was extranodal B-cell non-Hodgkin’s lymphoma with specific clin- added to the spectrum typical of PMBL features.9 ical, histopathological and genomic features. To characterize Genetically, a pattern of highly recurrent karyotype alterations further the genotype of PMBL, we analyzed 37 tumor samples and PMBL cell lines Med-B1 and Karpas1106P using array- with the hallmark of chromosomal gains of the subtelomeric based comparative genomic hybridization (matrix- or array- region of chromosome 9 supported the concept of a unique CGH) to a 2.8k genomic microarray. Due to a higher genomic disease entity that distinguishes PMBL from other B-cell non- resolution, we identified altered chromosomal regions in much Hodgkin’s lymphomas.10,11 Together with less specific gains on higher frequencies compared with standard CGH: for example, 2p15 and frequent mutations of the SOCS1 gene, a notable þ 9p24 (68%), þ 2p15 (51%), þ 7q22 (32%), þ 9q34 (32%), genomic similarity to classical Hodgkin’s lymphoma was þ 11q23 (18%), þ 12q (30%) and þ 18q21 (24%).
    [Show full text]
  • Multivariate Meta-Analysis of Differential Principal Components Underlying Human Primed and Naive-Like Pluripotent States
    bioRxiv preprint doi: https://doi.org/10.1101/2020.10.20.347666; this version posted October 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. October 20, 2020 To: bioRxiv Multivariate Meta-Analysis of Differential Principal Components underlying Human Primed and Naive-like Pluripotent States Kory R. Johnson1*, Barbara S. Mallon2, Yang C. Fann1, and Kevin G. Chen2*, 1Intramural IT and Bioinformatics Program, 2NIH Stem Cell Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland 20892, USA Keywords: human pluripotent stem cells; naive pluripotency, meta-analysis, principal component analysis, t-SNE, consensus clustering *Correspondence to: Dr. Kory R. Johnson ([email protected]) Dr. Kevin G. Chen ([email protected]) 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.20.347666; this version posted October 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. ABSTRACT The ground or naive pluripotent state of human pluripotent stem cells (hPSCs), which was initially established in mouse embryonic stem cells (mESCs), is an emerging and tentative concept. To verify this important concept in hPSCs, we performed a multivariate meta-analysis of major hPSC datasets via the combined analytic powers of percentile normalization, principal component analysis (PCA), t-distributed stochastic neighbor embedding (t-SNE), and SC3 consensus clustering.
    [Show full text]
  • Supplemental Materials ZNF281 Enhances Cardiac Reprogramming
    Supplemental Materials ZNF281 enhances cardiac reprogramming by modulating cardiac and inflammatory gene expression Huanyu Zhou, Maria Gabriela Morales, Hisayuki Hashimoto, Matthew E. Dickson, Kunhua Song, Wenduo Ye, Min S. Kim, Hanspeter Niederstrasser, Zhaoning Wang, Beibei Chen, Bruce A. Posner, Rhonda Bassel-Duby and Eric N. Olson Supplemental Table 1; related to Figure 1. Supplemental Table 2; related to Figure 1. Supplemental Table 3; related to the “quantitative mRNA measurement” in Materials and Methods section. Supplemental Table 4; related to the “ChIP-seq, gene ontology and pathway analysis” and “RNA-seq” and gene ontology analysis” in Materials and Methods section. Supplemental Figure S1; related to Figure 1. Supplemental Figure S2; related to Figure 2. Supplemental Figure S3; related to Figure 3. Supplemental Figure S4; related to Figure 4. Supplemental Figure S5; related to Figure 6. Supplemental Table S1. Genes included in human retroviral ORF cDNA library. Gene Gene Gene Gene Gene Gene Gene Gene Symbol Symbol Symbol Symbol Symbol Symbol Symbol Symbol AATF BMP8A CEBPE CTNNB1 ESR2 GDF3 HOXA5 IL17D ADIPOQ BRPF1 CEBPG CUX1 ESRRA GDF6 HOXA6 IL17F ADNP BRPF3 CERS1 CX3CL1 ETS1 GIN1 HOXA7 IL18 AEBP1 BUD31 CERS2 CXCL10 ETS2 GLIS3 HOXB1 IL19 AFF4 C17ORF77 CERS4 CXCL11 ETV3 GMEB1 HOXB13 IL1A AHR C1QTNF4 CFL2 CXCL12 ETV7 GPBP1 HOXB5 IL1B AIMP1 C21ORF66 CHIA CXCL13 FAM3B GPER HOXB6 IL1F3 ALS2CR8 CBFA2T2 CIR1 CXCL14 FAM3D GPI HOXB7 IL1F5 ALX1 CBFA2T3 CITED1 CXCL16 FASLG GREM1 HOXB9 IL1F6 ARGFX CBFB CITED2 CXCL3 FBLN1 GREM2 HOXC4 IL1F7
    [Show full text]
  • Retinoic Acid Induces Sertoli Cell Paracrine Signals for Spermatogonia Differentiation but Cell Autonomously Drives Spermatocyte Meiosis
    Retinoic acid induces Sertoli cell paracrine signals for spermatogonia differentiation but cell autonomously drives spermatocyte meiosis Mathilde Raverdeaua, Aurore Gely-Pernota, Betty Féreta, Christine Dennefelda, Gérard Benoitb, Irwin Davidsona, Pierre Chambona,1, Manuel Marka,c, and Norbert B. Ghyselincka,1 aInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Centre National de la Recherche Scientifique Unité Mixte de Recherche 7104, Institut National de la Santé et de la Recherche Médicale Unité 964, Université de Strasbourg, F-67404 Illkirch Cedex, France; bCentre de Génétique et de Physiologie Moléculaire et Cellulaire, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5534, Université de Lyon 1, F-69622 Villeurbanne Cedex, France; and cHôpitaux Universitaires de Strasbourg, F-67091 Strasbourg Cedex, France Contributed by Pierre Chambon, August 29, 2012 (sent for review July 26, 2012) Direct evidence for a role of endogenous retinoic acid (RA), the active a recent study showing that female GC can enter meiosis in a fetal metabolite of vitamin A in the initial differentiation and meiotic entry ovary devoid of RA has challenged this model (6). of spermatogonia, and thus in the initiation of spermatogenesis is still During embryonic development RA usually acts in a paracrine lacking. RA is synthesized by dedicated enzymes, the retinaldehyde manner, one cell type controlling its synthesis, whereas a neigh- dehydrogenases (RALDH), and binds to and activates nuclear RA bor cell type responds to the signal (7). In cells synthesizing RA, receptors (RARA, RARB, and RARG) either within the RA-synthesizing conversion of retinol to its active metabolite depends upon ret- cells or in the neighboring cells.
    [Show full text]
  • Cells Using Gene Expression Profiling and Insulin Gene Methylation
    RESEARCH ARTICLE Comparison of enteroendocrine cells and pancreatic β-cells using gene expression profiling and insulin gene methylation ☯ ☯ Gyeong Ryul Ryu , Esder Lee , Jong Jin Kim, Sung-Dae MoonID, Seung-Hyun Ko, Yu- Bae Ahn, Ki-Ho SongID* Division of Endocrinology & Metabolism, Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Korea ☯ These authors contributed equally to this work. a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 a1111111111 Abstract Various subtypes of enteroendocrine cells (EECs) are present in the gut epithelium. EECs and pancreatic β-cells share similar pathways of differentiation during embryonic develop- ment and after birth. In this study, similarities between EECs and β-cells were evaluated in OPEN ACCESS detail. To obtain specific subtypes of EECs, cell sorting by flow cytometry was conducted Citation: Ryu GR, Lee E, Kim JJ, Moon S-D, Ko S- from STC-1 cells (a heterogenous EEC line), and each single cell was cultured and pas- H, Ahn Y-B, et al. (2018) Comparison of saged. Five EEC subtypes were established according to hormone expression, measured enteroendocrine cells and pancreatic β-cells using by quantitative RT-PCR and immunostaining: L, K, I, G and S cells expressing glucagon-like gene expression profiling and insulin gene methylation. PLoS ONE 13(10): e0206401. https:// peptide-1, glucose-dependent insulinotropic polypeptide, cholecystokinin, gastrin and doi.org/10.1371/journal.pone.0206401 secretin, respectively. Each EEC subtype was found to express not only the corresponding Editor: Wataru Nishimura, International University gut hormone but also other gut hormones. Global microarray gene expression profiles of Health and Welfare School of Medicine, JAPAN revealed a higher similarity between each EEC subtype and MIN6 cells (a β-cell line) than Received: March 29, 2018 between C2C12 cells (a myoblast cell line) and MIN6 cells, and all EEC subtypes were highly similar to each other.
    [Show full text]
  • Ten Commandments for a Good Scientist
    Unravelling the mechanism of differential biological responses induced by food-borne xeno- and phyto-estrogenic compounds Ana María Sotoca Covaleda Wageningen 2010 Thesis committee Thesis supervisors Prof. dr. ir. Ivonne M.C.M. Rietjens Professor of Toxicology Wageningen University Prof. dr. Albertinka J. Murk Personal chair at the sub-department of Toxicology Wageningen University Thesis co-supervisor Dr. ir. Jacques J.M. Vervoort Associate professor at the Laboratory of Biochemistry Wageningen University Other members Prof. dr. Michael R. Muller, Wageningen University Prof. dr. ir. Huub F.J. Savelkoul, Wageningen University Prof. dr. Everardus J. van Zoelen, Radboud University Nijmegen Dr. ir. Toine F.H. Bovee, RIKILT, Wageningen This research was conducted under the auspices of the Graduate School VLAG Unravelling the mechanism of differential biological responses induced by food-borne xeno- and phyto-estrogenic compounds Ana María Sotoca Covaleda Thesis submitted in fulfillment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. dr. M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Tuesday 14 September 2010 at 4 p.m. in the Aula Unravelling the mechanism of differential biological responses induced by food-borne xeno- and phyto-estrogenic compounds. Ana María Sotoca Covaleda Thesis Wageningen University, Wageningen, The Netherlands, 2010, With references, and with summary in Dutch. ISBN: 978-90-8585-707-5 “Caminante no hay camino, se hace camino al andar. Al andar se hace camino, y al volver la vista atrás se ve la senda que nunca se ha de volver a pisar” - Antonio Machado – A mi madre.
    [Show full text]
  • Investigation of the Underlying Hub Genes and Molexular Pathogensis in Gastric Cancer by Integrated Bioinformatic Analyses
    bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423656; this version posted December 22, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Investigation of the underlying hub genes and molexular pathogensis in gastric cancer by integrated bioinformatic analyses Basavaraj Vastrad1, Chanabasayya Vastrad*2 1. Department of Biochemistry, Basaveshwar College of Pharmacy, Gadag, Karnataka 582103, India. 2. Biostatistics and Bioinformatics, Chanabasava Nilaya, Bharthinagar, Dharwad 580001, Karanataka, India. * Chanabasayya Vastrad [email protected] Ph: +919480073398 Chanabasava Nilaya, Bharthinagar, Dharwad 580001 , Karanataka, India bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423656; this version posted December 22, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract The high mortality rate of gastric cancer (GC) is in part due to the absence of initial disclosure of its biomarkers. The recognition of important genes associated in GC is therefore recommended to advance clinical prognosis, diagnosis and and treatment outcomes. The current investigation used the microarray dataset GSE113255 RNA seq data from the Gene Expression Omnibus database to diagnose differentially expressed genes (DEGs). Pathway and gene ontology enrichment analyses were performed, and a proteinprotein interaction network, modules, target genes - miRNA regulatory network and target genes - TF regulatory network were constructed and analyzed. Finally, validation of hub genes was performed. The 1008 DEGs identified consisted of 505 up regulated genes and 503 down regulated genes.
    [Show full text]
  • HOXB6 Homeo Box B6 HOXB5 Homeo Box B5 WNT5A Wingless-Type
    5 6 6 5 . 4 2 1 1 1 2 4 6 4 3 2 9 9 7 0 5 7 5 8 6 4 0 8 2 3 1 8 3 7 1 0 0 4 0 2 5 0 8 7 5 4 1 1 0 3 6 0 4 8 3 7 4 7 6 9 6 7 1 5 0 8 1 4 1 1 7 1 0 0 4 2 0 8 1 1 1 2 5 3 5 0 7 2 6 9 1 2 1 8 3 5 2 9 8 0 6 0 9 5 1 9 9 2 1 1 6 0 2 3 0 3 6 9 1 6 5 5 7 1 1 2 1 1 7 5 4 6 6 4 1 1 2 8 4 7 1 6 2 7 7 5 4 3 2 4 3 6 9 4 1 7 1 3 4 1 2 1 3 1 1 4 7 3 1 1 1 1 5 3 2 6 1 5 1 3 5 4 5 2 3 1 1 6 1 7 3 2 5 4 3 1 6 1 5 3 1 7 6 5 1 1 1 4 6 1 6 2 7 2 1 2 e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a a S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S S HOXB6 homeo box B6 HOXB5 homeo box B5 WNT5A wingless-type MMTV integration site family, member 5A WNT5A wingless-type MMTV integration site family, member 5A FKBP11 FK506 binding protein 11, 19 kDa EPOR erythropoietin receptor SLC5A6 solute carrier family 5 sodium-dependent vitamin transporter, member 6 SLC5A6 solute carrier family 5 sodium-dependent vitamin transporter, member 6 RAD52 RAD52 homolog S.
    [Show full text]
  • Identification of Potential Key Genes and Pathway Linked with Sporadic Creutzfeldt-Jakob Disease Based on Integrated Bioinformatics Analyses
    medRxiv preprint doi: https://doi.org/10.1101/2020.12.21.20248688; this version posted December 24, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Identification of potential key genes and pathway linked with sporadic Creutzfeldt-Jakob disease based on integrated bioinformatics analyses Basavaraj Vastrad1, Chanabasayya Vastrad*2 , Iranna Kotturshetti 1. Department of Biochemistry, Basaveshwar College of Pharmacy, Gadag, Karnataka 582103, India. 2. Biostatistics and Bioinformatics, Chanabasava Nilaya, Bharthinagar, Dharwad 580001, Karanataka, India. 3. Department of Ayurveda, Rajiv Gandhi Education Society`s Ayurvedic Medical College, Ron, Karnataka 562209, India. * Chanabasayya Vastrad [email protected] Ph: +919480073398 Chanabasava Nilaya, Bharthinagar, Dharwad 580001 , Karanataka, India NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. medRxiv preprint doi: https://doi.org/10.1101/2020.12.21.20248688; this version posted December 24, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Abstract Sporadic Creutzfeldt-Jakob disease (sCJD) is neurodegenerative disease also called prion disease linked with poor prognosis. The aim of the current study was to illuminate the underlying molecular mechanisms of sCJD. The mRNA microarray dataset GSE124571 was downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were screened.
    [Show full text]
  • The Staurotypus Turtles and Aves Share the Same Origin of Sex Chromosomes but Evolved Different Types of Heterogametic Sex Determination
    The Staurotypus Turtles and Aves Share the Same Origin of Sex Chromosomes but Evolved Different Types of Heterogametic Sex Determination Taiki Kawagoshi1, Yoshinobu Uno1, Chizuko Nishida2, Yoichi Matsuda1,3* 1 Laboratory of Animal Genetics, Department of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan, 2 Department of Natural History Sciences, Faculty of Science, Hokkaido University, Sapporo, Japan, 3 Avian Bioscience Research Center, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan Abstract Reptiles have a wide diversity of sex-determining mechanisms and types of sex chromosomes. Turtles exhibit temperature- dependent sex determination and genotypic sex determination, with male heterogametic (XX/XY) and female heterogametic (ZZ/ZW) sex chromosomes. Identification of sex chromosomes in many turtle species and their comparative genomic analysis are of great significance to understand the evolutionary processes of sex determination and sex chromosome differentiation in Testudines. The Mexican giant musk turtle (Staurotypus triporcatus, Kinosternidae, Testudines) and the giant musk turtle (Staurotypus salvinii) have heteromorphic XY sex chromosomes with a low degree of morphological differentiation; however, their origin and linkage group are still unknown. Cross-species chromosome painting with chromosome-specific DNA from Chinese soft-shelled turtle (Pelodiscus sinensis) revealed that the X and Y chromosomes of S. triporcatus have homology with P. sinensis chromosome 6, which corresponds to the chicken Z chromosome. We cloned cDNA fragments of S. triporcatus homologs of 16 chicken Z-linked genes and mapped them to S. triporcatus and S. salvinii chromosomes using fluorescence in situ hybridization. Sixteen genes were localized to the X and Y long arms in the same order in both species.
    [Show full text]
  • G Protein-Coupled Estrogen Receptor Is Not Required for Sex Determination Or Ovary
    bioRxiv preprint doi: https://doi.org/10.1101/373092; this version posted July 20, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: G protein-coupled estrogen receptor is not required for sex determination or ovary function in zebrafish Authors: Camerron M. Crowder1,$, Shannon N. Romano1,* and Daniel A. Gorelick2,# Affiliations: 1Department of Pharmacology & Toxicology, University of Alabama at Birmingham, Birmingham Alabama, USA 2Center for Precision Environmental Health, Department of Molecular & Cellular Biology, Baylor College of Medicine, Houston, Texas, USA *present address: Department of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA $present address: Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, Birmingham Alabama, USA #corresponding author: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/373092; this version posted July 20, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. ABSTRACT Estrogens regulate vertebrate development and function through binding to nuclear estrogen receptors alpha and beta (ERa, ERb) and the G protein-coupled estrogen receptor (GPER). Studies in mutant animal models demonstrated that ERa and ERb are required for normal ovary development and function.
    [Show full text]