Biogeography & Forest Ecology of the Bladen
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Biodiversity Baseline in the Different Stages of the Project for the 10 Most Important Species
Drafted by: November 2018 Baseline report of amphibians, reptiles, and Haptanthus hazlettii Jilamito Hydroelectric Project Baseline study of amphibians, reptiles and the arboreal species Haptanthus hazlettii in the site of the Jilamito Hydroelectric Project FINAL REPORT Research team: Ricardo Matamoros (Main Coordinator) José Mario Solís Ramos (Herpetologist – Field Coordinator) Carlos M. O'Reilly (Botanist) Josué Ramos Galdámez (Herpetologist) Juan José Rodríguez (Field Technician) Dilma Daniela Rivera (Field Technician) Rony E. Valle (Field Technician) Technical support team and local guides: Hegel Velásquez (INGELSA Technician) - Forest Engineer Omar Escalante (INGELSA Environmental Technician) Nelson Serrano (ICF Tela Technician) Mauro Zavala (PROLANSATE Technician) Alberto Ramírez (Field Guide) José Efraín Sorto (Field Guide) Juan Ramírez (Field Guide) Agustín Sorto Natarén (Field Guide) Manuel Sorto Natarén (Field Guide) José Hernán Flores (Field Guide) Photos on the cover: The arboreal species, Haptanthus hazlettii, found in bloom. In the pictures we observe: Plectrohyla chrysopleura (Climbing frog), Atlantihyla spinipollex (Ceiba stream frog), Duellmanohyla salvavida (Honduran brook frog), Pleistioson sumichrastri (blue tail lizard), Bothriechis guifarroi (green Tamagas, palm viper). 2 Baseline report of amphibians, reptiles, and Haptanthus hazlettii Jilamito Hydroelectric Project 1 Content 2. SUMMARY ...................................................................................................................... 5 3. INTRODUCTION -
Contribution to the Biosystematics of Celtis L. (Celtidaceae) with Special Emphasis on the African Species
Contribution to the biosystematics of Celtis L. (Celtidaceae) with special emphasis on the African species Ali Sattarian I Promotor: Prof. Dr. Ir. L.J.G. van der Maesen Hoogleraar Plantentaxonomie Wageningen Universiteit Co-promotor Dr. F.T. Bakker Universitair Docent, leerstoelgroep Biosystematiek Wageningen Universiteit Overige leden: Prof. Dr. E. Robbrecht, Universiteit van Antwerpen en Nationale Plantentuin, Meise, België Prof. Dr. E. Smets Universiteit Leiden Prof. Dr. L.H.W. van der Plas Wageningen Universiteit Prof. Dr. A.M. Cleef Wageningen Universiteit Dr. Ir. R.H.M.J. Lemmens Plant Resources of Tropical Africa, WUR Dit onderzoek is uitgevoerd binnen de onderzoekschool Biodiversiteit. II Contribution to the biosystematics of Celtis L. (Celtidaceae) with special emphasis on the African species Ali Sattarian Proefschrift ter verkrijging van de graad van doctor op gezag van rector magnificus van Wageningen Universiteit Prof. Dr. M.J. Kropff in het openbaar te verdedigen op maandag 26 juni 2006 des namiddags te 16.00 uur in de Aula III Sattarian, A. (2006) PhD thesis Wageningen University, Wageningen ISBN 90-8504-445-6 Key words: Taxonomy of Celti s, morphology, micromorphology, phylogeny, molecular systematics, Ulmaceae and Celtidaceae, revision of African Celtis This study was carried out at the NHN-Wageningen, Biosystematics Group, (Generaal Foulkesweg 37, 6700 ED Wageningen), Department of Plant Sciences, Wageningen University, the Netherlands. IV To my parents my wife (Forogh) and my children (Mohammad Reza, Mobina) V VI Contents ——————————— Chapter 1 - General Introduction ....................................................................................................... 1 Chapter 2 - Evolutionary Relationships of Celtidaceae ..................................................................... 7 R. VAN VELZEN; F.T. BAKKER; A. SATTARIAN & L.J.G. VAN DER MAESEN Chapter 3 - Phylogenetic Relationships of African Celtis (Celtidaceae) ........................................ -
CYCADACEAE Palm-Like Dioecious Plants, the Caudex Bulb
CYCADACEAE Palm-like dioecious plants, the caudex bulb-like, tuber like or columnar, simple or branched, few or several leaves borne from the apex; leaves spirally arranged, often a dense crown on the apex of the stem, coriaceous, pinnate or bipinnate, the leaflets usually linear or lanceolate, entire or dentate; inflo rescence borne at the apex of the caudex or lateral, cone-like, the pistillate eones broader than the staminate ones. Three genera native in Central America and about nine in the tropics of the world. Ceratozamia mexicana Brongn. is an attractive plant of Mexico and Guatemala that should be in cultivation. Dioon mejiae Standl. & L. Wms. Ceiba 1: 37. 1950. Teosinte, palma teosinte. The Indians of Olancho, Honduras, where the plant is native, boil and grind the large chestnut-like seeds and make of them a kind of tortilla of good flavor and agreeable to eat. The leaves are in demand for decorating altars and for funeral wreaths. Becoming widely distributed as an ornamental. The common name given for this plant is usually that applied to Euchlaena mexicana. Zamia loddigesii Miq. Tijdschr. Nat. Geschied. 10: 73. 1843. Camotillo, cocalito, teosinte, chacuhua. The large starchy roots are said to be used in poisoning rodents in Petén. There are reports of their use in criminal poisonings which may be or not based on fact. Standley reports that "It is stated, further, that if the root has been out of the ground three days, they cause death in three days; if dug ten days, they kill in ten days, and so on." The coastal Caribs have used the roots as food, after cooking. -
Molecular Phylogenetics and Character Evolution of Cannabaceae
TAXON 62 (3) • June 2013: 473–485 Yang & al. • Phylogenetics and character evolution of Cannabaceae Molecular phylogenetics and character evolution of Cannabaceae Mei-Qing Yang,1,2,3 Robin van Velzen,4,5 Freek T. Bakker,4 Ali Sattarian,6 De-Zhu Li1,2 & Ting-Shuang Yi1,2 1 Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, P.R. China 2 Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, P.R. China 3 University of Chinese Academy of Sciences, Beijing 100093, P.R. China 4 Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands 5 Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands 6 Department of Natural Resources, Gonbad University, Gonbad Kavous 4971799151, Iran Authors for correspondence: Ting-Shuang Yi, [email protected]; De-Zhu Li, [email protected] Abstract Cannabaceae includes ten genera that are widely distributed in tropical to temperate regions of the world. Because of limited taxon and character sampling in previous studies, intergeneric phylogenetic relationships within this family have been poorly resolved. We conducted a molecular phylogenetic study based on four plastid loci (atpB-rbcL, rbcL, rps16, trnL-trnF) from 36 ingroup taxa, representing all ten recognized Cannabaceae genera, and six related taxa as outgroups. The molecular results strongly supported this expanded family to be a monophyletic group. All genera were monophyletic except for Trema, which was paraphyletic with respect to Parasponia. The Aphananthe clade was sister to all other Cannabaceae, and the other genera formed a strongly supported clade further resolved into a Lozanella clade, a Gironniera clade, and a trichotomy formed by the remaining genera. -
Species Harvested, Wood Volume Removed, and a Rare Endemic Tree (Haptanthus) from a Honduran Lowland Forest Donald L. Hazlett1
Species Harvested, Wood Volume Removed, and a Rare Endemic Tree (Haptanthus) from a Honduran Lowland Forest Donald L. Hazlett1 Abstract. For at least a century, the area of tropical American lowland forests has been in decline. One reason for this decline is logging. Logging operations in Honduras are rarely associated with botanical expeditions that identify the timber and non-timber species. This article documents the common and scientific names of trees harvested from a north-coast Honduran lowland forests from 1972-1979. During these nine years more than 50 tree species were harvested and more than 68,900 m3 of wood was extracted. The origins of the common names for many of the utilized timber trees are discussed. The most exploited trees were two species of Virola (V. koschnyi and V. guatemalensis), which comprised more than 54% of the total extracted wood volume. In second place was Ceiba pentandra with more than 23% of the extracted wood. Huertea cf. cubensis and Sterculia mexicana trees were cut and utilized before they were known to occur in Honduras. A previously unknown endemic tree was collected from this logged area in 1980. This species has primitive angiosperm traits and was described as Haptanthus hazlettii (Buxaceae) in 1989. It was presumed to be extinct several decades, but was rediscovered in 2010. The original discovery, subsequent interest, and the current status of 44 known individuals of this endemic and endangered species are discussed. Primitive traits and the first complete taxonomic description (with fruits) for this taxon are included. Other little known native and endemic plants that occur in this region, especially species with ethnobotanical uses are discussed. -
A New Miocene Malpighialean Tree from Panama
Rodriguez-ReyesIAWA Journal et al. – New38 (4), Miocene 2017: malpighialean437–455 wood 437 Panascleroticoxylon crystallosa gen. et sp. nov.: a new Miocene malpighialean tree from Panama Oris Rodriguez-Reyes1, 2, Peter Gasson3, Carolyn Thornton4, Howard J. Falcon-Lang5, and Nathan A. Jud6 1Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Ancón Republic of Panamá 2Facultad de Ciencias Naturales, Exactas y Tecnología, Universidad de Panamá, Apartado 000 17, Panamá 0824, Panamá 3Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, United Kingdom 4Florissant Fossil Beds National Monument, P.O. Box 185, 15807 Teller County Road 1, Florissant, CO 80816, U.S.A. 5Department of Earth Sciences, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom 6L.H. Bailey Hortorium, Department of Plant Biology, 412 Mann Library Building, Cornell University, Ithaca, NY 14853, U.S.A. *Corresponding author; e-mail: [email protected] ABSTRACT We report fossil wood specimens from two Miocene sites in Panama, Central America: Hodges Hill (Cucaracha Formation; Burdigalian, c.19 Ma) and Lago Alajuela (Alajuela Formation; Tortonian, c.10 Ma), where material is preserved as calcic and silicic permineralizations, respectively. The fossils show an unusual combination of features: diffuse porous vessel arrangement, simple perforation plates, alternate intervessel pitting, vessel–ray parenchyma pits either with much reduced borders or similar to the intervessel pits, abundant sclerotic tyloses, rays markedly heterocellular with long uniseriate tails, and rare to absent axial parenchyma. This combination of features allows assignment of the fossils to Malpighiales, and we note similarities with four predominantly tropical families: Salicaceae, Achariaceae, and especially, Phyllanthaceae, and Euphorbiaceae. -
Forest Regeneration on the Osa Peninsula, Costa Rica Manette E
University of Connecticut OpenCommons@UConn Master's Theses University of Connecticut Graduate School 12-27-2012 Forest Regeneration on the Osa Peninsula, Costa Rica Manette E. Sandor University of Connecticut, [email protected] Recommended Citation Sandor, Manette E., "Forest Regeneration on the Osa Peninsula, Costa Rica" (2012). Master's Theses. 369. https://opencommons.uconn.edu/gs_theses/369 This work is brought to you for free and open access by the University of Connecticut Graduate School at OpenCommons@UConn. It has been accepted for inclusion in Master's Theses by an authorized administrator of OpenCommons@UConn. For more information, please contact [email protected]. Forest Regeneration on the Osa Peninsula, Costa Rica Manette Eleasa Sandor A.B., Vassar College, 2004 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science At the University of Connecticut 2012 i APPROVAL PAGE Masters of Science Thesis Forest Regeneration on the Osa Peninsula, Costa Rica Presented by Manette Eleasa Sandor, A.B. Major Advisor________________________________________________________________ Robin L. Chazdon Associate Advisor_____________________________________________________________ Robert K. Colwell Associate Advisor_____________________________________________________________ Michael R. Willig University of Connecticut 2012 ii Acknowledgements Funding for this project was provided through the Connecticut State Museum of Natural History Student Research Award and the Blue Moon Fund. Both Osa Conservation and Lapa Ríos Ecolodge and Wildlife Resort kindly provided the land on which various aspects of the project took place. Three herbaria helpfully provided access to their specimens: Instituto Nacional de Biodiversidad (INBio) in Costa Rica, George Safford Torrey Herbarium at the University of Connecticut, and the Harvard University Herbaria. -
Multilayered Structure of Tension Wood Cell Walls in Salicaceae Sensu Lato
Multilayered structure of tension wood cell walls in Salicaceae sensu lato and its taxonomic significance Barbara Ghislain, Eric-André Nicolini, Raïssa Romain, Julien Ruelle, Arata Yoshinaga, Mac H. Alford, Bruno Clair To cite this version: Barbara Ghislain, Eric-André Nicolini, Raïssa Romain, Julien Ruelle, Arata Yoshinaga, et al.. Mul- tilayered structure of tension wood cell walls in Salicaceae sensu lato and its taxonomic significance. Botanical Journal of the Linnean Society, Linnean Society of London, 2016, 182 (4), pp.744-756. 10.1111/boj.12471. hal-01392845 HAL Id: hal-01392845 https://hal.archives-ouvertes.fr/hal-01392845 Submitted on 4 Nov 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Multilayered structure of tension wood cell walls in Salicaceae sensu lato and its taxonomic significance Barbara Ghislain1*, Eric-André Nicolini2, Raïssa Romain1, Julien Ruelle3, Arata Yoshinaga4, Mac H. Alford5, Bruno Clair1 1 CNRS, UMR EcoFoG, AgroParisTech, Cirad, INRA, Université des Antilles, Université de Guyane, 97310 Kourou, France 2 CIRAD, AMAP, botAnique et bioinforMatique de l’Architecture des Plantes, Campus Agronomique BP 701, 97387 Kourou, French Guiana, France 3 INRA, Laboratoire d’Etude des Ressources Forêt-Bois (LERFoB), 54280 Champenoux, Nancy, France 4 Laboratory of Tree Cell Biology, Graduate School of Agriculture, Kyoto University, Sakyo- ku, Kyoto 606-8502, Japan 5 Department of Biological Sciences, University of Southern Mississippi, 118 College Drive #5018, Hattiesburg, Mississippi 39406, U.S.A. -
Plant DNA Barcodes and a Community Phylogeny of a Tropical Forest Dynamics Plot in Panama
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama W. John Kressa,1, David L. Ericksona, F. Andrew Jonesb,c, Nathan G. Swensond, Rolando Perezb, Oris Sanjurb, and Eldredge Berminghamb aDepartment of Botany, MRC-166, National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington, DC 20013-7012; bSmithsonian Tropical Research Institute, P.O. Box 0843-03092, Balboa Anco´n, Republic of Panama´; cImperial College London, Silwood Park Campus, Buckhurst Road, Ascot, Berkshire SL5 7PY, United Kingdom; and dCenter for Tropical Forest Science - Asia Program, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, MA 02138 Communicated by Daniel H. Janzen, University of Pennsylvania, Philadelphia, PA, September 3, 2009 (received for review May 13, 2009) The assembly of DNA barcode libraries is particularly relevant pling: the conserved coding locus will easily align over all taxa within species-rich natural communities for which accurate species in a community sample to establish deep phylogenetic branches identifications will enable detailed ecological forensic studies. In whereas the hypervariable region of the DNA barcode will align addition, well-resolved molecular phylogenies derived from these more easily within nested subsets of closely related species and DNA barcode sequences have the potential to improve investiga- permit relationships to be inferred among the terminal branches tions of the mechanisms underlying community assembly and of the tree. functional trait evolution. To date, no studies have effectively In this respect a supermatrix design (8, 9) is ideal for using a applied DNA barcodes sensu strictu in this manner. In this report, mixture of coding genes and intergenic spacers for phylogenetic we demonstrate that a three-locus DNA barcode when applied to reconstruction across the broadest evolutionary distances, as in 296 species of woody trees, shrubs, and palms found within the the construction of community phylogenies (10). -
Etfrn News 27
ETFRN NEWS 27 European Tropical Forest Research Network ETFRN NEWS 27 ETFRN-News is a quarterly publication of the European Tropical Forest Research Network: Editor: Willemine Brinkman About ETFRN Editorial assistance:Evelyn Whyte National Focal Points Jelle Maas Directory ETFRN Newsletter ETFRN Coordination Unit ETFRN Workshops c/o The Tropenbos Foundation ETFRN Publications P.O. Box 232 6700 AE Wageningen/ The Netherlands Q & A Service Tel.:+31-317-41 30 33 Add links Fax:+31-317-41 20 99 E-mail: [email protected] Topics Regions CONTENTS EU Commission Editorial Vacancies ETFRN and European Commission News Funding / Grants Training Courses Organisations, Institutions and Projects Conference calendar Non-timber forest plant resource assessment in North West Amazonia Palm heart harvesting in Guyana's North-West District Search Mesoscale landscape patterns and biodiversity recovery Site map Restoration of tropical dry andean forest by accelerating natural successioni Home Optimal management of agroforestry systems E-mail us Stand dynamics and management of fast growing tree species in central america Research Cooperation Sought Internet Features Other news Publications http://www.etfrn.org/etfrn/newsletter/frames/nl27.html[22-10-2012 11:52:01] ETFRN NEWS 27 European Tropical Forest Research Network Newsletter 27 Editorial About ETFRN Dear readers, National Focal Points Directory ETFRN Newsletter For millenia, forests have been an important resource for the peoples of Latin America, and they still ETFRN Workshops are. The region's forests are also important for the rest of the world. Their effect on global climate is ETFRN Publications still poorly understood, and this is the subject of at least one large international research programme. -
Investigation of the Genomics of Gender Regulation in Populus
INVESTIGATION OF THE GENOMICS OF GENDER REGULATION IN POPULUS TRICHOCARPA by Nyssa A. Temmel B.Sc. (Hons) University of Victoria, 2002 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Botany) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) December 2011 © Nyssa A. Temmel, 2011 Abstract This thesis reports the findings of four projects conducted to study the genomics of gender regulation in Populus trichocarpa. Sex-linked markers previously discovered in Salix vimilanis were tested to determine if they were also sex-linked in other Salix species and P. trichocarpa. It was found that the DNA sequence of the SCAR 354 marker, and its position at the 5’ end of a gene encoding an Ssu72-like protein, was conserved with some SFP variability in species of Salix and P. trichocarpa. While this marker may be useful for phylogenetic or population studies in Salix, this marker was not sex-linked in the species investigated in this study. An investigation of genes located on the telomeric end of chromosome 19, the putative sex chromosome in P. trichocarpa, was conducted to look for gender-biased SNPs that would indicate recombination suppression in the region on a sex locus. A large variability in the number of SNPs was observed in the gene sequences studied, but no SNPs that segregated with gender were discovered so a genetic marker that could be used to sex P. trichocarpa individuals of unknown gender could not be developed. Using a microarray approach, gender-biased gene-expression was studied in leaf tissue of P. -
Genetic and Taxonomic Incongruences in Mediterranean Endemic Flora: Four Different Case Studies
UNIVERSITÀ DEGLI STUDI DELLA TUSCIA DI VITERBO DIPARTIMENTO DI SCIENZE E TECNOLOGIE PER L'AGRICOLTURA, LE FORESTE, LA NATURA E L'ENERGIA (DAFNE) Corso di Dottorato di Ricerca in Scienze e tecnologie per la gestione forestale e ambientale - XXV Ciclo. Genetic and taxonomic incongruences in Mediterranean endemic flora: four different case studies s.s.d. AGR/05 Tesi di dottorato di : Dott. Tamara Kirin Coordinatore del corso Tutore Prof. Rosanna Bellarosa Prof. Bartolomeo Schirone 7 Maggio 2013 Preface PREFACE The Mediterranean Basin is a region of great biodiversity. Around 10% of all the existing plant species in the world inhabit this small area. This amazing fact provides opportunities for continuous botanical studies and analyses. Long and complex geological history and long-term climate of the Mediterranean offer a vast number of particular microhabitats inhabited by isolated, highly specialised species and subspecies. High genetic richness appears to be another particularity of the area which is still being recognised and investigated. This is why I decided to study genetic variation of four different Mediterranean species complexes. The selected species include herbaceous and woody taxa, as well as Gymnosperms and Angiosperms. European Black Pine ( Pinus nigra Arnold.) and Aleppo Pine ( Pinus halepensis Mill.), ancient gymnosperms, represent two of the core species of the Mediterranean. Despite similarly high importance in habitats they occupy, areas which they inhabit are very different, resulting in different ecology and life-history traits of these two species. European Nettle Tree ( Celtis australis L.), though not exclusively a Mediterranean species, represents an important element of the Mediterranean vegetation and has had an important role for the local inhabitants, from the time of the first settlers till today (alimentary, wood, spiritual and horticultural).