Aberrations of TBX2-CHK2-P53 Signaling Pathway and Its Role In

Total Page:16

File Type:pdf, Size:1020Kb

Aberrations of TBX2-CHK2-P53 Signaling Pathway and Its Role In JOURNAL OF SURGICAL ONCOLOGY | ISSN 2674-3000 Available online at www.sciencerepository.org Science Repository Research Article Aberrations of TBX2-CHK2-p53 Signaling Pathway and its Role in Malignant Peripheral Nerve Sheath Tumors Xiaoling Du1#, Ting Li2,3,4,5#, Fangyuan Chang2,3,4,5#, Chao Zhang2,3,4,5, Hongji Dai3,4,5,6 and Jilong Yang2,3,4,5* 1Department of Diagnostics, Tianjin Medical University, Tianjin, P.R. China 2Departments of Bone and Soft Tissue Tumor, Tianjin Medical University Cancer Institute and Hospital, Tianjin, P.R. China 3National Clinical Research Center for Cancer,Tianjin Medical University Cancer Institute and Hospital, Tianjin, P.R. China 4Key Laboratory of Molecular Cancer Epidemiology, Tianjin, P.R. China 5Key Laboratory of Cancer Prevention and Therapy, Tianjin’s Clinical Research Center for Cancer, Tianjin, P.R. China 6Epidemiology and Biostatistics, Tianjin Medical University Cancer Institute and Hospital, Tianjin, P.R. China #Contributed equally A R T I C L E I N F O A B S T R A C T Article history: Background and Objectives: The dismal outcome of malignant peripheral nerve sheath tumor (MPNST) Received: 10 April, 2020 highlights the necessity of identifying new biomarkers and pathogenesis for this aggressive sarcoma. Accepted: 27 April, 2020 Therefore, it is necessary to detect the aberrations of the TBX2-CHK2-p53 pathway and investigate its Published: 29 April, 2020 biological role in MPNST. Keywords: Methods: Genetic aberrations of TBX2, CHK2 and p53 were detected by next generation sequencing Malignant peripheral nerve sheath (NGS) in 10 MPNST samples. Protein expression of TBX2, CHK2, p53, Ki-67 and cyclin D1 were assessed tumor by immunohistochemistry (IHC) in 63 MPNST samples. next generation sequencing Results: Our present data demonstrated that there were gene mutations of TBX2, CHK2 and p53 in MPNST TBX2 samples. TBX2 expression was correlated with American Joint Committee on Cancer (AJCC) stage, CHK2 recurrence and metastasis. Correlation analysis found that TBX2 was positively correlated with CHK2 proliferation (p=0.045) and CHK2 was positively correlated with p53 (p=0.006). Furthermore, both CHK2 and p53 were positively correlated with Ki-67 (p<0.05), which is related to tumor differentiation, metastasis and prognosis. As for survival analyses, patients with high TBX2, CHK2 and p53 expression exhibited shorter disease-free survival (DFS) and overall survival (OS), respectively (p<0.05) and TBX2 and CHK2 were independent prognostic factors for MPNST patients (p<0.05). Conclusion: There are genetic aberrations of the TBX2-CHK2-p53 signaling pathway in MPNST, which might promote the progression of MPNST by increasing Ki-67 expression. Thus, TBX2 and CHK2 might be useful markers for MPNST. © 2020 Jilong Yang. Hosting by Science Repository. All rights reserved. Introduction They occur either sporadically, in association with neurofibromatosis type 1 (NF1), or subsequent to radiation therapy [8-10]. Because of Malignant peripheral nerve sheath tumor (MPNST) is a subtype of soft invasive growth, propensity to metastasis, and limited sensitivity to tissue sarcoma of ectomesenchyme origin, arising from peripheral nerve chemotherapy and radiation, MPNST has a poor prognosis [11, 12]. branches or sheaths of peripheral nerve fibers [1, 2]. The overall Therefore, the identification of novel biomarkers and investigation of incidence of MPNST in the general population is 1/100000 and it pathogenesis are required to further understand this aggressive sarcoma. accounts for approximately 5–10% of all soft tissue sarcomas [1-7]. *Correspondence to: Prof. Jilong Yang, M.D., Ph.D. Department of Bone and Soft Tissue Tumor, Tianjin Medical University Cancer Hospital and Institute, Huanhuxi Road, Tianjin 300060, P.R. China; Tel: +86022233401231081; E-mail: [email protected] © 2020 Jilong Yang. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Hosting by Science Repository. All rights reserved. http://dx.doi.org/10.31487/j.JSO.2020.02.09 Aberrations of TBX2-CHK2-p53 in MPNST 2 The developmentally important transcription factor T-box2 (TBX2) has in the pathogenesis of MPNST is rarely reported. In this study, we been suggested as a novel anticancer drug target as it is overexpressed in detected the genetic abnormalities of the TBX2-CHK2-p53 pathway by several cancers and possesses strong anti-senescence and pro- next generation sequencing (NGS) and measured the expression of the proliferative functions [13-17]. However, it is reported that TBX2 corresponding proteins in the MPNST samples by represses PTEN by directly binding to its promoter and recruiting the immunohistochemistry (IHC) to evaluate their roles in MPNST. Our histone deacetylase, HDAC1, in rhabdomyosarcoma (RMS) [18]. data suggest that there exist mutations of TBX2, CHK2, and p53 genes Therefore, TBX2 works as a central component of the PTEN/PI3K/AKT and TBX2-CHK2-p53 pathway may promote tumor cell proliferation by signaling pathway deregulation in RMS cells and targeting TBX2 in increasing expression of Ki-67. RMS tumors may offer a novel therapeutic approach for RMS [18]. It is also reported that EGR1 interacts with TBX2 in RMS and the interaction Materials and Methods inhibits EGR1 dependent gene expression, which includes the cell cycle regulators p21 and PTEN as well as other important cell growth drivers I Patients and Tissue Specimens such as NDRG1 and CST6 [19]. So, it is still controversial about the role of TBX2 in carcinoma and sarcoma. All tissues and information collection took place with the ethical approval of the Institutional Review Boards (IRBs) at Tianjin Medical In an attempt to identify whether the overexpression of endogenous University Cancer Institute and Hospital (TMUCIH) and with the TBX2 is associated with cisplatin resistance in TBX2-driven cancers, S Helsinki Declaration of 1975, as revised in 1983. All patients included Wansleben et al. demonstrated that TBX2 is positioned upstream of in the study provided informed written consent [22, 23]. Sixty-three CHK2-p53, which is essential for the cisplatin-induced activation of formalin-fixed paraffin-embedded tissue (FFPE) MPNST samples and CHK2 and p53 [20]. Knocking down TBX2 in cisplatin-resistant breast matching patient records were acquired from Tianjin Medical University cancer cell line MCF-7 leads to the reduction of phosphorylated CHK2 Cancer Institute and Hospital. All samples were evaluated by two and p53 and then an abrogation of an S-phase arrest but a robust G2/M pathologists (one from each institution) to confirm the diagnosis and arrest, which prevent DNA repair and result in TBX2-deficient cells ensure that each specimen contained at least 90% of the tumor. entering mitosis with damaged DNA and consequently undergoing mitotic catastrophe, sensitizing the cells to cisplatin [20]. TBX2 Patient information collected included sex, age, NF1 status, tumor expression may also serve as a predictive marker of the efficacy of location, largest diameter of the tumor, clinical AJCC (American Joint platinum-based chemotherapy for patients with ovarian serous Committee on Cancer) stage of the tumor, time to recurrence, metastatic carcinoma [21]. status and treatments [1, 22]. The presence of the NF-1 syndrome was determined by the NIH criteria [9, 24]. Ten fresh tumor samples with Although the TBX2-CHK2-p53 pathway has been demonstrated to be qualified DNA quality were selected from the above 63 cases of tissue involved in the drug sensitivity, deterioration and proliferation of samples and subjected to the NGS (Table 1). The tumor sequencing of different cancers, the biological role of the TBX2-CHK2-p53 pathway two different locations was performed in patient no. 7. Table1: Clinical data of 10 cases MPNST samples. Number Pathology number Gender age NF1 type Recurrence Metastasis 1 319319 female 66 no no yes 2 315522 female 52 no yes no 4 302304 male 45 no yes no 6 293733 male 15 no yes yes 7-1 311856 male 36 yes yes no 7-2 267878 male 36 yes yes no 8 301886 male 23 yes yes yes 10 298929 female 16 no yes no 11 301346 male 51 no no no 12 309486 male 32 no no no II Follow-Up III Next Generation Sequencing The patients with MPNST were followed up by interview at the clinic or The DNA extraction kit was purchased from Qiagen, Germany. DNA by phone call. Regional tumor recurrence, distant metastasis, and patient extraction is done by our employees [22]. Then, the prepared DNA survival were recorded. The disease-free survival (DFS) was defined as working solution was sent to BGI (Shenzhen, China) for sequencing, and the time from diagnosis until the occurrence of recurrence or metastasis. the sequencing data was used for bioinformatics analysis. For overall survival (OS) analysis, the duration was defined as the time from diagnosis to death or the last follow-up. During follow-up, 41 IV Immunohistochemistry and Protein Expression Evaluation patients (65.1%) had a disease progression (recurrence or/and metastasis), 36(57.1%) patients died of progressive disease and 20 Immunohistochemical staining (IHC) was performed using the (31.7%) patients still alive, 7 (11.1%) patients were lost to follow up. streptavidin-peroxidase (SP) method. The primary antibodies used were Journal of Surgical Oncology doi: 10.31487/j.JSO.2020.02.09 Volume 3(2): 2-10 Aberrations of TBX2-CHK2-p53 in MPNST 3 as follows: anti-TBX2(1:50, Novusbiologicals, CA, USA), anti-CHK2 V Statistical Analysis (1:200, Abcam, San Francisco, CA, USA), anti-p53 (1:100, Abcam Company, San Francisco, CA, USA), anti-Ki-67 (1:50, Beijing Zhong Analyses were conducted using SPSS 22.0 software for Windows (SPSS Shan Golden Bridge Biotechnology Co. Ltd, China) and anti-cyclinD1 Inc., Chicago, IL, USA). The correlation of protein expression with (1:50, Beijing Zhong Shan Golden Bridge Biotechnology Co.Ltd, clinicopathological characteristics was determined by Pearson’s chi- China).
Recommended publications
  • Core Transcriptional Regulatory Circuitries in Cancer
    Oncogene (2020) 39:6633–6646 https://doi.org/10.1038/s41388-020-01459-w REVIEW ARTICLE Core transcriptional regulatory circuitries in cancer 1 1,2,3 1 2 1,4,5 Ye Chen ● Liang Xu ● Ruby Yu-Tong Lin ● Markus Müschen ● H. Phillip Koeffler Received: 14 June 2020 / Revised: 30 August 2020 / Accepted: 4 September 2020 / Published online: 17 September 2020 © The Author(s) 2020. This article is published with open access Abstract Transcription factors (TFs) coordinate the on-and-off states of gene expression typically in a combinatorial fashion. Studies from embryonic stem cells and other cell types have revealed that a clique of self-regulated core TFs control cell identity and cell state. These core TFs form interconnected feed-forward transcriptional loops to establish and reinforce the cell-type- specific gene-expression program; the ensemble of core TFs and their regulatory loops constitutes core transcriptional regulatory circuitry (CRC). Here, we summarize recent progress in computational reconstitution and biologic exploration of CRCs across various human malignancies, and consolidate the strategy and methodology for CRC discovery. We also discuss the genetic basis and therapeutic vulnerability of CRC, and highlight new frontiers and future efforts for the study of CRC in cancer. Knowledge of CRC in cancer is fundamental to understanding cancer-specific transcriptional addiction, and should provide important insight to both pathobiology and therapeutics. 1234567890();,: 1234567890();,: Introduction genes. Till now, one critical goal in biology remains to understand the composition and hierarchy of transcriptional Transcriptional regulation is one of the fundamental mole- regulatory network in each specified cell type/lineage.
    [Show full text]
  • Tbx2 Is Essential for Patterning the Atrioventricular Canal and for Morphogenesis of the Outflow Tract During Heart Development Zachary Harrelson1, Robert G
    Research article 5041 Tbx2 is essential for patterning the atrioventricular canal and for morphogenesis of the outflow tract during heart development Zachary Harrelson1, Robert G. Kelly1, Sarah N. Goldin1, Jeremy J. Gibson-Brown1,2,3, Roni J. Bollag3,4, Lee M. Silver3 and Virginia E. Papaioannou1,* 1Department of Genetics and Development, College of Physicians and Surgeons of Columbia University, New York, NY 10032, USA 2Department of Biology, Washington University, St Louis, MO 63130, USA 3Department of Molecular Biology, Lewis Thomas Laboratory, Princeton University, Princeton, NJ 08544, USA 4Institute of Molecular Genetics and Development, Medical College of Georgia, Augusta, GA 30912, USA *Author for correspondence (e-mail: [email protected]) Accepted 29 July 2004 Development 131, 5041-5052 Published by The Company of Biologists 2004 doi:10.1242/dev.01378 Summary Tbx2 is a member of the T-box transcription factor gene that Tbx2 is required to repress chamber differentiation in family, and is expressed in a variety of tissues and organs the atrioventricular canal at 9.5 dpc. Analysis of during embryogenesis. In the developing heart, Tbx2 is homozygous mutants also highlights a role for Tbx2 during expressed in the outflow tract, inner curvature, hindlimb digit development. Despite evidence that TBX2 atrioventricular canal and inflow tract, corresponding to negatively regulates the cell cycle control genes Cdkn2a, a myocardial zone that is excluded from chamber Cdkn2b and Cdkn1a in cultured cells, there is no evidence differentiation at 9.5 days post coitus (dpc). We have used that loss of Tbx2 function during mouse development targeted mutagenesis in mice to investigate Tbx2 function.
    [Show full text]
  • To Study Mutant P53 Gain of Function, Various Tumor-Derived P53 Mutants
    Differential effects of mutant TAp63γ on transactivation of p53 and/or p63 responsive genes and their effects on global gene expression. A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science By Shama K Khokhar M.Sc., Bilaspur University, 2004 B.Sc., Bhopal University, 2002 2007 1 COPYRIGHT SHAMA K KHOKHAR 2007 2 WRIGHT STATE UNIVERSITY SCHOOL OF GRADUATE STUDIES Date of Defense: 12-03-07 I HEREBY RECOMMEND THAT THE THESIS PREPARED UNDER MY SUPERVISION BY SHAMA KHAN KHOKHAR ENTITLED Differential effects of mutant TAp63γ on transactivation of p53 and/or p63 responsive genes and their effects on global gene expression BE ACCEPTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF Master of Science Madhavi P. Kadakia, Ph.D. Thesis Director Daniel Organisciak , Ph.D. Department Chair Committee on Final Examination Madhavi P. Kadakia, Ph.D. Steven J. Berberich, Ph.D. Michael Leffak, Ph.D. Joseph F. Thomas, Jr., Ph.D. Dean, School of Graduate Studies 3 Abstract Khokhar, Shama K. M.S., Department of Biochemistry and Molecular Biology, Wright State University, 2007 Differential effect of TAp63γ mutants on transactivation of p53 and/or p63 responsive genes and their effects on global gene expression. p63, a member of the p53 gene family, known to play a role in development, has more recently also been implicated in cancer progression. Mice lacking p63 exhibit severe developmental defects such as limb truncations, abnormal skin, and absence of hair follicles, teeth, and mammary glands. Germline missense mutations of p63 have been shown to be responsible for several human developmental syndromes including SHFM, EEC and ADULT syndromes and are associated with anomalies in the development of organs of epithelial origin.
    [Show full text]
  • Epigenetic Reprogramming of Tumor-Associated Fibroblasts in Lung Cancer: Therapeutic Opportunities
    cancers Review Epigenetic Reprogramming of Tumor-Associated Fibroblasts in Lung Cancer: Therapeutic Opportunities Jordi Alcaraz 1,2,3,*, Rafael Ikemori 1 , Alejandro Llorente 1 , Natalia Díaz-Valdivia 1 , Noemí Reguart 2,4 and Miguel Vizoso 5,* 1 Unit of Biophysics and Bioengineering, Department of Biomedicine, School of Medicine and Health Sciences, Universitat de Barcelona, 08036 Barcelona, Spain; [email protected] (R.I.); [email protected] (A.L.); [email protected] (N.D.-V.) 2 Thoracic Oncology Unit, Hospital Clinic Barcelona, 08036 Barcelona, Spain; [email protected] 3 Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), 08028 Barcelona, Spain 4 Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), 08036 Barcelona, Spain 5 Division of Molecular Pathology, Oncode Institute, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands * Correspondence: [email protected] (J.A.); [email protected] (M.V.) Simple Summary: Lung cancer is the leading cause of cancer death among both men and women, partly due to limited therapy responses. New avenues of knowledge are indicating that lung cancer cells do not form a tumor in isolation but rather obtain essential support from their surrounding host tissue rich in altered fibroblasts. Notably, there is growing evidence that tumor progression and even the current limited responses to therapies could be prevented by rescuing the normal behavior of fibroblasts, which are critical housekeepers of normal tissue function. For this purpose, it is key Citation: Alcaraz, J.; Ikemori, R.; to improve our understanding of the molecular mechanisms driving the pathologic alterations of Llorente, A.; Díaz-Valdivia, N.; fibroblasts in cancer.
    [Show full text]
  • TBX2 Represses CST6 Resulting in Uncontrolled Legumain
    www.impactjournals.com/oncotarget/ Oncotarget, Vol. 5, No. 6 TBX2 represses CST6 resulting in uncontrolled legumain activity to sustain breast cancer proliferation: a novel cancer-selective target pathway with therapeutic opportunities. Zenobia C. D’Costa1, Catherine Higgins1, Chee Wee Ong1, Gareth W. Irwin1, David Boyle1, Darragh G. McArt1, Karen McCloskey1, Niamh E. Buckley1, Nyree T. Crawford1, Lalitha Thiagarajan3, James T. Murray2, Richard D. Kennedy1, Karl A. Mulligan4, D. Paul Harkin1, David J.J. Waugh1, Chris J. Scott5, Manuel Salto- Tellez1, Richard Williams1 and Paul B. Mullan1 1 Centre for Cancer Research and Cell Biology, Queen’s University Belfast, Belfast, UK 2 Biomedical Science Institute, Trinity College Dublin, College Green, Dublin 2, Ireland 3 School of Biological Sciences, Queen’s University Belfast, Belfast, UK 4 Northern Ireland Science Park, Belfast, UK 5 School of Pharmacy, Queen’s University Belfast, Belfast, UK Correspondence to: Paul B. Mullan, email: [email protected]. Keywords: TBX2, CST6, LGMN, breast cancer Received: December 16, 2013 Accepted:February 6, 2014 Published: February 8, 2014 This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT TBX2 is an oncogenic transcription factor known to drive breast cancer proliferation. We have identified the cysteine protease inhibitor Cystatin 6 (CST6) as a consistently repressed TBX2 target gene, co-repressed through a mechanism involving Early Growth Response 1 (EGR1). Exogenous expression of CST6 in TBX2- expressing breast cancer cells resulted in significant apoptosis whilst non-tumorigenic breast cells remained unaffected.
    [Show full text]
  • Differential Spatio-Temporal Regulation of T-Box Gene Expression by Micrornas During Cardiac Development
    Journal of Cardiovascular Development and Disease Article Differential Spatio-Temporal Regulation of T-Box Gene Expression by microRNAs during Cardiac Development Mohamad Alzein, Estefanía Lozano-Velasco , Francisco Hernández-Torres , Carlos García-Padilla , Jorge N. Domínguez , Amelia Aránega and Diego Franco * Cardiovascular Development Group, Department of Experimental Biology, University of Jaen, 23071 Jaen, Spain; [email protected] (M.A.); [email protected] (E.L.-V.); [email protected] (F.H.-T.); [email protected] (C.G.-P.); [email protected] (J.N.D.); [email protected] (A.A.) * Correspondence: [email protected] Abstract: Cardiovascular development is a complex process that starts with the formation of symmet- rically located precardiac mesodermal precursors soon after gastrulation and is completed with the formation of a four-chambered heart with distinct inlet and outlet connections. Multiple transcrip- tional inputs are required to provide adequate regional identity to the forming atrial and ventricular chambers as well as their flanking regions; i.e., inflow tract, atrioventricular canal, and outflow tract. In this context, regional chamber identity is widely governed by regional activation of distinct T-box family members. Over the last decade, novel layers of gene regulatory mechanisms have been discovered with the identification of non-coding RNAs. microRNAs represent the most well-studied subcategory among short non-coding RNAs. In this study, we sought to investigate the functional role of distinct microRNAs that are predicted to target T-box family members. Our data demonstrated a highly dynamic expression of distinct microRNAs and T-box family members during cardiogenesis, revealing a relatively large subset of complementary and similar microRNA–mRNA expression pro- Citation: Alzein, M.; Lozano-Velasco, files.
    [Show full text]
  • Proximal Tubule Translational Profiling During Kidney Fibrosis Reveals Pro- Inflammatory and Lncrna Expression Patterns with Sexual Dimorphism
    BASIC RESEARCH www.jasn.org Proximal Tubule Translational Profiling during Kidney Fibrosis Reveals Proinflammatory and Long Noncoding RNA Expression Patterns with Sexual Dimorphism Haojia Wu,1,2 Chun-Fu Lai,1,2,3 Monica Chang-Panesso,1,2 and Benjamin D. Humphreys 1,2,4 1Division of Nephrology, Departments of 2Medicine and 4Developmental Biology, Washington University in St. Louis School of Medicine, St. Louis, Missouri; and 3Renal Division, Department of Internal Medicine, National Taiwan University Hospital, Taipai, Taiwan ABSTRACT Background Proximal tubule injury can initiate CKD, with progression rates that are approximately 50% faster in males versus females. The precise transcriptional changes in this nephron segment during fibrosis and potential differences between sexes remain undefined. Methods We generated mice with proximal tubule–specific expression of an L10a ribosomal subunit pro- tein fused with enhanced green fluorescent protein. We performed unilateral ureteral obstruction surgery on four male and three female mice to induce inflammation and fibrosis, collected proximal tubule–specific and bulk cortex mRNA at day 5 or 10, and sequenced samples to a depth of 30 million reads. We applied computational methods to identify sex-biased and shared molecular responses to fibrotic injury, including up- and downregulated long noncoding RNAs (lncRNAs) and transcriptional regulators, and used in situ hybridization to validate critical genes and pathways. Results We identified .17,000 genes in each proximal tubule group, including 145 G-protein–coupled receptors. More than 700 transcripts were differentially expressed in the proximal tubule of males versus females. The .4000 genes displaying altered expression during fibrosis were enriched for proinflam- matory and profibrotic pathways.
    [Show full text]
  • A Massively Parallel Reporter Assay Reveals Context-Dependent Activity of Homeodomain Binding Sites in Vivo
    Downloaded from genome.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press A MASSIVELY PARALLEL REPORTER ASSAY REVEALS CONTEXT-DEPENDENT ACTIVITY OF HOMEODOMAIN BINDING SITES IN VIVO Andrew E. O. Hughes1, Connie A. Myers1, and Joseph C. Corbo1* 1Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri 63110, USA *To whom correspondence should be addressed. Tel: +1 314 362 6254; Fax: +1 314 362 4096; Email: [email protected] Running title: Context-dependent activity of CRX binding sites Key words: homeodomain, cis-regulatory element, massively parallel reporter assay, transcription factor binding site, retina 1 Downloaded from genome.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press ABSTRACT Cone-rod homeobox (CRX) is a paired-like homeodomain transcription factor (TF) and a master regulator of photoreceptor development in vertebrates. The in vitro DNA binding preferences of CRX have been described in detail, but the degree to which in vitro binding affinity is correlated with in vivo enhancer activity is not known. In addition, paired-class homeodomain TFs can bind DNA cooperatively as both homodimers and heterodimers at inverted TAAT half-sites separated by two or three nucleotides. This dimeric configuration is thought to mediate target specificity, but whether monomeric and dimeric sites encode distinct levels of activity is not known. Here, we used a massively parallel reporter assay to determine how local sequence context shapes the regulatory activity of CRX binding sites in mouse photoreceptors. We assayed inactivating mutations in >1,700 TF binding sites and found that dimeric CRX binding sites act as stronger enhancers than monomeric CRX binding sites.
    [Show full text]
  • Tbx2 Mediates Dorsal Patterning and Germ Layer Suppression Through
    Reich et al. BMC Molecular and Cell Biology (2020) 21:39 BMC Molecular and https://doi.org/10.1186/s12860-020-00282-1 Cell Biology RESEARCH ARTICLE Open Access Tbx2 mediates dorsal patterning and germ layer suppression through inhibition of BMP/GDF and Activin/Nodal signaling Shoshana Reich1, Peter Kayastha2, Sushma Teegala2 and Daniel C. Weinstein1,2* Abstract Background: Members of the T-box family of DNA-binding proteins play a prominent role in the differentiation of the three primary germ layers. VegT, Brachyury, and Eomesodermin function as transcriptional activators and, in addition to directly activating the transcription of endoderm- and mesoderm-specific genes, serve as regulators of growth factor signaling during induction of these germ layers. In contrast, the T-box gene, tbx2, is expressed in the embryonic ectoderm, where Tbx2 functions as a transcriptional repressor and inhibits mesendodermal differentiation by the TGFβ ligand Activin. Tbx2 misexpression also promotes dorsal ectodermal fate via inhibition of the BMP branch of the TGFβ signaling network. Results: Here, we report a physical association between Tbx2 and both Smad1 and Smad2, mediators of BMP and Activin/Nodal signaling, respectively. We perform structure/function analysis of Tbx2 to elucidate the roles of both Tbx2-Smad interaction and Tbx2 DNA-binding in germ layer suppression. Conclusion: Our studies demonstrate that Tbx2 associates with intracellular mediators of the Activin/Nodal and BMP/GDF pathways. We identify a novel repressor domain within Tbx2, and have determined that Tbx2 DNA- binding activity is required for repression of TGFβ signaling. Finally, our data also point to overlapping yet distinct mechanisms for Tbx2-mediated repression of Activin/Nodal and BMP/GDF signaling.
    [Show full text]
  • Amacrine, Horizontal, and Retinal Ganglion Cells
    Biochemistry and Molecular Biology Jmjd3 Plays Pivotal Roles in the Proper Development of Early-Born Retinal Lineages: Amacrine, Horizontal, and Retinal Ganglion Cells Toshiro Iwagawa,1 Hiroaki Honda,2 and Sumiko Watanabe1 1Division of Molecular and Developmental Biology, Institute of Medical Science, University of Tokyo, Tokyo, Japan 2Field of Human Disease Models, Major in Advanced Life Sciences and Medicine, Institute of Laboratory Animals, Tokyo Women’s Medical University, Tokyo, Japan Correspondence: Sumiko Watanabe, PURPOSE. Trimethylation of histone H3 at lysine 27 (H3K27me3) is a critical mediator Division of Molecular and of transcriptional gene repression, and Jmjd3 and Utx are the demethylases specific to Developmental Biology, Institute of H3K27me3. Using an in vitro retinal explant culture system, we previously revealed the Medical Science, The University of role of Jmjd3 in the development of rod bipolar cells; however, the roles of Jmjd3 in the Tokyo, 4-6-1 Shirokanedai, development of early-born retinal cells are unknown due to limitations concerning the Minato-ku, Tokyo 108-8639, Japan; [email protected]. use of retinal explant culture systems. In this study, we investigated the roles of Jmjd3 in the development of early-born retinal cells. Received: April 12, 2020 Accepted: September 14, 2020 METHODS. We examined retina-specific conditional Jmjd3 knockout (Jmjd3-cKO) mice Published: September 28, 2020 using immunohistochemistry and quantitative reverse transcription PCR and JMJD3 bind- ing to a target locus by chromatin immunoprecipitation analysis. Citation: Iwagawa T, Honda H, Watanabe S. Jmjd3 plays pivotal RESULTS. We observed reductions in amacrine cells (ACs) and horizontal cells (HCs), as roles in the proper development of well as lowered expression levels of several transcription factors involved in the devel- early-born retinal lineages: opment of ACs and HCs in the Jmjd3-cKO mouse retina.
    [Show full text]
  • Tbx2 Directly Represses the Expression of the P21waf1 Cyclin-Dependent Kinase Inhibitor
    [CANCER RESEARCH 64, 1669–1674, March 1, 2004] Tbx2 Directly Represses the Expression of the p21WAF1 Cyclin-Dependent Kinase Inhibitor Sharon Prince,1,2 Suzanne Carreira,1 Keith W. Vance,1 Amaal Abrahams,2 and Colin R. Goding1 1Signalling and Development Laboratory, Marie Curie Research Institute, Oxted, Surrey, United Kingdom, and 2Division of Medical Biochemistry, Institute for Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa ABSTRACT cycle arrest, apoptosis, and senescence, and deregulation of compo- nents of these key cell cycle regulators can contribute to cancer. The T-box factors play a crucial role in the development of many tissues, p21WAF1/CIP1/SDI1 cdk inhibitor (referred to as p21) is induced in and mutations in T-box factor genes have been implicated in multiple differentiating cells and in response to a wide variety of cellular human disorders. Some T-box factors have been implicated in cancer; for example, Tbx2 and Tbx3 can suppress replicative senescence, whereas stresses including DNA damage, and contributes to stress-induced Tbx3 can cooperate with Myc and Ras in cellular transformation. The growth arrest (24, 25). The promoter of the p21 gene can be induced p21WAF1 cyclin-dependent kinase inhibitor plays a key role in senescence via p53 (26), and p21 expression is necessary for p53-mediated and in cell cycle arrest after DNA damage. Here, using a combination of growth arrest (27–30). In contrast to the p16 cdk inhibitor, mutation of in vitro DNA-binding, transfection, and chromatin immunoprecipitation the p21 gene in human cancers occurs infrequently, and mice lacking assays, we show that Tbx2 can bind and repress the p21 promoter in vitro p21 appear to undergo normal development, with no increase in the and in vivo.
    [Show full text]
  • Regulation Pathway of Mesenchymal Stem Cell Immune Dendritic Cell
    Downloaded from http://www.jimmunol.org/ by guest on September 26, 2021 is online at: average * The Journal of Immunology , 13 of which you can access for free at: 2010; 185:5102-5110; Prepublished online 1 from submission to initial decision 4 weeks from acceptance to publication October 2010; doi: 10.4049/jimmunol.1001332 http://www.jimmunol.org/content/185/9/5102 Inhibition of Immune Synapse by Altered Dendritic Cell Actin Distribution: A New Pathway of Mesenchymal Stem Cell Immune Regulation Alessandra Aldinucci, Lisa Rizzetto, Laura Pieri, Daniele Nosi, Paolo Romagnoli, Tiziana Biagioli, Benedetta Mazzanti, Riccardo Saccardi, Luca Beltrame, Luca Massacesi, Duccio Cavalieri and Clara Ballerini J Immunol cites 38 articles Submit online. Every submission reviewed by practicing scientists ? is published twice each month by Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts http://jimmunol.org/subscription http://www.jimmunol.org/content/suppl/2010/10/01/jimmunol.100133 2.DC1 This article http://www.jimmunol.org/content/185/9/5102.full#ref-list-1 Information about subscribing to The JI No Triage! Fast Publication! Rapid Reviews! 30 days* Why • • • Material References Permissions Email Alerts Subscription Supplementary The Journal of Immunology The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2010 by The American Association of
    [Show full text]