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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Can Parietin Transfer Energy Radiatively to Photosynthetic Pigments?
molecules Communication Can Parietin Transfer Energy Radiatively to Photosynthetic Pigments? Beatriz Fernández-Marín 1, Unai Artetxe 1, José María Becerril 1, Javier Martínez-Abaigar 2, Encarnación Núñez-Olivera 2 and José Ignacio García-Plazaola 1,* ID 1 Department Plant Biology and Ecology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain; [email protected] (B.F.-M.); [email protected] (U.A.); [email protected] (J.M.B.) 2 Faculty of Science and Technology, University of La Rioja (UR), 26006 Logroño (La Rioja), Spain; [email protected] (J.M.-A.); [email protected] (E.N.-O.) * Correspondence: [email protected]; Tel.: +34-94-6015319 Received: 22 June 2018; Accepted: 16 July 2018; Published: 17 July 2018 Abstract: The main role of lichen anthraquinones is in protection against biotic and abiotic stresses, such as UV radiation. These compounds are frequently deposited as crystals outside the fungal hyphae and most of them emit visible fluorescence when excited by UV. We wondered whether the conversion of UV into visible fluorescence might be photosynthetically used by the photobiont, thereby converting UV into useful energy. To address this question, thalli of Xanthoria parietina were used as a model system. In this species the anthraquinone parietin accumulates in the outer upper cortex, conferring the species its characteristic yellow-orange colouration. In ethanol, parietin absorbed strongly in the blue and UV-B and emitted fluorescence in the range 480–540 nm, which partially matches with the absorption spectra of photosynthetic pigments. In intact thalli, it was determined by confocal microscopy that fluorescence emission spectra shifted 90 nm towards longer wavelengths. -
Diversity and Distribution of Lichen-Associated Fungi in the Ny-Ålesund Region (Svalbard, High Arctic) As Revealed by 454 Pyrosequencing
www.nature.com/scientificreports OPEN Diversity and distribution of lichen- associated fungi in the Ny-Ålesund Region (Svalbard, High Arctic) as Received: 31 March 2015 Accepted: 20 August 2015 revealed by 454 pyrosequencing Published: 14 October 2015 Tao Zhang1, Xin-Li Wei2, Yu-Qin Zhang1, Hong-Yu Liu1 & Li-Yan Yu1 This study assessed the diversity and distribution of fungal communities associated with seven lichen species in the Ny-Ålesund Region (Svalbard, High Arctic) using Roche 454 pyrosequencing with fungal-specific primers targeting the internal transcribed spacer (ITS) region of the ribosomal rRNA gene. Lichen-associated fungal communities showed high diversity, with a total of 42,259 reads belonging to 370 operational taxonomic units (OTUs) being found. Of these OTUs, 294 belonged to Ascomycota, 54 to Basidiomycota, 2 to Zygomycota, and 20 to unknown fungi. Leotiomycetes, Dothideomycetes, and Eurotiomycetes were the major classes, whereas the dominant orders were Helotiales, Capnodiales, and Chaetothyriales. Interestingly, most fungal OTUs were closely related to fungi from various habitats (e.g., soil, rock, plant tissues) in the Arctic, Antarctic and alpine regions, which suggests that living in association with lichen thalli may be a transient stage of life cycle for these fungi and that long-distance dispersal may be important to the fungi in the Arctic. In addition, host-related factors shaped the lichen-associated fungal communities in this region. Taken together, these results suggest that lichens thalli act as reservoirs of diverse fungi from various niches, which may improve our understanding of fungal evolution and ecology in the Arctic. The Arctic is one of the most pristine regions of the planet, and its environment exhibits extreme condi- tions (e.g., low temperature, strong winds, permafrost, and long periods of darkness and light) and offers unique opportunities to explore extremophiles. -
Molecular Phylogenetic Study at the Generic Boundary Between the Lichen-Forming Fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae)
Mycol. Res. 107 (11): 1266–1276 (November 2003). f The British Mycological Society 1266 DOI: 10.1017/S0953756203008529 Printed in the United Kingdom. Molecular phylogenetic study at the generic boundary between the lichen-forming fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae) Ulrik SØCHTING1 and Franc¸ ois LUTZONI2 1 Department of Mycology, Botanical Institute, University of Copenhagen, O. Farimagsgade 2D, DK-1353 Copenhagen K, Denmark. 2 Department of Biology, Duke University, Durham, NC 27708-0338, USA. E-mail : [email protected] Received 5 December 2001; accepted 5 August 2003. A molecular phylogenetic analysis of rDNA was performed for seven Caloplaca, seven Xanthoria, one Fulgensia and five outgroup species. Phylogenetic hypotheses are constructed based on nuclear small and large subunit rDNA, separately and in combination. Three strongly supported major monophyletic groups were revealed within the Teloschistaceae. One group represents the Xanthoria fallax-group. The second group includes three subgroups: (1) X. parietina and X. elegans; (2) basal placodioid Caloplaca species followed by speciations leading to X. polycarpa and X. candelaria; and (3) a mixture of placodioid and endolithic Caloplaca species. The third main monophyletic group represents a heterogeneous assemblage of Caloplaca and Fulgensia species with a drastically different metabolite content. We report here that the two genera Caloplaca and Xanthoria, as well as the subgenus Gasparrinia, are all polyphyletic. The taxonomic significance of thallus morphology in Teloschistaceae and the current delimitation of the genus Xanthoria is discussed in light of these results. INTRODUCTION Taxonomy of Teloschistaceae and its genera The Teloschistaceae is a well-delimited family of Hawksworth & Eriksson (1986) assigned the Teloschis- lichenized fungi. -
A Metagenomic Approach to Reconstruct the Holo-Genome Of
bioRxiv preprint doi: https://doi.org/10.1101/810986; this version posted October 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. What is in a lichen? A metagenomic approach to reconstruct the holo-genome of Umbilicaria pustulata Bastian Greshake Tzovaras1,2,3, Francisca H.I.D. Segers1,4, Anne Bicker5, Francesco Dal Grande4,6, Jürgen Otte6, Seyed Yahya Anvar7, Thomas Hankeln5, Imke Schmitt4,6,8, and Ingo Ebersberger1,4,6,# 1Applied Bioinformatics Group, Institute of Cell Biology and Neuroscience, Goethe University Frankfurt, Max-von-Laue Str. 13, Frankfurt am Main, 60438, Germany 2Lawrence Berkeley National Laboratory, Berkeley, United States 3Center for Research & Interdisciplinarity, Université de Paris, France 4LOEWE Center for Translational Biodiversity Genomics, Frankfurt, Germany 5 Institute for Organismic and Molecular Evolution, Molecular Genetics and Genome Analysis, Johannes Gutenberg University Mainz, J. J. Becher-Weg 30A, 55128 Mainz, Germany 6Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Senckenberg Anlage 25, 60325 Frankfurt, Germany 7Department of Human Genetics, Leiden University Medical Center, Leiden 2300 RC, Netherlands 8Molecular Evolutionary Biology Group, Institute of Ecology, Diversity, and Evolution, Goethe University Frankfurt, Max-von-Laue Str. 13, Frankfurt am Main, 60438, Germany 1 bioRxiv preprint doi: https://doi.org/10.1101/810986; this version posted October 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. # Correspondence to: [email protected] Keywords: Metagenome-assembled genome, Sequencing error, Symbiosis, Chlorophyta, Mitochondria, Gene loss, organellar ploidy levels 2 bioRxiv preprint doi: https://doi.org/10.1101/810986; this version posted October 21, 2019. -
Xanthoria Parietina (L). TH. FR. MYCOBIONT ISOLATION BY
Muzeul Olteniei Craiova. Oltenia. Studii úi comunicări. ùtiinĠele Naturii. Tom. 29, No. 2/2013 ISSN 1454-6914 Xanthoria parietina (L). TH.FR. MYCOBIONT ISOLATION BY ASCOSPORE DISCHARGE, GERMINATION AND DEVELOPMENT IN “IN VITRO” CULTURE CRISTIAN Diana, BREZEANU Aurelia Abstract. The article is focused on fungal partner isolation from the Xanthoria parietina (Teloschistaceae) lichen body by ascospore discharge from golden disk-like fruits - ascoma, followed by germination and subsequent development on liquid nutrient medium Malt-Yeast extract (AHMADJIAN, 1967a) under different temperature and light/dark regime conditions. The morphology of the mycobiont and the inner structure were characterized by stereomicroscope Stemi 2000 C, light microscope Scope. A1, Zeiss and by the JEOL - JSM - 6610LV Scanning Electron Microscope. Keywords: mycobiont, ascospore isolation, lichen culture. Rezumat. Izolarea micobiontului de Xanthoria parietina (L.) TH.FR. prin descărcarea sporilor, germinarea úi dezvoltarea în cultură ,,in vitro”. Acest articol se axează pe izolarea partenerului fungal din talul de X. parietina (Teloschistaceae), prin eliberarea ascosporilor din apoteciile disciforme aurii, urmată de germinarea úi dezvoltarea pe mediu nutritiv lichid Malt-Yeast extract (AHMADJIAN, 1967a) la diferite temperaturi úi sub un regim diferit de lumină/întuneric. Morfologia micobiontului úi structura sa internă au fost caracterizate la stereomicroscop Stemi 2000 C, la microscopul optic Scope. A1, Zeiss úi la microscopul electronic scanning JEOL - JSM - 6610LV. Cuvinte cheie: micobiont, izolarea ascosporilor, cultura lichenică. INTRODUCTION Lichens are a product of symbiotic association of two unrelated organisms, a primary producer (photobiont) - cyanobacteria or algae - and a primary consumer, a type of fungi (mycobiont), forming a new biological entity, with no resemblance to its individual components, due to non-structural, biochemical changes and physiological essentials for morphological differentiation, interaction and stability of the association. -
BLS Bulletin 111 Winter 2012.Pdf
1 BRITISH LICHEN SOCIETY OFFICERS AND CONTACTS 2012 PRESIDENT B.P. Hilton, Beauregard, 5 Alscott Gardens, Alverdiscott, Barnstaple, Devon EX31 3QJ; e-mail [email protected] VICE-PRESIDENT J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SECRETARY C. Ellis, Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR; email [email protected] TREASURER J.F. Skinner, 28 Parkanaur Avenue, Southend-on-Sea, Essex SS1 3HY, email [email protected] ASSISTANT TREASURER AND MEMBERSHIP SECRETARY H. Döring, Mycology Section, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] REGIONAL TREASURER (Americas) J.W. Hinds, 254 Forest Avenue, Orono, Maine 04473-3202, USA; email [email protected]. CHAIR OF THE DATA COMMITTEE D.J. Hill, Yew Tree Cottage, Yew Tree Lane, Compton Martin, Bristol BS40 6JS, email [email protected] MAPPING RECORDER AND ARCHIVIST M.R.D. Seaward, Department of Archaeological, Geographical & Environmental Sciences, University of Bradford, West Yorkshire BD7 1DP, email [email protected] DATA MANAGER J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SENIOR EDITOR (LICHENOLOGIST) P.D. Crittenden, School of Life Science, The University, Nottingham NG7 2RD, email [email protected] BULLETIN EDITOR P.F. Cannon, CABI and Royal Botanic Gardens Kew; postal address Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] CHAIR OF CONSERVATION COMMITTEE & CONSERVATION OFFICER B.W. Edwards, DERC, Library Headquarters, Colliton Park, Dorchester, Dorset DT1 1XJ, email [email protected] CHAIR OF THE EDUCATION AND PROMOTION COMMITTEE: S. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Kenai National Wildlife Refuge Species List, Version 2018-07-24
Kenai National Wildlife Refuge Species List, version 2018-07-24 Kenai National Wildlife Refuge biology staff July 24, 2018 2 Cover image: map of 16,213 georeferenced occurrence records included in the checklist. Contents Contents 3 Introduction 5 Purpose............................................................ 5 About the list......................................................... 5 Acknowledgments....................................................... 5 Native species 7 Vertebrates .......................................................... 7 Invertebrates ......................................................... 55 Vascular Plants........................................................ 91 Bryophytes ..........................................................164 Other Plants .........................................................171 Chromista...........................................................171 Fungi .............................................................173 Protozoans ..........................................................186 Non-native species 187 Vertebrates ..........................................................187 Invertebrates .........................................................187 Vascular Plants........................................................190 Extirpated species 207 Vertebrates ..........................................................207 Vascular Plants........................................................207 Change log 211 References 213 Index 215 3 Introduction Purpose to avoid implying -
Rangifer Tarandus Platyrhynchus) Michał Hubert We˛Grzyn 1, Paulina Wietrzyk-Pełka 1, Agnieszka Galanty 2, Beata Cykowska-Marzencka 3 & Monica Alterskjær Sundset 4
RESEARCH ARTICLE Incomplete degradation of lichen usnic acid and atranorin in Svalbard reindeer (Rangifer tarandus platyrhynchus) Michał Hubert We˛grzyn 1, Paulina Wietrzyk-Pełka 1, Agnieszka Galanty 2, Beata Cykowska-Marzencka 3 & Monica Alterskjær Sundset 4 1 Prof. Z. Czeppe Department of Polar Research and Documentation, Institute of Botany, Jagiellonian University, Kraków, Poland; 2 Department of Pharmacognosy, Pharmaceutical Faculty, Medical College, Jagiellonian University, Kraków, Poland; 3 Laboratory of Bryology, W. Szafer Institute of Botany, Polish Academy of Sciences, Kraków, Poland; 4 Department of Arctic and Marine Biology, UiT—The Arctic University of Norway, Tromsø, Norway Abstract Keywords Lichen secondary metabolites; ruminant; Previous studies of Eurasian tundra reindeer (Rangifer tarandus tarandus) in faecal samples; Spitsbergen; Arctic Norway indicate that their rumen microbiota play a key role in degrading lichen secondary metabolites. We investigated the presence of usnic acid and atranorin Contact in faecal samples from Svalbard reindeer (R. tarandus platyrhynchus). Samples Michał Hubert We˛grzyn, Prof. were collected in Bolterdalen valley together with vegetation samples from the Z. Czeppe Department of Polar study site. The mesic tundra in this area was dominated by vascular plants (59% Research and Documentation, Institute of vegetation cover). Bryophytes (16%) and lichens (25%) were also present. of Botany, Jagiellonian University, Gronostajowa 3, 30-387 Kraków, Poland. Qualitative and quantitative analyses of usnic acid and atranorin in lichen and E-mail: [email protected] faeces samples were performed using high-performance liquid chromatogra- phy. Contents of atranorin averaged 12.49 ± 0.41 mg g–1 in the thalli of Stereo- Abbreviations caulon alpinum, while the average level of usnic acid was lowest in Cladonia mitis HPLC: high-performance liquid (12.75 ± 2.86 mg g–1) and highest in Flavocetraria cucullata (34.87 ± 0.47 mg g–1). -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Diversification and Species Delimitation of Lichenized Fungi in Selected Groups of the Family Parmeliaceae (Ascomycota)
Diversification and species delimitation of lichenized fungi in selected groups of the family Parmeliaceae (Ascomycota) Kristiina Mark Tartu 7.10.2016 Publications I Mark, K., Saag, L., Saag, A., Thell, A., & Randlane, T. (2012) Testing morphology-based delimitation of Vulpicida juniperinus and V. tubulosus (Parmeliaceae) using three molecular markers. The Lichenologist 44 (6): 752−772. II Saag, L., Mark, K., Saag, A., & Randlane, T. (2014) Species delimitation in the lichenized fungal genus Vulpicida (Parmeliaceae, Ascomycota) using gene concatenation and coalescent-based species tree approaches. American Journal of Botany 101 (12): 2169−2182. III Mark, K., Saag, L., Leavitt, S. D., Will-Wolf, S., Nelsen, M. P., Tõrra, T., Saag, A., Randlane, T., & Lumbsch, H. T. (2016) Evaluation of traditionally circumscribed species in the lichen-forming genus Usnea (Parmeliaceae, Ascomycota) using six-locus dataset. Organisms Diversity & Evolution 16 (3): 497–524. IV Mark, K., Randlane, T., Hur, J.-S., Thor, G., Obermayer, W. & Saag, A. Lichen chemistry is concordant with multilocus gene genealogy and reflects the species diversification in the genus Cetrelia (Parmeliaceae, Ascomycota). Manuscript submitted to The Lichenologist. V Mark, K., Cornejo, C., Keller, C., Flück, D., & Scheidegger, C. (2016) Barcoding lichen- forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation. Genome 59 (9): 685–704. Systematics • Provides units for biodiversity measurements and investigates evolutionary relationships •