博士論文(要約) Habitat Use and Behavior of Lates Japonicus In
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Capturing and Maintaining Genetic Diversity for the Establishment of a Long
Capturing and maintaining genetic diversity for the establishment of a long- term breeding program for barramundi (Lates calcarifer) aquaculture Shannon Loughnan Bachelor of Science with Honours A thesis submitted in fulfilment of the requirements for the Degree of Doctor of Philosophy School of Biological Sciences Faculty of Science and Engineering Flinders University October 2013 ISBN: 978-1-925982-92-3 Contents List of Tables 7 List of Figures 8 List of Appendices 10 Declaration 11 Acknowledgements 12 Statement of Authorship 14 Thesis summary 15 Summary of chapters 19 1 General Introduction 25 1.1 Genetic improvement programs 25 1.2 Barramundi (Lates calcarifer) 28 1.3 Thesis scope and objectives 32 2 Broodstock contribution after mass spawning and size grading in barramundi (Lates calcarifer, Bloch) 34 2.1 Abstract 35 2.2 Introduction 36 2.3 Materials and methods 40 2.3.1 Mass spawning of broodstock 40 2.3.2 Size grading and sampling 42 2.3.3 DNA extraction 43 2.3.4 Batch sampling to discriminate non-contributors from low frequency contributors 44 2.3.5 PCR amplification 45 2.3.6 Statistical analysis 46 2.4 Results 48 2.4.1 Broodstock contribution 48 2.4.2 The production of half and full-sibling families 50 2.4.3 Genetic diversity 51 2.5 Discussion 53 2.6 Conclusion 58 3 Genetic diversity and relatedness estimates for captive barramundi (Lates calcarifer) broodstock populations, informs efforts to form a base population for selective breeding 67 3.1 Abstract 68 3.2 Introduction 69 3.3 Materials and methods 72 3.3.1 Sampling, DNA extraction -
Lates Niloticus) Ecological Risk Screening Summary
U.S. Fish and Wildlife Service Nile Perch (Lates niloticus) Ecological Risk Screening Summary Web Version – September 2014 Photo: © Biopix: N Sloth 1 Native Range, and Status in the United States Native Range From Schofield (2011): “Much of central, western and eastern Africa: Nile River (below Murchison Falls), as well as the Congo, Niger, Volga, Senegal rivers and lakes Chad and Turkana (Greenwood 1966 [cited by Schofield (2011) but not accessed for this report]). Also present in the brackish Lake Mariot near Alexandria, Egypt.” Lates niloticus Ecological Risk Screening Summary U.S. Fish and Wildlife Service – Web Version - 8/14/2012 Status in the United States From Schofield (2011): “Scientists from Texas traveled to Tanzania in 1974-1975 to investigate the introduction potential of Lates spp. into Texas reservoirs (Thompson et al. 1977 [cited by Schofield (2011) but not accessed for this report]). Temperature tolerance and trophic dynamics were studied for three species (L. angustifrons, L. microlepis and L. mariae). Subsequently, several individuals of these three species were shipped to Heart of the Hills Research Station (HOHRS) in Ingram, Texas in 1975 (Rutledge and Lyons 1976 [cited by Schofield (2011) but not accessed for this report]). Also in 1975, Nile perch (L. niloticus) were transferred from Lake Turkana, Kenya, to HOHRS. All fishes were held in indoor, closed-circulating systems (Rutledge and Lyons 1976).” “From 1978 to 1985, Lates spp. was released into various Texas reservoirs (Howells and Garrett 1992 [cited by Schofield (2011) but not accessed for this report]). Almost 70,000 Lates spp. larvae were stocked into Victor Braunig (Bexar Co.), Coleto Creek (Goliad Co.) and Fairfield (Freestone Co.) reservoirs between 1978 and 1984. -
Monophyly and Interrelationships of Snook and Barramundi (Centropomidae Sensu Greenwood) and five New Markers for fish Phylogenetics ⇑ Chenhong Li A, , Betancur-R
Molecular Phylogenetics and Evolution 60 (2011) 463–471 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Monophyly and interrelationships of Snook and Barramundi (Centropomidae sensu Greenwood) and five new markers for fish phylogenetics ⇑ Chenhong Li a, , Betancur-R. Ricardo b, Wm. Leo Smith c, Guillermo Ortí b a School of Biological Sciences, University of Nebraska, Lincoln, NE 68588-0118, USA b Department of Biological Sciences, The George Washington University, Washington, DC 200052, USA c The Field Museum, Department of Zoology, Fishes, 1400 South Lake Shore Drive, Chicago, IL 60605, USA article info abstract Article history: Centropomidae as defined by Greenwood (1976) is composed of three genera: Centropomus, Lates, and Received 24 January 2011 Psammoperca. But composition and monophyly of this family have been challenged in subsequent Revised 3 May 2011 morphological studies. In some classifications, Ambassis, Siniperca and Glaucosoma were added to the Accepted 5 May 2011 Centropomidae. In other studies, Lates + Psammoperca were excluded, restricting the family to Available online 12 May 2011 Centropomus. Recent analyses of DNA sequences did not solve the controversy, mainly due to limited taxonomic or character sampling. The present study is based on DNA sequence data from thirteen Keywords: genes (one mitochondrial and twelve nuclear markers) for 57 taxa, representative of all relevant Centropomidae species. Five of the nuclear markers are new for fish phylogenetic studies. The monophyly of Centrop- Lates Psammoperca omidae sensu Greenwood was supported by both maximum likelihood and Bayesian analyses of a Ambassidae concatenated data set (12,888 bp aligned). No support was found for previous morphological hypothe- Niphon spinosus ses suggesting that ambassids are closely allied to the Centropomidae. -
Description of Two New Species of Sea Bass (Teleostei: Latidae: Lates) from Myanmar and Sri Lanka
Zootaxa 3314: 1–16 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (online edition) Description of two new species of sea bass (Teleostei: Latidae: Lates) from Myanmar and Sri Lanka ROHAN PETHIYAGODA1 & ANTHONY C. GILL1,2 1Australian Museum, 6 College Street, Sydney NSW 2010, Australia. E-mail: [email protected] 2Macleay Museum and School of Biological Sciences, Macleay Building A12, University of Sydney, Sydney NSW 2006, Australia. E-mail: [email protected] Abstract Two new species of Lates Cuvier are described. Lates lakdiva, new species, from western Sri Lanka, differs from its Indo- Pacific congeners by its lesser body depth, 26.6‒27.6% SL; 5 rows of scales in transverse line between base of third dorsal- fin spine and lateral line; 31‒34 serrae on the posterior edge of the preoperculum; third anal-fin spine longer than second; 47‒52 lateral-line scales on body; and greatest depth of maxilla less than eye diameter. Lates uwisara, new species, from eastern Myanmar, is distinguished by possessing 7 scales in transverse line between base of third dorsal-fin spine and lat- eral line; eye diameter 4.4‒4.7% SL; body depth 28.4‒34.5% SL; and third anal-fin spine shorter than the second. Despite substantial genetic variation, L. calcarifer sensu lato is widely distributed, from tropical Australia through Indonesia, Sin- gapore and Thailand, westwards to at least the west coast of India. Caution is urged in translocating Lates in the Indo- Pacific region as other yet unrecognized species likely exist. -
B Chromosomes of the Asian Seabass (Lates Calcarifer) Contribute to Genome Variations at the Level of Individuals and Populations
G C A T T A C G G C A T genes Article B Chromosomes of the Asian Seabass (Lates calcarifer) Contribute to Genome Variations at the Level of Individuals and Populations Aleksey Komissarov 1,*, Shubha Vij 2,3, Andrey Yurchenko 1,4, Vladimir Trifonov 5,6 , Natascha Thevasagayam 2, Jolly Saju 2, Prakki Sai Rama Sridatta 2, Kathiresan Purushothaman 2,7, Alexander Graphodatsky 5,6 ,László Orbán 2,8,9,* and Inna Kuznetsova 2,* 1 Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg 199004, Russia; [email protected] 2 Reproductive Genomics Group, Temasek Life Sciences Laboratory, Singapore 117604, Singapore; [email protected] (S.V.); [email protected] (N.T.); [email protected] (J.S.); [email protected] (P.S.R.S.); [email protected] (K.P.) 3 School of Applied Science, Republic Polytechnic 9 Woodlands Avenue 9, Singapore 738964, Singapore 4 Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK 5 Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia; [email protected] (V.T.); [email protected] (A.G.) 6 Department of Natural Science, Novosibirsk State University, Novosibirsk 630090, Russia 7 Faculty of Biosciences and Aquaculture, Nord University, 8049 Bodø, Norway 8 Department of Animal Sciences, Georgikon Faculty, University of Pannonia, H-8360 Keszthely, Hungary 9 Center for Comparative Genomics, Murdoch University, 6150 Murdoch, Australia * Correspondence: [email protected] (A.K.); [email protected] (L.O.); [email protected] (I.K.) Received: 4 August 2018; Accepted: 12 September 2018; Published: 20 September 2018 Abstract: The Asian seabass (Lates calcarifer) is a bony fish from the Latidae family, which is widely distributed in the tropical Indo-West Pacific region. -
Diversity and Risk Patterns of Freshwater Megafauna: a Global Perspective
Diversity and risk patterns of freshwater megafauna: A global perspective Inaugural-Dissertation to obtain the academic degree Doctor of Philosophy (Ph.D.) in River Science Submitted to the Department of Biology, Chemistry and Pharmacy of Freie Universität Berlin By FENGZHI HE 2019 This thesis work was conducted between October 2015 and April 2019, under the supervision of Dr. Sonja C. Jähnig (Leibniz-Institute of Freshwater Ecology and Inland Fisheries), Jun.-Prof. Dr. Christiane Zarfl (Eberhard Karls Universität Tübingen), Dr. Alex Henshaw (Queen Mary University of London) and Prof. Dr. Klement Tockner (Freie Universität Berlin and Leibniz-Institute of Freshwater Ecology and Inland Fisheries). The work was carried out at Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Germany, Freie Universität Berlin, Germany and Queen Mary University of London, UK. 1st Reviewer: Dr. Sonja C. Jähnig 2nd Reviewer: Prof. Dr. Klement Tockner Date of defense: 27.06. 2019 The SMART Joint Doctorate Programme Research for this thesis was conducted with the support of the Erasmus Mundus Programme, within the framework of the Erasmus Mundus Joint Doctorate (EMJD) SMART (Science for MAnagement of Rivers and their Tidal systems). EMJDs aim to foster cooperation between higher education institutions and academic staff in Europe and third countries with a view to creating centres of excellence and providing a highly skilled 21st century workforce enabled to lead social, cultural and economic developments. All EMJDs involve mandatory mobility between the universities in the consortia and lead to the award of recognised joint, double or multiple degrees. The SMART programme represents a collaboration among the University of Trento, Queen Mary University of London and Freie Universität Berlin. -
Assessment of the Status of Lates Stappersii (Centropomidae) Stock in Lift-Net Fishery in Lake Tanganyika, Kigoma, Tanzania
ASSESSMENT OF THE STATUS OF LATES STAPPERSII (CENTROPOMIDAE) STOCK IN LIFT-NET FISHERY IN LAKE TANGANYIKA, KIGOMA, TANZANIA 1IA Kimirei and 2YD Mgaya 1Tanzania Fisheries Research Institute, Box 90, Kigoma Tanzania. [email protected] 2Faculty of Aquatic Sciences and Technology, University of Dar es Salaam, P.O. Box 60091, Dar es Salaam, Tanzania. [email protected] (Corresponding author) ABSTRACT An assessment of the status of Lates stappersii (Boulenger, 1914) stock in the lift-net fishery in Lake Tanganyika, Kigoma area, was carried out from January to December 2003. Results indicated that breeding is seasonal with peaks in February, July-August and December, and so was catch composition, with peaks in March, May and July–August that followed the abundance of its prey, Stolothrissa tanganicae. Catch per unit effort was similar between wet and dry seasons and peaked synchronously at all study sites probably as an indication of its abundance during those months; but also it could mean that the fishes were caught from the same general area. The unselective nature of the lift-net, a common fishing gear in the lake, could be exerting pressure on the pelagic resource, that leads to local over-fishing if not controlled. There is need to institute minimum fish size and mesh size limits and licensing, on a lake-wide basis, as fisheries management measures to safeguard against overexploitation of this highly variable and mobile yet important pelagic fish resource. INTRODUCTION stappersii is now important in the southern There are four endemic Lates species to Lake sector of the lake (Zambia) (Coenen et al. -
Freshwater Fishes of the Burdekin Dry Tropics Acknowledgements
Freshwater Fishes of the Burdekin Dry Tropics Acknowledgements Much of the information about fish species and their distribution in the Burdekin Dry Tropics NRM region is based on the work of Dr Brad Pusey (Griffith University). The Australian Centre for Tropical Freshwater Research (ACTFR) provided access to their Northern Australian Fish (NAF) database which contains the most current fish survey data for tropical Australia. Dr Allan Webb (ACTFR) provided information on the exotic fish species recorded from the immediate Townsville region. Thanks to Alf Hogan from Fisheries Queensland for providing data on species distribution. Thanks also to Bernard Yau and efishalbum for their image of the Threadfin Silver Biddy. Published by NQ Dry Tropics Ltd trading as NQ Dry Tropics. Copyright 2010 NQ Dry Tropics Ltd ISBN 978-921584-21-3 The Copyright Act 1968 permits fair dealing for study research, news reporting, criticism, or review. Selected passages, tables or diagrams may be reproduced for such purposes provided acknowledgement of the source is included. Major extracts of the entire document may not be reproduced by any process without the written permission of the Chief Executive Officer, NQ Dry Tropics. Please reference as: Carter, J & Tait, J 2010, Freshwater Fishes of the Burdekin Dry Tropics, Townsville. Further copies may be obtained from NQ Dry Tropics or from our Website: www.nqdrytropics.com.au Cnr McIlwraith and Dean St P.O Box 1466, Townsville Q 4810 Ph: (07) 4724 3544 Fax: (07) 4724 3577 Important Disclaimer: The information contained in this report has been compiled in good faith from sources NQ Dry Tropics Limited trading as NQ Dry Tropics believes to be reliable. -
Biodiversity in Sub-Saharan Africa and Its Islands Conservation, Management and Sustainable Use
Biodiversity in Sub-Saharan Africa and its Islands Conservation, Management and Sustainable Use Occasional Papers of the IUCN Species Survival Commission No. 6 IUCN - The World Conservation Union IUCN Species Survival Commission Role of the SSC The Species Survival Commission (SSC) is IUCN's primary source of the 4. To provide advice, information, and expertise to the Secretariat of the scientific and technical information required for the maintenance of biologi- Convention on International Trade in Endangered Species of Wild Fauna cal diversity through the conservation of endangered and vulnerable species and Flora (CITES) and other international agreements affecting conser- of fauna and flora, whilst recommending and promoting measures for their vation of species or biological diversity. conservation, and for the management of other species of conservation con- cern. Its objective is to mobilize action to prevent the extinction of species, 5. To carry out specific tasks on behalf of the Union, including: sub-species and discrete populations of fauna and flora, thereby not only maintaining biological diversity but improving the status of endangered and • coordination of a programme of activities for the conservation of bio- vulnerable species. logical diversity within the framework of the IUCN Conservation Programme. Objectives of the SSC • promotion of the maintenance of biological diversity by monitoring 1. To participate in the further development, promotion and implementation the status of species and populations of conservation concern. of the World Conservation Strategy; to advise on the development of IUCN's Conservation Programme; to support the implementation of the • development and review of conservation action plans and priorities Programme' and to assist in the development, screening, and monitoring for species and their populations. -
The Fish Fauna of Lake Victoria During a Century of Human Induced Perturbations
The Fish Fauna of Lake Victoria during a Century of Human Induced Perturbations Frans Witte1,2, Mary A. Kishe-Machumu1,3, Olivia C. Mkumbo4, Jan H. Wanink1,5, Pleun C. Goudswaard1,6, Jacco C. Van Rijssel1,2,7, Martien J.P. van Oijen2 ABSTRACT WITTE, F., KISHE-MACHUMU, M. A., MKUMBO, O. C., WANINK, J. H., GOUDSWAARD, P. C., VAN RIJSSEL, J.C. & VAN OIJEN, M. J.P. The fish fauna of Lake Victoria during a century of human induced perturbations. In J. Snoeks & A. Getahun (eds), Pro- ceedings of the Fourth International Conference on African Fish and Fisheries, Addis Ababa, Ethiopia, 22-26 September 2008. Tervuren: Royal Museum for Central Africa, ‘Zoological Documentation Online Series’, pp. 49-66. Lake Victoria, by area the largest tropical lake of the world, is well-known for its diverse native fish fauna, which com- prised about 500 endemic haplochromine cichlid species, two tilapiine species and 46 other species belonging to 12 fami- lies. During the past decades, the fish species diversity in the lake has declined dramatically due to human induced per- turbations in the ecosystem. Based on literature and our own research findings we provide an overview of these changes and their most likely causes. During the first half of the last century, the increasing fishing pressure had a great impact on the native tilapiine cichlids and other large fish species. The shift in fish landings showed a classic example of fishing down the food web. Because of the dwindling catches, the Nile perch and four exotic tilapiine cichlids were introduced into the lake in the 1950s. -
NILE PERCH Biodiversity As a Spinoff of Btb Control Will Then Be Lost
of problem organisms is refl ected in the effort of commu- Atkinson, I. A. E., and E. K. Cameron. 1993. Human infl uence on the nity groups working on private and public lands to remove terrestrial biota and biotic communities of New Zealand. Trends in Ecology and Evolution 12: 447–451. pests and weeds and to restore and replant native species. Fukami, T., D. A. Wardle, P. J. Bellingham, C. P. H. Mulder, D. R. Towns, However, this more aggressive stand toward invasive spe- G. W. Yeates, K. I. Bonner, M. S. Durrett, M. N. Grant-Hoffman, cies, especially mammals, can lead to polarized attitudes and W. M. Williamson. 2006. Above- and below-ground impacts of introduced predators in seabird-dominated island ecosystems. Ecology within local communities. For example, the control of Letters 9: 1299–1307. possums and associated by-kill of deer spawned a coor- Hosking, G., J. Clearwater, J. Handisides, M. Kay, J. Ray, and N. Simmons. dinated campaign against compound 1080 and the agen- 2003. Tussock moth eradication: A success story from New Zealand. International Journal of Pest Management 49: 17–24. cies that use it; this has even included threats to sabotage King, C. M., ed. 2005. The Handbook of New Zealand Mammals, 2nd ed. conservation sites through the deliberate release of pests. Melbourne: Oxford University Press. Furthermore, within Auckland, attitudes to the spread of McDowall, R. M. 1994. Gamekeepers for the Nation: The Story of Btk against introduced moths differed between suburbs, New Zealand’s Acclimatisation Societies, 1861–1990. Christchurch: Canterbury University Press. with orchestrated campaigns of resistance to its use in west- Montague, T. -
Evolution and Ecology in Widespread Acoustic Signaling Behavior Across Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.14.296335; this version posted September 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Evolution and Ecology in Widespread Acoustic Signaling Behavior Across Fishes 2 Aaron N. Rice1*, Stacy C. Farina2, Andrea J. Makowski3, Ingrid M. Kaatz4, Philip S. Lobel5, 3 William E. Bemis6, Andrew H. Bass3* 4 5 1. Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, 159 6 Sapsucker Woods Road, Ithaca, NY, USA 7 2. Department of Biology, Howard University, 415 College St NW, Washington, DC, USA 8 3. Department of Neurobiology and Behavior, Cornell University, 215 Tower Road, Ithaca, NY 9 USA 10 4. Stamford, CT, USA 11 5. Department of Biology, Boston University, 5 Cummington Street, Boston, MA, USA 12 6. Department of Ecology and Evolutionary Biology and Cornell University Museum of 13 Vertebrates, Cornell University, 215 Tower Road, Ithaca, NY, USA 14 15 ORCID Numbers: 16 ANR: 0000-0002-8598-9705 17 SCF: 0000-0003-2479-1268 18 WEB: 0000-0002-5669-2793 19 AHB: 0000-0002-0182-6715 20 21 *Authors for Correspondence 22 ANR: [email protected]; AHB: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.09.14.296335; this version posted September 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.