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Large Trees, Supertrees and the Grass Phylogeny
LARGE TREES, SUPERTREES AND THE GRASS PHYLOGENY Thesis submitted to the University of Dublin, Trinity College for the Degree of Doctor of Philosophy (Ph.D.) by Nicolas Salamin Department of Botany University of Dublin, Trinity College 2002 Research conducted under the supervision of Dr. Trevor R. Hodkinson Department of Botany, University of Dublin, Trinity College Dr. Vincent Savolainen Jodrell Laboratory, Molecular Systematics Section, Royal Botanic Gardens, Kew, London DECLARATION I thereby certify that this thesis has not been submitted as an exercise for a degree at any other University. This thesis contains research based on my own work, except where otherwise stated. I grant full permission to the Library of Trinity College to lend or copy this thesis upon request. SIGNED: ACKNOWLEDGMENTS I wish to thank Trevor Hodkinson and Vincent Savolainen for all the encouragement they gave me during the last three years. They provided very useful advice on scientific papers, presentation lectures and all aspects of the supervision of this thesis. It has been a great experience to work in Ireland, and I am especially grateful to Trevor for the warm welcome and all the help he gave me, at work or outside work, since the beginning of this Ph.D. in the Botany Department. I will always remember his patience and kindness to me at this time. I am also grateful to Vincent for his help and warm welcome during the different periods of time I stayed in London, but especially for all he did for me since my B.Sc. at the University of Lausanne. I wish also to thank Prof. -
Karyomorphology and Karyotype Asymmetry in the South American Caesalpinia Species (Leguminosae and Caesalpinioideae)
Karyomorphology and karyotype asymmetry in the South American Caesalpinia species (Leguminosae and Caesalpinioideae) P.S. Rodrigues, M.M. Souza and R.X. Corrêa Centro de Biotecnologia e Genética, Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Ilhéus, BA, Brasil Corresponding author: R.X. Corrêa E-mail: [email protected] Genet. Mol. Res. 13 (4): 8278-8293 (2014) Received May 7, 2013 Accepted June 10, 2014 Published October 20, 2014 DOI http://dx.doi.org/10.4238/2014.October.20.4 ABSTRACT. With the purpose of addressing the pattern of karyotype evolution in Caesalpinia species, chromosome morphology was characterized in five species from Brazil, and karyotypic asymmetry was analyzed in 14 species from South America. All accessions had the chromosome number 2n = 24, which was first described here for Caesalpinia laxiflora Tul. and Cenostigma macrophyllum Tul. The karyotype formula of C. laxiflora, Caesalpinia pyramidalis Tul., and C. macrophyllum was 12 m. The formula varies amongst the populations of Caesalpinia bracteosa Tul. (11 m + 1 sm) and Caesalpinia echinata Lam. (10 m + 2 sm and 9 m + 3 sm). The intra- and interspecific variations in chromosome length were significant (analysis of variance, P < 0.05). Analyzing the asymmetry index (AI), revealed that Caesalpinia calycina Benth. had the most asymmetrical karyotype (AI = 10.52), whereas Caesalpinia paraguarienses (D. Parodi) Burkat. and Caesalpinia gilliesii (Hook.) Benth. had the most symmetrical karyotypes (AI = 0.91 and 1.10, respectively). There has been a trend to lower AI values for the Caesalpinia s.l. species assigned in Libidibia and intermediate values for those combined into Poincianella. -
A Synopsis of Coulteria (Leguminosae), Including New Names and Synonyms
Phytotaxa 291 (1): 033–042 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2017 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.291.1.3 A synopsis of Coulteria (Leguminosae), including new names and synonyms SOLANGE SOTUYO1, JOSÉ LUIS CONTRERAS2, EDELINE GAGNON3 & GWILYM P. LEWIS4 [email protected] Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México. 2Facultad de Arquitectura, Benemérita Universidad Autónoma de Puebla. 4 Sur 104. Col. Centro. CP 72000. Puebla, Puebla. 3Institut de Recherche en Biologie Végétale, Département de Sciences biologiques, Université de Montréal, 4101 rue Sherbrooke est, Montréal, Québec, Canada, H1X 2B2 4Comparative Plant and Fungal Biology Department, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, U.K. Abstract As a result of ongoing studies in Caesalpinia sensu lato, new combinations and synonyms are proposed in the reinstated segregate genus Coulteria. Key words: Brasilettia, Guaymasia, Caesalpinia, Caesalpinieae, Coulteria, Fabaceae, nomenclature Introduction Prior to morphological (Lewis and Schrire, 1995; Nores et al., 2012) and molecular (Simpson et al., 2003; Nores et al., 2012; Gagnon et al., 2013; Gagnon et al., 2016) phylogenetic studies, Caesalpinia sensu lato included 25 genus names in synonymy and comprised c. 150 species, mostly in the Palaeo- and Neotropics (Lewis, 1998). Gagnon et al. (2013) confirmed that all the species placed in Caesalpinia in its broadest circumscription are not a monophyletic group and should be recognised in several distinct genera. New combinations have been proposed for the majority of species occurring in México, USA, Central and South America (Gagnon et al., 2016) to reflect the latest phylogenetic data, but some are still needed in a few genera where species delimitations remain unclear. -
Asteraceae) Are Descendants of a Paleohexaploid and All Share A
bioRxiv preprint doi: https://doi.org/10.1101/043455; this version posted May 6, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae 2,6 2 2 2 3 Michael S. Barker , Zheng Li , Thomas I. Kidder , Chris R. Reardon , Zhao Lai , Luiz O. 4 5 3,5 Oliveira , Moira Scascitelli , and Loren H. Rieseberg 2 Department of Ecology & Evolutionary Biology, University of Arizona, Tucson, AZ 85721 USA 3 Department of Biology and Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 USA 4 Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, Brazil 5 Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada 6 Corresponding author: [email protected] Running title: Nested paleopolyploidies in the Compositae and Calyceraceae 1 Manuscript received _______; revision accepted ________. “The authors thank Tao Shi for assistance with a preliminary analysis of these data, and Tara Hall for assistance with submitting sequences to GenBank. We also thank Quentin Cronk of UBC for the Barnadesia sample and Cindy Sayre of VanDusen Botanical Garden for providing access to Nymphoides material. We also thank two anonymous reviewers for bioRxiv preprint doi: https://doi.org/10.1101/043455; this version posted May 6, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
How Does Genome Size Affect the Evolution of Pollen Tube Growth Rate, a Haploid Performance Trait?
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2019 How does genome size affect the evolution of pollen tube growth rate, a haploid performance trait? John Reese University of Tennessee Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Recommended Citation Reese, John, "How does genome size affect the evolution of pollen tube growth rate, a haploid performance trait?. " Master's Thesis, University of Tennessee, 2019. https://trace.tennessee.edu/utk_gradthes/5659 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by John Reese entitled "How does genome size affect the evolution of pollen tube growth rate, a haploid performance trait?." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Master of Science, with a major in Ecology and Evolutionary Biology. Joseph Williams Jr., Major Professor We have read this thesis and recommend its acceptance: Brian O'Meara, Randall Small, Andreas Nebenführ Accepted for the Council: Dixie L. Thompson Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) How does genome size affect the evolution of pollen tube growth rate, a haploid performance trait? A Thesis Presented for the Master of Science Degree The University of Tennessee, Knoxville John Brandon Reese August 2019 ACKNOWLEDGEMENTS I would like to thank my advisor, Joe Williams, for giving me guidance and allowing me to develop my own research interests. -
TARA (Caesalpinia Spinosa)
ADVERTIMENT. L'accés als continguts d'aquesta tesi doctoral i la seva utilització ha de respectar els drets de la persona autora. Pot ser utilitzada per a consulta o estudi personal, així com en activitats o materials d'investigació i docència en els termes establerts a l'art. 32 del Text Refós de la Llei de Propietat Intel·lectual (RDL 1/1996). Per altres utilitzacions es requereix l'autorització prèvia i expressa de la persona autora. En qualsevol cas, en la utilització dels seus continguts caldrà indicar de forma clara el nom i cognoms de la persona autora i el títol de la tesi doctoral. No s'autoritza la seva reproducció o altres formes d'explotació efectuades amb finalitats de lucre ni la seva comunicació pública des d'un lloc aliè al servei TDX. Tampoc s'autoritza la presentació del seu contingut en una finestra o marc aliè a TDX (framing). Aquesta reserva de drets afecta tant als continguts de la tesi com als seus resums i índexs. ADVERTENCIA. El acceso a los contenidos de esta tesis doctoral y su utilización debe respetar los derechos de la persona autora. Puede ser utilizada para consulta o estudio personal, así como en actividades o materiales de investigación y docencia en los términos establecidos en el art. 32 del Texto Refundido de la Ley de Propiedad Intelectual (RDL 1/1996). Para otros usos se requiere la autorización previa y expresa de la persona autora. En cualquier caso, en la utilización de sus contenidos se deberá indicar de forma clara el nombre y apellidos de la persona autora y el título de la tesis doctoral. -
Diversity of Useful Mexican Legumes: Analyses of Herbarium Specimen Records
diversity Article Diversity of Useful Mexican Legumes: Analyses of Herbarium Specimen Records Alfonso Delgado-Salinas 1,* , Leticia Torres-Colín 1 , Mario Luna-Cavazos 2 and Robert Bye 3 1 Departamento de Botánica, Instituto de Biología, UNAM, Av. Universidad 3000, Cd. Universitaria, Coyoacán, Ciudad de Mexico 04510, Mexico; [email protected] 2 Postgrado en Botánica, Colegio de Postgraduados, Campus Montecillo, Carretera Mexico Texcoco Km 35.5, Montecillo, Texcoco 56230, Mexico; [email protected] 3 Laboratorio de Etnobotánica, Jardín Botánico, Instituto de Biología, UNAM, Av. Universidad 3000, Cd. Universitaria, Coyoacán, Ciudad de Mexico 04510, Mexico; [email protected] * Correspondence: [email protected] Abstract: Herbarium specimens of wild Mexican Leguminosae with ethnobotanical information are an important resource for understanding human–legume interactions. The 525 useful legume species registered in Mexico’s National Herbarium (MEXU) were analyzed using a hierarchical method and represented in dendrograms. Of these, 244 species noted a single use, while 281 species reported two or more uses. Plants applied for medicinal purposes registered the greatest number of species (351 spp.), followed by those employed as animal food (205 spp.), material sources (197 spp.), environmental modifiers (139 spp.), and food and food additives (119 spp.). This study also suggests that a greater number of uses is concentrated in closely related species-rich taxa rather than in less diverse groups, and that certain uses are clustered in phylogenetically related groups. Of particular Citation: Delgado-Salinas, A.; interest are multipurpose shrubs and trees managed as living fences that satisfy a variety of needs Torres-Colín, L.; Luna-Cavazos, M.; in rural areas. -
Plant Systematics Laboratory Manual
i Plant Systematics Laboratory Manual Dr. Michael G. Simpson San Diego State University Copyright © 2013 by Michael G. Simpson ii iii Plant Systematics Lab Manual Table of Contents Syllabus Plant Systematics: Biology 530 iv–vii Laboratory 1 Plant Systematics: An Overview 1 Laboratory 2 Phylogenetic Systematics 7 Laboratory 3 Evolution and Diversity of Green and Land Plants 19 Laboratory 4 Evolution and Diversity of Vascular Plants 21 Laboratory 5 Evolution and Diversity of Woody and Seed Plants 25 Laboratory 6 Evolution of Flowering Plants 29 Laboratory 7 Diversity and Classification of Flowering Plants: Amborellales-Monocots 31 Laboratory 8 Diversity and Classification of Flowering Plants: Eudicots 62 Laboratory 9 Plant Morphology 91 Laboratory 10 Plant Anatomy and Physiology 119 Laboratory 11 Plant Embryology 125 Laboratory 12 Palynology 127 Laboratory 13 Plant Reproductive Biology 129 Laboratory 14 Plant Molecular Systematics 133 Laboratory 15 Plant Identification 135 Laboratory 16 Plant Nomenclature 139 Laboratory 17 Plant Collecting and Documentation 143 Laboratory 18 Herbaria and Database Systems 157 Appendix 1 Plant Description 163 Appendix 2 Plant Morphology Review 167 Appendix 3 SDSU Plants 179 Laboratory 1 Plant Systematics: An Overview 1 Plant Systematics Laboratory #1 PLANT SYSTEMATICS: AN OVERVIEW OBJECTIVES FOR THIS LABORATORY: 1. Review the major groups of plants. 2. Review the major concepts and terms of phylogenetic systematics. 3. Understand the basics of taxonomy by performing exercises in its components. pLAnT SYSTEMATICS What is a plant? Observe and label the examples of each of the major plant groups on display: liverworts, hornworts, mosses, lycophytes, psilophytes, equisetophytes, ferns, conifers, cycads, Ginkgo, Gnetales, and angiosperms (monocots and eudicots). -
Dimensional and Structural Stability of Leather Under Alternating Climate
Vol:63 N2 2012 Caesalpinia spinosa (tara): the sustainable source of tannins Juan-Carlos Castell1, Cristina Fabregat1, Silvia Sorolla1, Montserrat Jorba1, Anna Bacartit2, Lluís Ollé2. 1 AIICA, Asociación de Investigación de la Industria de Curtidos y Anexas, Pla de la Massa s/n, Igualada, Spain, Phone: 34-93 805 35388, Fax: 34-93 805 0618, e-mail: [email protected] 2 ENGIBIO Research Group. Igualada School of Engineering (EEI). Universitat Politècnica de Catalunya (UPC). Plaça del Rei, 15. 08700 Igualada, Spain. Abstract The fruit of the tara tree is evaluated as a sustainable source of tannins and other by-products for the leather industry and other applications in food, pharmaceutical or cosmetics. Taxonomy and growing conditions in nature or in agroforestry farms are described, as well as industrial processes among the value chain from harvesting to international markets. Finally, commercial opportunities for economic exploitation are presented. Background Cæsalpinia spinosa (Molina) Kuntze, commonly known as tara1, is a small leguminous tree or thorny shrub. Tara is recognized as a source of high value products from its pods and seeds as tannins based on a galloylated quinic acid structure, used in the leather industry, and gum for food industry. It is also grown as an ornamental plant because of its large colorful flowers and pods. Photo 1: Caesalpinia spinosa. Tree, flowers and pods. Having its origin in the Andean Region, pre-Incas civilizations used the fruits of the tree to produce dyes for textiles and ceramics, tannins for leather and medicines. Known, therefore, as “Incas green gold”, there is a strategic interest in Peru, Bolivia and Ecuador, supported by international organizations for cooperation, to promote productive processes under environmental sustainability criteria and social benefit. -
Floral Development and Systematics of the Caesalpinieae (Leguminosae: Caesalpinioideae)
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1996 Floral Development and Systematics of the Caesalpinieae (Leguminosae: Caesalpinioideae). Katherine Ellen Kantz Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Kantz, Katherine Ellen, "Floral Development and Systematics of the Caesalpinieae (Leguminosae: Caesalpinioideae)." (1996). LSU Historical Dissertations and Theses. 6257. https://digitalcommons.lsu.edu/gradschool_disstheses/6257 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter free, while others may be from any type of computer printer. The quality of this reproduction Is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely afreet reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps.