Upregulation of ALDH1B1 Promotes Tumor Progression in Osteosarcoma
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Identify Distinct Prognostic Impact of ALDH1 Family Members by TCGA Database in Acute Myeloid Leukemia
Open Access Annals of Hematology & Oncology Research Article Identify Distinct Prognostic Impact of ALDH1 Family Members by TCGA Database in Acute Myeloid Leukemia Yi H, Deng R, Fan F, Sun H, He G, Lai S and Su Y* Department of Hematology, General Hospital of Chengdu Abstract Military Region, China Background: Acute myeloid leukemia is a heterogeneous disease. Identify *Corresponding author: Su Y, Department of the prognostic biomarker is important to guide stratification and therapeutic Hematology, General Hospital of Chengdu Military strategies. Region, Chengdu, 610083, China Method: We detected the expression level and the prognostic impact of Received: November 25, 2017; Accepted: January 18, each ALDH1 family members in AML by The Cancer Genome Atlas (TCGA) 2018; Published: February 06, 2018 database. Results: Upon 168 patients whose expression level of ALDH1 family members were available. We found that the level of ALDH1A1correlated to the prognosis of AML by the National Comprehensive Cancer Network (NCCN) stratification but not in other ALDH1 members. Moreover, we got survival data from 160 AML patients in TCGA database. We found that high ALDH1A1 expression correlated to poor Overall Survival (OS), mostly in Fms-like Tyrosine Kinase-3 (FLT3) mutated group. HighALDH1A2 expression significantly correlated to poor OS in FLT3 wild type population but not in FLT3 mutated group. High ALDH1A3 expression significantly correlated to poor OS in FLT3 mutated group but not in FLT3 wild type group. There was no relationship between the OS of AML with the level of ALDH1B1, ALDH1L1 and ALDH1L2. Conclusion: The prognostic impacts were different in each ALDH1 family members, which needs further investigation. -
Transcriptional Silencing of ALDH2 in Acute Myeloid Leukemia Confers a Dependency
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.23.352070; this version posted October 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Transcriptional silencing of ALDH2 in acute myeloid leukemia confers a dependency on Fanconi anemia proteins Zhaolin Yang1, Yiliang Wei1, Xiaoli S. Wu1,2, Shruti V. Iyer1,2, Moonjung Jung3, Emmalee R. Adelman4, Olaf Klingbeil1, Melissa Kramer1, Osama E. Demerdash1, Kenneth Chang1, Sara Goodwin1, Emily Hodges5, W. Richard McCombie1, Maria E. Figueroa4, Agata Smogorzewska3, and Christopher R. Vakoc1,6* 1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA 2Genetics Program, Stony Brook University, Stony Brook, New York 11794, USA 3Laboratory of Genome Maintenance, The Rockefeller University, New York 10065, USA 4Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL 33136, USA 5Department of Biochemistry and Vanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, TN 37232, USA 6Lead contact *Correspondence: [email protected] Running title: Fanconi anemia pathway dependency in AML Category: Myeloid Neoplasia 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.23.352070; this version posted October 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Key Points Dependency on the Fanconi anemia (FA) DNA interstrand crosslink repair pathway is identified in AML. -
Phylogeny and Evolution of Aldehyde Dehydrogenase-Homologous Folate Enzymes
Chemico-Biological Interactions 191 (2011) 122–128 Contents lists available at ScienceDirect Chemico-Biological Interactions journal homepage: www.elsevier.com/locate/chembioint Phylogeny and evolution of aldehyde dehydrogenase-homologous folate enzymes Kyle C. Strickland a, Roger S. Holmes b, Natalia V. Oleinik a, Natalia I. Krupenko a, Sergey A. Krupenko a,∗ a Department of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC 29425 USA b School of Biomolecular and Physical Sciences, Griffith University, Nathan 4111 Brisbane, Queensland, Australia article info abstract Article history: Folate coenzymes function as one-carbon group carriers in intracellular metabolic pathways. Folate- Available online 6 January 2011 dependent reactions are compartmentalized within the cell and are catalyzed by two distinct groups of enzymes, cytosolic and mitochondrial. Some folate enzymes are present in both compartments Keywords: and are likely the products of gene duplications. A well-characterized cytosolic folate enzyme, FDH Folate metabolism (10-formyltetrahydro-folate dehydrogenase, ALDH1L1), contains a domain with significant sequence Mitochondria similarity to aldehyde dehydrogenases. This domain enables FDH to catalyze the NADP+-dependent 10-Formyltetrahydrofolate dehydrogenase conversion of short-chain aldehydes to corresponding acids in vitro. The aldehyde dehydrogenase-like Aldehyde dehydrogenase Domain structure reaction is the final step in the overall FDH mechanism, by which a tetrahydrofolate-bound formyl group + Evolution is oxidized to CO2 in an NADP -dependent fashion. We have recently cloned and characterized another folate enzyme containing an ALDH domain, a mitochondrial FDH. Here the biological roles of the two enzymes, a comparison of the respective genes, and some potential evolutionary implications are dis- cussed. -
Aldehyde Dehydrogenase, Liver Disease and Cancer Wenjun Wang1, Chunguang Wang2, Hongxin Xu1, Yanhang Gao1
Int. J. Biol. Sci. 2020, Vol. 16 921 Ivyspring International Publisher International Journal of Biological Sciences 2020; 16(6): 921-934. doi: 10.7150/ijbs.42300 Review Aldehyde Dehydrogenase, Liver Disease and Cancer Wenjun Wang1, Chunguang Wang2, Hongxin Xu1, Yanhang Gao1 1. Department of Hepatology, The First Hospital of Jilin University, Jilin University, Changchun, Jilin, 130021, China. 2. Department of Thoracic & Cardiovascular Surgery, Second Clinical College, Jilin University, Changchun, 130041, China. Corresponding author: Yanhang Gao, MD., PhD., Department of Hepatology, The First Hospital of Jilin University, Jilin University, Changchun, Jilin, 130021, China. Email: [email protected]. Tel: +86 15804303019; +86 431 81875121; +86 431 81875106; Fax number: 0431-81875106. © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2019.11.20; Accepted: 2020.01.03; Published: 2020.01.22 Abstract Acetaldehyde dehydrogenase 2 (ALDH2) is the key enzyme responsible for metabolism of the alcohol metabolite acetaldehyde in the liver. In addition to conversion of the acetaldehyde molecule, ALDH is also involved in other cellular functions. Recently, many studies have investigated the involvement of ALDH expression in viral hepatitis, alcoholic liver disease (ALD), non-alcoholic fatty liver disease (NAFLD), liver fibrosis, and liver cancer. Notably, ALDH2 expression has been linked with liver cancer risk, as well as pathogenesis and prognosis, and has emerged as a promising therapeutic target. Of note, approximately 8% of the world’s population, and approximately 30-40% of the population in East Asia carry an inactive ALDH2 gene. -
Downloaded from Consensuspathdb Collection We Defined High-Confidence MTHFD2-Interacting Pro- (
Koufaris and Nilsson Cancer & Metabolism (2018) 6:12 https://doi.org/10.1186/s40170-018-0185-4 RESEARCH Open Access Protein interaction and functional data indicate MTHFD2 involvement in RNA processing and translation Costas Koufaris1,2,3 and Roland Nilsson1,2,3* Abstract Background: The folate-coupled metabolic enzyme MTHFD2 is overexpressed in many tumor types and required for cancer cell proliferation, and is therefore of interest as a potential cancer therapeutic target. However, recent evidence suggests that MTHFD2 has a non-enzymatic function which may underlie the dependence of cancer cells on this protein. Understanding this non-enzymatic function is important for optimal targeting of MTHFD2 in cancer. Methods: To identify potential non-enzymatic functions of MTHFD2, we defined its interacting proteins using co-immunoprecipitation and mass spectrometry and integrated this information with large-scale co-expression analysis, protein dynamics, and gene expression response to MTHFD2 knockdown. Results: We found that MTHFD2 physically interacts with a set of nuclear proteins involved in RNA metabolism and translation, including components of the small ribosomal subunit and multiple members of the RNA-processing hnRNP family. Interacting proteins were also in general co-expressed with MTHFD2 in experiments that stimulate or repress proliferation, suggesting a close functional relationship. Also, unlike other folate one-carbon enzymes, the MTHFD2 protein has a short half-life and responds rapidly to serum. Finally, shRNA against MTHFD2 depletes several of its interactors and yields an overall transcriptional response similar to targeted inhibition of certain ribosomal subunits. Conclusions: Taken together, our findings suggest a novel function of MTHFD2 in RNA metabolism and translation. -
Metabolic Enzyme Expression Highlights a Key Role for MTHFD2 and the Mitochondrial Folate Pathway in Cancer
ARTICLE Received 1 Nov 2013 | Accepted 17 Dec 2013 | Published 23 Jan 2014 DOI: 10.1038/ncomms4128 Metabolic enzyme expression highlights a key role for MTHFD2 and the mitochondrial folate pathway in cancer Roland Nilsson1,2,*, Mohit Jain3,4,5,6,*,w, Nikhil Madhusudhan3,4,5, Nina Gustafsson Sheppard1,2, Laura Strittmatter3,4,5, Caroline Kampf7, Jenny Huang8, Anna Asplund7 & Vamsi K. Mootha3,4,5 Metabolic remodeling is now widely regarded as a hallmark of cancer, but it is not clear whether individual metabolic strategies are frequently exploited by many tumours. Here we compare messenger RNA profiles of 1,454 metabolic enzymes across 1,981 tumours spanning 19 cancer types to identify enzymes that are consistently differentially expressed. Our meta- analysis recovers established targets of some of the most widely used chemotherapeutics, including dihydrofolate reductase, thymidylate synthase and ribonucleotide reductase, while also spotlighting new enzymes, such as the mitochondrial proline biosynthetic enzyme PYCR1. The highest scoring pathway is mitochondrial one-carbon metabolism and is centred on MTHFD2. MTHFD2 RNA and protein are markedly elevated in many cancers and correlated with poor survival in breast cancer. MTHFD2 is expressed in the developing embryo, but is absent in most healthy adult tissues, even those that are proliferating. Our study highlights the importance of mitochondrial compartmentalization of one-carbon metabolism in cancer and raises important therapeutic hypotheses. 1 Unit of Computational Medicine, Department of Medicine, Karolinska Institutet, 17176 Stockholm, Sweden. 2 Center for Molecular Medicine, Karolinska Institutet, 17176 Stockholm, Sweden. 3 Broad Institute, Cambridge, Massachusetts 02142, USA. 4 Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA. -
Cells in Diabetic Mice
ARTICLE Received 12 Jan 2016 | Accepted 18 Jul 2016 | Published 30 Aug 2016 DOI: 10.1038/ncomms12631 OPEN Aldehyde dehydrogenase 1a3 defines a subset of failing pancreatic b cells in diabetic mice Ja Young Kim-Muller1,*, Jason Fan1,2,*, Young Jung R. Kim2, Seung-Ah Lee1, Emi Ishida1, William S. Blaner1 & Domenico Accili1 Insulin-producing b cells become dedifferentiated during diabetes progression. An impaired ability to select substrates for oxidative phosphorylation, or metabolic inflexibility, initiates progression from b-cell dysfunction to b-cell dedifferentiation. The identification of pathways involved in dedifferentiation may provide clues to its reversal. Here we isolate and functionally characterize failing b cells from various experimental models of diabetes and report a striking enrichment in the expression of aldehyde dehydrogenase 1 isoform A3 (ALDH þ )asb cells become dedifferentiated. Flow-sorted ALDH þ islet cells demonstrate impaired glucose- induced insulin secretion, are depleted of Foxo1 and MafA, and include a Neurogenin3- positive subset. RNA sequencing analysis demonstrates that ALDH þ cells are characterized by: (i) impaired oxidative phosphorylation and mitochondrial complex I, IV and V; (ii) activated RICTOR; and (iii) progenitor cell markers. We propose that impaired mitochondrial function marks the progression from metabolic inflexibility to dedifferentiation in the natural history of b-cell failure. 1 Naomi Berrie Diabetes Center and Department of Medicine, Columbia University, New York, New York 10032, USA. 2 Department of Genetics and Integrated Program in Cellular, Molecular and Biomedical Studies, Columbia University, New York, New York 10032, USA. * These authors contributed equally to this work. Correspondence and requests for materials should be addressed to D.A. -
Imiquimod Has Strain-Dependent Effects in Mice and Does Not Uniquely Model Human Psoriasis William R
Swindell et al. Genome Medicine (2017) 9:24 DOI 10.1186/s13073-017-0415-3 RESEARCH Open Access Imiquimod has strain-dependent effects in mice and does not uniquely model human psoriasis William R. Swindell1,2*†, Kellie A. Michaels3, Andrew J. Sutter3, Doina Diaconu3, Yi Fritz3, Xianying Xing2, Mrinal K. Sarkar2, Yun Liang2, Alex Tsoi2, Johann E. Gudjonsson2† and Nicole L. Ward3,4† Abstract Background: Imiquimod (IMQ) produces a cutaneous phenotype in mice frequently studied as an acute model of human psoriasis. Whether this phenotype depends on strain or sex has never been systematically investigated on a large scale. Such effects, however, could lead to conflicts among studies, while further impacting study outcomes and efforts to translate research findings. Methods: RNA-seq was used to evaluate the psoriasiform phenotype elicited by 6 days of Aldara (5% IMQ) treatment in both sexes of seven mouse strains (C57BL/6 J (B6), BALB/cJ, CD1, DBA/1 J, FVB/NJ, 129X1/SvJ, and MOLF/EiJ). Results: In most strains, IMQ altered gene expression in a manner consistent with human psoriasis, partly due to innate immune activation and decreased homeostatic gene expression. The response of MOLF males was aberrant, however, with decreased expression of differentiation-associated genes (elevated in other strains). Key aspects of the IMQ response differed between the two most commonly studied strains (BALB/c and B6). Compared with BALB/c, the B6 phenotype showed increased expression of genes associated with DNA replication, IL-17A stimulation, and activated CD8+ T cells, but decreased expression of genes associated with interferon signaling and CD4+ T cells. -
Aldehyde Dehydrogenase Is Used by Cancer Cells for Energy Metabolism
OPEN Experimental & Molecular Medicine (2016) 48, e272; doi:10.1038/emm.2016.103 & 2016 KSBMB. All rights reserved 2092-6413/16 www.nature.com/emm ORIGINAL ARTICLE Aldehyde dehydrogenase is used by cancer cells for energy metabolism Joon Hee Kang1,8, Seon-Hyeong Lee1,8, Dongwan Hong2, Jae-Seon Lee1, Hee-Sung Ahn3,4, Ju-Hyun Ahn5,6, Tae Wha Seong1, Chang-Hun Lee1, Hyonchol Jang1, Kyeong Man Hong7, Cheolju Lee3,4, Jae-Ho Lee5,6 and Soo-Youl Kim1 We found that non-small-cell lung cancer (NSCLC) cells express high levels of multiple aldehyde dehydrogenase (ALDH) isoforms via an informatics analysis of metabolic enzymes in NSCLC and immunohistochemical staining of NSCLC clinical tumor samples. Using a multiple reaction-monitoring mass spectrometry analysis, we found that multiple ALDH isozymes were generally abundant in NSCLC cells compared with their levels in normal IMR-90 human lung cells. As a result of the catalytic reaction mediated by ALDH, NADH is produced as a by-product from the conversion of aldehyde to carboxylic acid. We hypothesized that the NADH produced by ALDH may be a reliable energy source for ATP production in NSCLC. This study revealed that NADH production by ALDH contributes significantly to ATP production in NSCLC. Furthermore, gossypol, a pan-ALDH inhibitor, markedly reduced the level of ATP. Gossypol combined with phenformin synergistically reduced the ATP levels, which efficiently induced cell death following cell cycle arrest. Experimental & Molecular Medicine (2016) 48, e272; doi:10.1038/emm.2016.103; published online 25 November 2016 INTRODUCTION ALDH1A1-positive NSCLC cells are 100 times more Although tyrosine kinase inhibitor therapy achieves higher tumorigenic than ALDH1A1-negative NSCLC cells.3 Although objective response rates and longer remissions in lung cancer, ALDH1A1- and ALDH3A1-positive tumors are considered to relapses occur after 10–14 months owing to drug resistance.1,2 be malignant, the specific role of ALDH in the growth and Therefore, understanding the mechanisms that underlie the survival of NSCLC remains unclear. -
Cytosolic 10-Formyltetrahydrofolate Dehydrogenase Regulates Glycine Metabolism in Mouse Liver Natalia I
www.nature.com/scientificreports OPEN Cytosolic 10-formyltetrahydrofolate dehydrogenase regulates glycine metabolism in mouse liver Natalia I. Krupenko1,2, Jaspreet Sharma1, Peter Pediaditakis1, Baharan Fekry1,5, Kristi L. Helke3, Xiuxia Du4, Susan Sumner1,2 & Sergey A. Krupenko1,2* ALDH1L1 (10-formyltetrahydrofolate dehydrogenase), an enzyme of folate metabolism highly expressed in liver, metabolizes 10-formyltetrahydrofolate to produce tetrahydrofolate (THF). This reaction might have a regulatory function towards reduced folate pools, de novo purine biosynthesis, and the fux of folate-bound methyl groups. To understand the role of the enzyme in cellular metabolism, Aldh1l1−/− mice were generated using an ES cell clone (C57BL/6N background) from KOMP repository. Though Aldh1l1−/− mice were viable and did not have an apparent phenotype, metabolomic analysis indicated that they had metabolic signs of folate defciency. Specifcally, the intermediate of the histidine degradation pathway and a marker of folate defciency, formiminoglutamate, was increased more than 15-fold in livers of Aldh1l1−/− mice. At the same time, blood folate levels were not changed and the total folate pool in the liver was decreased by only 20%. A two-fold decrease in glycine and a strong drop in glycine conjugates, a likely result of glycine shortage, were also observed in Aldh1l1−/− mice. Our study indicates that in the absence of ALDH1L1 enzyme, 10-formyl-THF cannot be efciently metabolized in the liver. This leads to the decrease in THF causing reduced generation of glycine from serine and impaired histidine degradation, two pathways strictly dependent on THF. Folate coenzymes participate in numerous biochemical reactions of one-carbon transfer1. Te network of folate utilizing reactions is referred to as one-carbon metabolism with more than two dozen enzymes participating in folate conversions. -
Aldehyde Dehydrogenase 1 (Aldh1) Genes in Cancer Clinical Prognosis Outcomes
Yale University EliScholar – A Digital Platform for Scholarly Publishing at Yale Public Health Theses School of Public Health 1-1-2016 Aldehyde Dehydrogenase 1 (aldh1) Genes In Cancer Clinical Prognosis Outcomes Mengyi Ding Yale University, [email protected] Follow this and additional works at: https://elischolar.library.yale.edu/ysphtdl Recommended Citation Ding, Mengyi, "Aldehyde Dehydrogenase 1 (aldh1) Genes In Cancer Clinical Prognosis Outcomes" (2016). Public Health Theses. 1066. https://elischolar.library.yale.edu/ysphtdl/1066 This Open Access Thesis is brought to you for free and open access by the School of Public Health at EliScholar – A Digital Platform for Scholarly Publishing at Yale. It has been accepted for inclusion in Public Health Theses by an authorized administrator of EliScholar – A Digital Platform for Scholarly Publishing at Yale. For more information, please contact [email protected]. Aldehyde Dehydrogenase 1 (ALDH1) Genes in Cancer Clinical Prognosis Outcomes Mengyi Ding M.P.H. Thesis Class of 2016 Department of Environmental Health Science Yale University School of Public Health First Reader: Vasilis Vasiliou, PhD Second Reader: Feng Dai, PhD ABSTRACT Background & Hypothesis It has become clear that ALDH1 genes are involved in the pathobiology of various human cancers. Several lines of evidence indicated that ALDH1 gene expression in tumors may be associated with clinical prognosis outcomes. This hypothesis of our study is that ALDH1 genes may be used to predict human cancer prognosis. In order to test this hypothesis, a systematic review of published articles, a meta-analysis using Random-Effects model was conducted to assess the association between ALDH1 genes and clinicopathological features as well as survival outcomes. -
Genome-Scale Modeling of Redox Metabolism and Therapeutic Response in Radiation-Resistant Tumors
GENOME-SCALE MODELING OF REDOX METABOLISM AND THERAPEUTIC RESPONSE IN RADIATION-RESISTANT TUMORS A Dissertation Presented to The Academic Faculty by Joshua Elliott Lewis In Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in Bioinformatics in the Wallace H. Coulter Department of Biomedical Engineering Georgia Institute of Technology & Emory University May 2020 COPYRIGHT © 2020 BY JOSHUA E. LEWIS GENOME-SCALE MODELING OF REDOX METABOLISM AND THERAPEUTIC RESPONSE IN RADIATION-RESISTANT TUMORS Approved by: Dr. Melissa L. Kemp, PhD, Advisor Dr. David S. Yu, MD, PhD Department of Biomedical Engineering Department of Radiation Oncology Georgia Institute of Technology Emory University Dr. Greg Gibson, PhD Dr. Lee A. Cooper, PhD School of Biological Sciences Department of Pathology Georgia Institute of Technology Northwestern University Dr. Eberhard O. Voit, PhD Department of Biomedical Engineering Georgia Institute of Technology Date Approved: March 20, 2020 To my family ACKNOWLEDGEMENTS My development as a scientist can be attributed to the synergistic involvement of a number of people who I would like to gratefully acknowledge. First, I would like to thank my PhD advisor, Dr. Melissa Kemp, for providing me with tremendous guidance, challenging me to continually improve, and instilling in me a passion for scientific research. Next, I would like to thank my committee members for their valuable input and advice throughout my PhD training: Dr. Lee Cooper, Dr. Greg Gibson, Dr. Eberhard Voit, and Dr. David Yu. I would also like to thank research collaborators Dr. Cristina Furdui and Dr. David Boothman, as well as my previous and current financial support through the MD/PhD program (NIH T32 GM008169-29), Computational Biology and Predictive Health Training Grant (NIH T32 GM105490), and Ruth L.