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Comparative Dissection of Three Giant Genomes: Allium Cepa, Allium Sativum, and Allium Ursinum
International Journal of Molecular Sciences Article Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum Vratislav Peška 1,* , Terezie Mandáková 2 , Veronika Ihradská 1,2,† and Jiˇrí Fajkus 1,2,* 1 Institute of Biophysics, The Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic; [email protected] 2 Mendel Centre for Plant Genomics and Proteomics, CEITEC, Masaryk University, Kamenice 5, CZ-62500 Brno, Czech Republic; [email protected] * Correspondence: [email protected] (V.P.); [email protected] (J.F.); Tel.: +420-541-517-199 (V.P.); +420-549-494-003 (J.F.) † Current address: Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Center, Slovak Academy of Sciences, Akademická 2, P.O. Box 39A, 950 07 Nitra, Slovakia. Received: 4 January 2019; Accepted: 2 February 2019; Published: 9 February 2019 Abstract: Knowledge of the fascinating world of DNA repeats is continuously being enriched by newly identified elements and their hypothetical or well-established biological relevance. Genomic approaches can be used for comparative studies of major repeats in any group of genomes, regardless of their size and complexity. Such studies are particularly fruitful in large genomes, and useful mainly in crop plants where they provide a rich source of molecular markers or information on indispensable genomic components (e.g., telomeres, centromeres, or ribosomal RNA genes). Surprisingly, in Allium species, a comprehensive comparative study of repeats is lacking. Here we provide such a study of two economically important species, Allium cepa (onion), and A. sativum (garlic), and their distantly related A. -
Entomology 101 Jason J
Entomology 101 Jason J. Dombroskie Manager, Cornell U. Insect Collection Coordinator, Insect Diagnostic Lab This material [email protected] can only be used for CCE MGV audiences. Outline • What is an insect? • Anatomy • Life cycles • Diversity • Major orders • Herbivory Corydalus cornutus Cornell U. Insect Collection • > 7 million specimens • ~200 000 species • worldwide coverage • http://cuic.entomology.cornell.edu/ • on facebook Insect Diagnostic Lab • ~700 IDs per year • 10-20 000 IDs for NYS Dept. Ag. & Markets • occasionally IDs can be made from a photo • mostly local, but some submissions worldwide • $25 fee • http://entomology.cornell.edu/IDL Arthropods Regier, et al. 2005 What is an insect? • 3 main body parts • 6 jointed legs • 1 pair of antennae • compound eyes • usually some sort of metamorphosis Booneacris glacialis Head • antennae • mouthparts • compound eyes • ocelli Monochamus scutellatus Popillia japonica Tetanocera sp. Antheraea polyphemus wikimedia commons labrum maxilla mandible labium Corydalus cornutus Polygonia progne Aedes sp. Hybomitra zonalis Monochamus notatus Aeshna canadensis Isoptera Darapsa myron Thorax • six legs • four wings or less • muscular Amateur Entomologists’ Society Entomologists’ Amateur Limenitis archippus Lethocerus americanus Zeugomantispa minuta Machimus sp. with Herpetogramma pertextalis wikimedia commons Tipula apicalis Cybister fimbriolatus Elasmucha lateralis Automeris io Abdomen • internal organs • genitalia • ovipositor Ophiogomphus rupinsulensis Lauxania shewelli Merope tuber Adoxophyes -
Nutritional and Therapeutic Potential of Allium Vegetables
18 Journal of Nutritional Therapeutics, 2017, 6, 18-37 Nutritional and Therapeutic Potential of Allium Vegetables Ravi Kant Upadhyay* Department of Zoology, D D U Gorakhpur University, Gorakhpur 273009, U.P., India Abstract: Allium vegetables are highly nutritional, its dietary use improves digestion and mental health and lower down cholesterol level. Use of onions, garlic, scallions, chives and leeks show therapeutic efficacy against cardiovascular disease, hyperglycemia, and stomach cancer, Onions contain allylsulfides and flavonoids particularly quercetin that is an important anti-oxidative and reduces hepatocytes apoptosis in streptozotocin-induced diabetic rat. Steroid saponins and sapogenins present in garlic bulbs are used to prepare soft soaps. β-chlorogenin is a characteristic steroid sapogenin from garlic that is used for skin ointment and as a shiner. Both garlic paste and soft garlic preparations are used for flavoring the food items. Garlic products that contain the most safe, effective, stable, and odorless components are the most valuable as dietary supplements. Garlic also contains non sulfur compounds such as steroid saponins. Alliums showed antimicrobial, antithrombotic, antitumor, anti-hyperlipidaemic, antiarthritic, anti-hyperglycemic anticarcinogenic potential. Allium vegetables contain organosulfur compounds, including DATS, diallyl disulfide (DADS), ajoene, and S- allylmercaptocysteine (SAMC), have been found to induce cell cycle arrest in cancer cells. Alliums have great ethnomedicinal importance as these are used as native remedies against wide spectrum of diseases including diabetes. Allium origin natural products are of great therapeutic and dietary use. These are most preferred items used by nutritionists, physicians, food technologists, food chemists. Green allium vegetables are good source of natural pharmaceutics which are good for health and act against nutritionally induced acute and chronic diseases. -
The Adaptive Function of Tiger Moth Clicks Against Echolocating Bats: an Experimental and Synthetic Approach
2811 The Journal of Experimental Biology 209, 2811 Published by The Company of Biologists 2006 doi:10.1242/jeb.02367 Corrigendum Ratcliffe, J. M. and Fullard, J. H. (2005). The adaptive function of tiger moth clicks against echolocating bats: an experimental and synthetic approach. J. Exp. Biol. 208, 4689-4698 There was in error in the legend to Fig.·3. The published version reads: Parameter functions for three gleaning echolocation call sequences of an individual M. septentrionalis. (A) Attack on non-arctiid moth; (B) attack on muted C. tenera; (C) attack on intact C. tenera. See Fig.·1 for further details. The correct version should read: Fig.·3. Parameter functions for three aerial hawking echolocation call sequences of an individual M. septentrionalis. (A) Attack on non-arctiid moth; (B) attack on muted C. tenera; (C) attack on intact C. tenera. See Fig.·1 for further details. The authors apologise for this mistake and any inconvenience caused to readers. THE JOURNAL OF EXPERIMENTAL BIOLOGY The Journal of Experimental Biology 208, 4689-4698 4689 Published by The Company of Biologists 2005 doi:10.1242/jeb.01927 The adaptive function of tiger moth clicks against echolocating bats: an experimental and synthetic approach John M. Ratcliffe* and James H. Fullard Department of Zoology, University of Toronto at Mississauga, Toronto, Ontario, M5S 3G5, Canada *Author for correspondence at present address: Department of Neurobiology and Behavior, Cornell University, Seeley G. Mudd Hall, Ithaca, NY 14853, USA (e-mail: [email protected]) Accepted 12 October 2005 Summary We studied the efficiency and effects of the multiple during aerial hawking attacks: tymbal clicks were sensory cues of tiger moths on echolocating bats. -
UPDATED 18Th February 2013
7th February 2015 Welcome to my new seed trade list for 2014-15. 12, 13 and 14 in brackets indicates the harvesting year for the seed. Concerning seed quantity: as I don't have many plants of each species, seed quantity is limited in most cases. Therefore, for some species you may only get a few seeds. Many species are harvested in my garden. Others are surplus from trade and purchase. OUT: Means out of stock. Sometimes I sell surplus seed (if time allows), although this is unlikely this season. NB! Cultivars do not always come true. I offer them anyway, but no guarantees to what you will get! Botanical Name (year of harvest) NB! Traditional vegetables are at the end of the list with (mostly) common English names first. Acanthopanax henryi (14) Achillea sibirica (13) Aconitum lamarckii (12) Achyranthes aspera (14, 13) Adenophora khasiana (13) Adenophora triphylla (13) Agastache anisata (14,13)N Agastache anisata alba (13)N Agastache rugosa (Ex-Japan) (13) (two varieties) Agrostemma githago (13)1 Alcea rosea “Nigra” (13) Allium albidum (13) Allium altissimum (Persian Shallot) (14) Allium atroviolaceum (13) Allium beesianum (14,12) Allium brevistylum (14) Allium caeruleum (14)E Allium carinatum ssp. pulchellum (14) Allium carinatum ssp. pulchellum album (14)E Allium carolinianum (13)N Allium cernuum mix (14) E/N Allium cernuum “Dark Scape” (14)E Allium cernuum ‘Dwarf White” (14)E Allium cernuum ‘Pink Giant’ (14)N Allium cernuum x stellatum (14)E (received as cernuum , but it looks like a hybrid with stellatum, from SSE, OR KA A) Allium cernuum x stellatum (14)E (received as cernuum from a local garden centre) Allium clathratum (13) Allium crenulatum (13) Wild coll. -
Edgartown Produced in 2012
BioMap2 CONSERVING THE BIODIVERSITY OF MASSACHUSETTS IN A CHANGING WORLD Edgartown Produced in 2012 This report and associated map provide information about important sites for biodiversity conservation in your area. This information is intended for conservation planning, and is not intended for use in state regulations. BioMap2 Conserving the Biodiversity of Massachusetts in a Changing World Table of Contents Introduction What is BioMap2 – Purpose and applications One plan, two components Understanding Core Habitat and its components Understanding Critical Natural Landscape and its components Understanding Core Habitat and Critical Natural Landscape Summaries Sources of Additional Information Edgartown Overview Core Habitat and Critical Natural Landscape Summaries Elements of BioMap2 Cores Core Habitat Summaries Elements of BioMap2 Critical Natural Landscapes Critical Natural Landscape Summaries Natural Heritage Massachusetts Division of Fisheries and Wildlife 1 Rabbit Hill Rd., Westborough, MA 01581 & Endangered phone: 508-389-6360 fax: 508-389-7890 Species Program For more information on rare species and natural communities, please see our fact sheets online at www.mass.gov/nhesp. BioMap2 Conserving the Biodiversity of Massachusetts in a Changing World Introduction The Massachusetts Department of Fish & Game, through the Division of Fisheries and Wildlife’s Natural Heritage & Endangered Species Program (NHESP), and The Nature Conservancy’s Massachusetts Program developed BioMap2 to protect the state’s biodiversity in the context of climate change. BioMap2 combines NHESP’s 30 years of rigorously documented rare species and natural community data with spatial data identifying wildlife species and habitats that were the focus of the Division of Fisheries and Wildlife’s 2005 State Wildlife Action Plan (SWAP). -
2009 Wisconsin – Illinois Germplasm Reconnaissance and Collection Trips
NCRPIS 2009 Wisconsin – Illinois Germplasm Reconnaissance and Collection Trips August 3 – 8, 2009 September 21 – 29, 2009 North Central Regional Plant Introduction Station – Ames, IA Wisconsin Germplasm Sites Sauk County Washington County Cornus rugosa Fraxinus nigra (2) Fraxinus pennsylvanica Dane County Ilex verticillata Fraxinus americana Prunella vulgaris Fraxinus pennsylvanica Viburnum lentago Hypericum perforatum Spiraea alba Waukesha County Grant County Dasiphora fruticosa Cephalanthus occidentalis Fraxinus nigra Cornus alternifolia Fraxinus pennsylvanica Cornus rugosa Larix laricina Rock County Eupatorium maculatum Prunella vulgaris Fraxinus pennsylvanica Fraxinus pennsylvanica Dodge County Hypericum perforatum Cornus racemosa Monarda fistulosa Columbia County Fraxinus pennsylvanica Prunella vulgaris Aronia melanocarpa Prunella vulgaris Rudbeckia hirta Carpinus caroliniana Rudbeckia laciniata Cephalanthus occidentalis Jefferson County Staphylea trifolia Cornus amomum subsp. obliqua Fraxinus pennsylvanica Viburnum lentago Fraxinus nigra Fraxinus pennsylvanica Iowa County Ilex verticillata Diervilla lonicera Spiraea alba Fraxinus nigra Viburnum lentago Fraxinus pennsylvanica Rhus typhina Map of locations where germplasm was collected Illinois Germplasm Sites Winnebago County Ptelea trifoliata Cornus alternifolia Jo Daviess County Asclepias incarnata Clematis virginiana Cornus drummondii Fraxinus pennsylvanica Rudbeckia laciniata Spiraea alba Viburnum lentago Carroll County Rudbeckia laciniata Rudbeckia triloba Hypericum perforatum -
Rain Gardens for Kalamazoo County
Patricia A.S. Crowley Office of the Kalamazoo County Drain Commissioner 201 W. Kalamazoo Avenue Rain Garden Designs for Kalamazoo, MI 49007 www.kalcounty.com/drain Kalamazoo County Installation Guidelines ∗ Visit www.raingardens.org to learn about the benefits of rain gardens. ∗ Locate the rain garden at least 10 feet from a foundaon or basement in paral or full sun, in a relavely flat area. ∗ Size the garden to be about 15-20% of the area from which it will receive runoff (e.g. roof, lawn, parking lot) for well-drained, sandy soils. Make the rain garden larger (30-45% of the drainage area) in clayey soils. ∗ Kidney, oval, or other long shapes work well, with the length about twice the width. Direct runoff into the garden’s long edge via a downspout or depression. ∗ Call MISS DIG at 811 or 1-800-482-7171 before you dig. ∗ For sandy or silty well-drained soils, dig a shallow basin about 3-6 inches deep, making the boom level and gently sloping the edges or building a berm around the lower edge. You may want to make the basin slightly deeper for clayey soils (5-7 inches). ∗ Plant nave plant plugs about 12-18 inches apart and add a 2 inch layer of ∗ To order a soil test kit self-mailer for $25 to find shredded hardwood mulch or another ground cover to suppress weeds. out your soil’s type and nutrient needs visit Using edging can help keep grass out of your garden and provide definion. hp:/bookstore.msue.msu.edu ∗ Water plants in the first two years unl established, cut back plants in the fall or spring, and divide plants and weed as needed. -
Moths of the Malheur National Wildlife Refuge
MOTHS OF UMATILLA NATIONAL WILDLIFE REFUGE: Results from 10 sites Sampled May 22-23, 2017 Dana Ross 1005 NW 30th Street Corvallis, OR 97330 (541) 758-3006 [email protected] SUMMARY Macro-moths were sampled from the Umatilla National Wildlife Refuge for a third time 22-23 May, 2017 as part of an ongoing pollinator inventory. Blacklight traps were deployed for a single night at ten sites representative of major plant communities in the McCormack and Paterson Units. A grand total of 331 specimens and 36 moth species were sampled. Of those, 17 species (47%) were documented from the refuge for the first time. In a somewhat larger geographical context, 21 species were recorded for the first (8), second (7) or third (6) time from Morrow County, Oregon while 4 species were documented for the first (1) or second (3) time from Benton County, Washington. INTRODUCTION National Wildlife Refuges protect important habitats for many plant and animal species. Refuge inventories have frequently included plants, birds and mammals, but insects - arguably the most abundant and species-rich group in any terrestrial habitat - have largely been ignored. Small size, high species richness and a lack of identification resources have all likely contributed to their being overlooked. Certain groups such as moths, however, can be easily and inexpensively sampled using light traps and can be identified by regional moth taxonomists. Once identified, many moth species can be tied to known larval hostplant species at a given site, placing both insect and plant within a larger ecological context. Moths along with butterflies belong to the insect Order Lepidoptera. -
Species of Greatest Conservation Need 2015 Wildlife Action Plan
RHODE ISLAND SPECIES OF GREATEST CONSERVATION NEED 2015 WILDLIFE ACTION PLAN RI SGCN 2015 (454) Contents SGCN Mammals ............................................................................................................................. 2 SGCN Birds .................................................................................................................................... 3 SGCN Herptofauna ......................................................................................................................... 6 SGCN Fish ...................................................................................................................................... 7 SGCN Invertebrates ........................................................................................................................ 9 1 RHODE ISLAND SPECIES OF GREATEST CONSERVATION NEED 2015 WILDLIFE ACTION PLAN SGCN Mammals (21) Scientific Name Common Name Balaenoptera physalus Fin Whale Eptesicus fuscus Big Brown Bat Eubalaena glacialis North Atlantic Right Whale Lasionycteris noctivagans Silver-haired Bat Lasiurus borealis Eastern Red Bat Lasiurus cinereus Hoary Bat Lynx rufus Bobcat Megaptera novaeangliae Humpback Whale Microtus pennsylvanicus provectus Block Island Meadow Vole Myotis leibii Eastern Small-footed Myotis Myotis lucifugus Little Brown Myotis Myotis septentrionalis Northern Long-eared Bat Perimyotis subflavus Tri-colored Bat Phoca vitulina Harbor Seal Phocoena phocoena Harbor Porpoise Scalopus aquaticus Eastern Mole Sorex (Otisorex) fumeus Smoky -
Bioblitz! OK 2019 - Cherokee County Moth List
BioBlitz! OK 2019 - Cherokee County Moth List Sort Family Species 00366 Tineidae Acrolophus mortipennella 00372 Tineidae Acrolophus plumifrontella Eastern Grass Tubeworm Moth 00373 Tineidae Acrolophus popeanella 00383 Tineidae Acrolophus texanella 00457 Psychidae Thyridopteryx ephemeraeformis Evergreen Bagworm Moth 01011 Oecophoridae Antaeotricha schlaegeri Schlaeger's Fruitworm 01014 Oecophoridae Antaeotricha leucillana 02047 Gelechiidae Keiferia lycopersicella Tomato Pinworm 02204 Gelechiidae Fascista cercerisella 02301.2 Gelechiidae Dichomeris isa 02401 Yponomeutidae Atteva aurea 02401 Yponomeutidae Atteva aurea Ailanthus Webworm Moth 02583 Sesiidae Synanthedon exitiosa 02691 Cossidae Fania nanus 02694 Cossidae Prionoxystus macmurtrei Little Carpenterworm Moth 02837 Tortricidae Olethreutes astrologana The Astrologer 03172 Tortricidae Epiblema strenuana 03202 Tortricidae Epiblema otiosana 03494 Tortricidae Cydia latiferreanus Filbert Worm 03573 Tortricidae Decodes basiplaganus 03632 Tortricidae Choristoneura fractittana 03635 Tortricidae Choristoneura rosaceana Oblique-banded Leafroller moth 03688 Tortricidae Clepsis peritana 03695 Tortricidae Sparganothis sulfureana Sparganothis Fruitworm Moth 03732 Tortricidae Platynota flavedana 03768.99 Tortricidae Cochylis ringsi 04639 Zygaenidae Pyromorpha dimidiata Orange-patched Smoky Moth 04644 Megalopygidae Lagoa crispata Black Waved Flannel Moth 04647 Megalopygidae Megalopyge opercularis 04665 Limacodidae Lithacodes fasciola 04677 Limacodidae Phobetron pithecium Hag Moth 04691 Limacodidae -
Biological Value and Morphological Traits of Pollen of Selected Garlic Species Allium L
ACTA AGROBOTANICA Vol. 60 (1): 67 71 2007 BIOLOGICAL VALUE AND MORPHOLOGICAL TRAITS OF POLLEN OF SELECTED GARLIC SPECIES ALLIUM L. Beata Żuraw Department of Botany, Agricultural University, 20 950 Lublin, Akademicka str. 15 e mail: [email protected] Received: 20.04.2007 Summary (A. cernuum), violet (A. aflatunense) to purple (A. atro- This study was conducted in the years 1997 1999. From purpureum). Some species form blue (A. caeruleum) or the collection of the UMCS Botanical Garden, nine species of yellow flowers (A. moly, A. flavum). Most species are garlic were selected (A. aflatunense, A. atropurpureum, A. caeru- grown for cut flowers or as ornamentals on flower beds leum, A. cernuum, A. ledebourianum, A. lineare, A. sphaeroce- due to winter hardiness and low nutritional requirements phalon, A. victorialis, A. ursinum) and one subspecies (A. scoro- (K r z y m i ń s k a , 2003). Flower easily set seeds. Seeds doprasum subsp. jajlae). Pollen grain viability was evaluated on should be sown to the seed-bed in the autumn or directly microscopic slides stained with acetocarmine, germination abi to the soil in the spring (K amenetsky and Gutter- lity on the agar medium and measurements of grains were made m a n , 2000). The easiest way of propagation is the di- on glycerin jelly slides. The studied species were characterized vision of adventitious bulbs that should be set from the by high pollen viability (87 99%) what indicates the great value middle of September up to middle of November. of garlic flowers as a source of protein rich feed for honey bee Flowers of species from the genus L.