Heterotrimeric-G-Protein-Coupled Receptor Signaling in Yeast Mating Pheromone Response*
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Dynamin Functions and Ligands: Classical Mechanisms Behind
1521-0111/91/2/123–134$25.00 http://dx.doi.org/10.1124/mol.116.105064 MOLECULAR PHARMACOLOGY Mol Pharmacol 91:123–134, February 2017 Copyright ª 2017 by The American Society for Pharmacology and Experimental Therapeutics MINIREVIEW Dynamin Functions and Ligands: Classical Mechanisms Behind Mahaveer Singh, Hemant R. Jadhav, and Tanya Bhatt Department of Pharmacy, Birla Institute of Technology and Sciences Pilani, Pilani Campus, Rajasthan, India Received May 5, 2016; accepted November 17, 2016 Downloaded from ABSTRACT Dynamin is a GTPase that plays a vital role in clathrin-dependent pathophysiology of various disorders, such as Alzheimer’s disease, endocytosis and other vesicular trafficking processes by acting Parkinson’s disease, Huntington’s disease, Charcot-Marie-Tooth as a pair of molecular scissors for newly formed vesicles originating disease, heart failure, schizophrenia, epilepsy, cancer, dominant ’ from the plasma membrane. Dynamins and related proteins are optic atrophy, osteoporosis, and Down s syndrome. This review is molpharm.aspetjournals.org important components for the cleavage of clathrin-coated vesicles, an attempt to illustrate the dynamin-related mechanisms involved phagosomes, and mitochondria. These proteins help in organelle in the above-mentioned disorders and to help medicinal chemists division, viral resistance, and mitochondrial fusion/fission. Dys- to design novel dynamin ligands, which could be useful in the function and mutations in dynamin have been implicated in the treatment of dynamin-related disorders. Introduction GTP hydrolysis–dependent conformational change of GTPase dynamin assists in membrane fission, leading to the generation Dynamins were originally discovered in the brain and identi- of endocytic vesicles (Praefcke and McMahon, 2004; Ferguson at ASPET Journals on September 23, 2021 fied as microtubule binding partners. -
Solitary and Repetitive Binding Motifs for the Ap2 Complex Α-Appendage in Amphiphysin and Other Accessory Proteins
SOLITARY AND REPETITIVE BINDING MOTIFS FOR THE AP2 COMPLEX α-APPENDAGE IN AMPHIPHYSIN AND OTHER ACCESSORY PROTEINS Lene E. Olesen*, Eva M. Schmid*, Marijn G. J. Ford#*, Yvonne Vallis, M. Madan Babu, Peter Li, Ian G. Mills∑, Harvey T. McMahon§ and Gerrit J.K. Praefcke♣§ Laboratory of Molecular Biology, Medical Research Council, Neurobiology Division, Hills Road, Cambridge CB2 2QH, UK. ♣ Center for Molecular Medicine Cologne (CMMC), Institute for Genetics, Zülpicher Straße 47, 50674 Köln, Germany. Running Title: Classification of AP2 α-appendage-binding FxDxF and DxF/W motifs § Address correspondence to: Harvey T. McMahon, Email: [email protected]; Tel.: +44(0)1223-402311; Fax: +44(0)1223-402310 or Gerrit J.K. Praefcke, Email [email protected]; Tel.: +49(0)221-470-1561; Fax: +49(0)221-470-6749 Adaptor protein (AP) complexes bind to coated pits, for the platform subdomain of the transmembrane proteins destined for α-appendage. The motif domain of internalisation and to membrane lipids, so amphiphysin1 contains one copy of each of a linking cargo to the accessory internalisation DxF/W and FxDxF motif. We find that the machinery. This machinery interacts with the FxDxF motif is the main determinant for the appendage domains of APs, which have high affinity interaction with the α-adaptin platform and β-sandwich subdomains, appendage. We describe the optimal sequence forming the binding surfaces for interacting of the FxDxF motif using thermodynamic and proteins. Proteins which interact with the structural data and show how sequence subdomains do so via short motifs, usually variation controls the affinities of these motifs found in regions of low structural complexity for the α-appendage. -
BIN1/M-Amphiphysin2 Induces Clustering of Phosphoinositides to Recruit Its Downstream Partner Dynamin
ARTICLE Received 19 May 2014 | Accepted 22 Oct 2014 | Published 9 Dec 2014 DOI: 10.1038/ncomms6647 BIN1/M-Amphiphysin2 induces clustering of phosphoinositides to recruit its downstream partner dynamin Laura Picas1, Julien Viaud2, Kristine Schauer1, Stefano Vanni3, Karim Hnia4, Vincent Fraisier5, Aure´lien Roux6, Patricia Bassereau7,Fre´de´rique Gaits-Iacovoni2, Bernard Payrastre2, Jocelyn Laporte4, Jean-Baptiste Manneville1 & Bruno Goud1 Phosphoinositides play a central role in many physiological processes by assisting the recruitment of proteins to membranes through specific phosphoinositide-binding motifs. How this recruitment is coordinated in space and time is not well understood. Here we show that BIN1/M-Amphiphysin2, a protein involved in T-tubule biogenesis in muscle cells and fre- quently mutated in centronuclear myopathies, clusters PtdIns(4,5)P2 to recruit its down- stream partner dynamin. By using several mutants associated with centronuclear myopathies, we find that the N-BAR and the SH3 domains of BIN1 control the kinetics and the accumu- lation of dynamin on membranes, respectively. We show that phosphoinositide clustering is a mechanism shared by other proteins that interact with PtdIns(4,5)P2, but do not contain a BAR domain. Our numerical simulations point out that clustering is a diffusion-driven process in which phosphoinositide molecules are not sequestered. We propose that this mechanism plays a key role in the recruitment of downstream phosphoinositide-binding proteins. 1 Institut Curie and CNRS UMR 144, 26 rue d’Ulm, 75005 Paris, France. 2 INSERM, UMR1048, Universite´ Toulouse III, Institut des Maladies Me´taboliques et Cardiovasculaires, 1 avenue Jean Poulhe`s, 31432 Toulouse, France. -
Plant Physiology
PLANT PHYSIOLOGY Vince Ördög Created by XMLmind XSL-FO Converter. PLANT PHYSIOLOGY Vince Ördög Publication date 2011 Created by XMLmind XSL-FO Converter. Table of Contents Cover .................................................................................................................................................. v 1. Preface ............................................................................................................................................ 1 2. Water and nutrients in plant ............................................................................................................ 2 1. Water balance of plant .......................................................................................................... 2 1.1. Water potential ......................................................................................................... 3 1.2. Absorption by roots .................................................................................................. 6 1.3. Transport through the xylem .................................................................................... 8 1.4. Transpiration ............................................................................................................. 9 1.5. Plant water status .................................................................................................... 11 1.6. Influence of extreme water supply .......................................................................... 12 2. Nutrient supply of plant ..................................................................................................... -
Differential Physiological Role of BIN1 Isoforms in Skeletal Muscle Development, Function and Regeneration
bioRxiv preprint doi: https://doi.org/10.1101/477950; this version posted December 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Differential physiological role of BIN1 isoforms in skeletal muscle development, function and regeneration Ivana Prokic1,2,3,4, Belinda Cowling1,2,3,4, Candice Kutchukian5, Christine Kretz1,2,3,4, Hichem Tasfaout1,2,3,4, Josiane Hergueux1,2,3,4, Olivia Wendling1,2,3,4, Arnaud Ferry10, Anne Toussaint1,2,3,4, Christos Gavriilidis1,2,3,4, Vasugi Nattarayan1,2,3,4, Catherine Koch1,2,3,4, Jeanne Lainné6,7, Roy Combe2,3,4,8, Laurent Tiret9, Vincent Jacquemond5, Fanny Pilot-Storck9, Jocelyn Laporte1,2,3,4 1Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Illkirch, France 2Centre National de la Recherche Scientifique (CNRS), UMR7104, Illkirch, France 3Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, Illkirch, France 4Université de Strasbourg, Illkirch, France 5Univ Lyon, Université Claude Bernard Lyon 1, CNRS UMR-5310, INSERM U-1217, Institut NeuroMyoGène, 8 avenue Rockefeller, 69373 Lyon, France 6Sorbonne Université, INSERM, Institute of Myology, Centre of Research in Myology, UMRS 974, F- 75013, Paris, France 7Sorbonne Université, Department of Physiology, UPMC Univ Paris 06, Pitié-Salpêtrière Hospital, F- 75013, Paris, France 8CELPHEDIA-PHENOMIN, Institut Clinique de la Souris (ICS), Illkirch, France 9U955 – IMRB, Team 10 - Biology of the neuromuscular system, Inserm, UPEC, Ecole nationale vétérinaire d’Alfort, Maisons-Alfort, 94700, France 10Sorbonne Université, INSERM, Institute of Myology, Centre of Research in Myology, UMRS 794, F- 75013, Paris, France Correspondence to: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/477950; this version posted December 11, 2018. -
Smithsonian Miscellaneous Collections
SMITHSONIAN MJSCELLANEOUS COLLECTIONS VOLUME 81, NUMBER 10 TROPISMS AND SENSE ORGANS OF LEPIDOPTERA BY N. E. McINDOO Senior Entomologist, Deciduous-I'"i nit Insect Investigations, Bureau of Entomology, U. S. Department of Agriculture WMW (Publication 3013) t APR5-k CITY OF WASHINGTON PUBLISHED BY THE SMITHSONIAN INSTITUTION APRIL 4, 1929 SMITHSONIAN MISCELLANEOUS COLLECTIONS VOLUME 81, NUMBER 10 TROPISMS AND SENSE ORGANS OF LEPIDOPTERA BY N. E. McINDOO Senior Entomologist, Deciduous-Fruit Insect Investigations, Bureau of Entomology, U. S. Department of Agriculture (Publication 3013) CITY OF WASHINGTON PUBLISHED BY THE SMITHSONIAN INSTITUTION APRIL 4, 1929 Z^c Bovb (^aPfttnorc (preee BALTIMORE, MD., O. 8. A, TROPISMS AND SENSE ORGANS OF LEPIDOPTERA By N. E. McIndoo senior entomologist, deciduous-fruit insect investigations, bureau of entomology, u. s. department of agriculture CONTENTS PAGE Introduction 2 A. Tropisins 2 I. Phototaxis 3 1. Review of literature : 3 (a) Definitions and problems in the study of light reactions... 3 (b) Are light reactions adaptive ? 4 (c) Is orientation accomplished by selection of trial movements? 5 (d) How do light rays bring about orientation? 5 (e) Do circus movements support Loeb's theory? 5 (f ) What wave lengths stimulate insects most? 6 (g) Light traps are not yet considered successful 9 2. Phototactic experiments on codling-moth larvae 10 II. Chemotaxis 14 1. Review of literature 14 2. Chemotactic experiments on codling-moth larvae 17 III. Geotaxis 19 1. Review of literature 19 2. Geotactic experiments on codling-moth larvae 20 IV. Thigmotaxis 21 1. Review of literature 21 2. Thigmotactic experiments on codling-moth larvae 22 B. -
Mechanisms of Synaptic Plasticity Mediated by Clathrin Adaptor-Protein Complexes 1 and 2 in Mice
Mechanisms of synaptic plasticity mediated by Clathrin Adaptor-protein complexes 1 and 2 in mice Dissertation for the award of the degree “Doctor rerum naturalium” at the Georg-August-University Göttingen within the doctoral program “Molecular Biology of Cells” of the Georg-August University School of Science (GAUSS) Submitted by Ratnakar Mishra Born in Birpur, Bihar, India Göttingen, Germany 2019 1 Members of the Thesis Committee Prof. Dr. Peter Schu Institute for Cellular Biochemistry, (Supervisor and first referee) University Medical Center Göttingen, Germany Dr. Hans Dieter Schmitt Neurobiology, Max Planck Institute (Second referee) for Biophysical Chemistry, Göttingen, Germany Prof. Dr. med. Thomas A. Bayer Division of Molecular Psychiatry, University Medical Center, Göttingen, Germany Additional Members of the Examination Board Prof. Dr. Silvio O. Rizzoli Department of Neuro-and Sensory Physiology, University Medical Center Göttingen, Germany Dr. Roland Dosch Institute of Developmental Biochemistry, University Medical Center Göttingen, Germany Prof. Dr. med. Martin Oppermann Institute of Cellular and Molecular Immunology, University Medical Center, Göttingen, Germany Date of oral examination: 14th may 2019 2 Table of Contents List of abbreviations ................................................................................. 5 Abstract ................................................................................................... 7 Chapter 1: Introduction ............................................................................ -
Sorting Nexin 4 and Amphiphysin 2, a New Partnership Between Endocytosis and Intracellular Trafficking
Research Article 1937 Sorting nexin 4 and amphiphysin 2, a new partnership between endocytosis and intracellular trafficking Corinne Leprince1,*, Erwan Le Scolan1, Brigitte Meunier1, Vincent Fraisier2, Nathalie Brandon1, Jean De Gunzburg1 and Jacques Camonis1 1INSERM U528, 2CNRS UMR144, Institut Curie Section de Recherche, 26 rue d’Ulm, 75248 Paris Cedex 05, France *Author for correspondence (e-mail: [email protected]) Accepted 30 January 2003 Journal of Cell Science 116, 1937-1948 © 2003 The Company of Biologists Ltd doi:10.1242/jcs.00403 Summary Endocytosis is a regulated physiological process by which terminal or full-length SNX4 was able to inhibit transferrin membrane receptors and their extracellular ligands are receptor endocytosis as efficiently as the SH3 domain of internalized. After internalization, they enter the amphiphysin 2. At lower levels of expression, SNX4 endosomal trafficking pathway for sorting and processing. colocalized with transferrin-containing vesicles, some of Amphiphysins consist of a family of proteins conserved which were also positive for amphiphysin 2. These results throughout evolution that are crucial elements of the indicate that SNX4 may be part of the endocytic machinery endocytosis machinery in mammalian cells. They act as or, alternatively, that SNX4 may associate with key adaptors for a series of proteins important for the endocytic elements of endocytosis such as amphiphysin 2 and process, such as dynamin. In order to improve our sequester them when overexpressed. The presence of knowledge of amphiphysin function, we performed a two- amphiphysin 2 on intracellular vesicles and its interplay hybrid screen with the N-terminal part of murine with SNX4, which is likely to take part in intracellular amphiphysin 2 (residues 1-304). -
Ovary Signals for Directional Pollen Tube Growth
Sex Plant Reprod (2001) 14:3–7 © Springer-Verlag 2001 REVIEW M. Herrero Ovary signals for directional pollen tube growth Received: 15 December 2000 / Accepted: 13 June 2001 Abstract In angiosperms, the female gametophyte has a work has focussed on pollen tube growth along the stig- secluded life; it is protected by several concentric layers ma and style, the ovary has been neglected; it has often that envelop each other. The embryo sac is surrounded been assumed that once the pollen tubes arrive at the by the nucellus, which in turn is wrapped by the integu- base of the style fertilisation occurs. However, informa- ments forming the ovule, which is nested in the ovary. tion is converging toward the concept (Herrero 2000) These wrappings are not hermetic, but contain little that the process is far from straightforward, and that in “gates” the pollen tube must traverse on its way towards the ovary, also, an interesting male-female interaction the embryo sac. Information is emerging that shows that occurs. the ovary and ovule provide signals orienting and direct- A close look at the ovary shows that the female game- imng the pollen tube on the right course. There are three tophyte has a secluded life, protected by a number of main bodies of evidence supporting this hypothesis. One concentric layers that consecutively envelop each other. relates to developmental changes in the female tissues Thus, the embryo sac is surrounded by the nucellus, and how they affect pollen tube growth. The second re- which in turn is wrapped by the integuments forming the fers to defective ovule mutants, which induce defective ovule, which is nested in the ovary. -
Regulate Macrophage Phagocytosis Phospholipases D1 and D2
Phospholipases D1 and D2 Coordinately Regulate Macrophage Phagocytosis Shankar S. Iyer, James A. Barton, Sylvain Bourgoin and David J. Kusner This information is current as of September 26, 2021. J Immunol 2004; 173:2615-2623; ; doi: 10.4049/jimmunol.173.4.2615 http://www.jimmunol.org/content/173/4/2615 Downloaded from References This article cites 79 articles, 55 of which you can access for free at: http://www.jimmunol.org/content/173/4/2615.full#ref-list-1 Why The JI? Submit online. http://www.jimmunol.org/ • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average by guest on September 26, 2021 Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2004 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Phospholipases D1 and D2 Coordinately Regulate Macrophage Phagocytosis1 Shankar S. Iyer,* James A. Barton,* Sylvain Bourgoin,§ and David J. Kusner,2*†‡ Phagocytosis is a fundamental feature of the innate immune system, required for antimicrobial defense, resolution of inflamma- tion, and tissue remodeling. Furthermore, phagocytosis is coupled to a diverse range of cytotoxic effector mechanisms, including the respiratory burst, secretion of inflammatory mediators and Ag presentation. -
Chemoattractive Mechanisms in Filamentous Fungi
Send Orders for Reprints to [email protected] 28 The Open Mycology Journal, 2014, 8, (Suppl-1, M2) 28-57 Open Access Chemoattractive Mechanisms in Filamentous Fungi Alexander Lichius1,* and Kathryn M. Lord2 1Institute of Chemical Engineering, Vienna University of Technology, Austria 2School of Biological Sciences, The University of Edinburgh, Scotland, United Kingdom Abstract: Research on cell communication and differentiation in filamentous fungi has provided a number of novel insights into chemoattractive mechanisms in recent years. Still, identification of specific chemoattractant molecules, cognate receptors and downstream signaling pathways is strongly biased towards those involved in mating; probably due to the relative ease of functional genomic comparison to the budding yeast model. The multicellular nature of filamentous fungi, however, preserved a more complex morphology compared to unicellular fungi and revealed chemoattractive mechanisms lost during yeast evolution. Two hallmarks of this higher complexity are the formation of an interconnected colony network and the development of elaborate sexual reproductive organs. Morphogenesis of both structures depends on two different modes of chemoattraction: attraction to self and attraction to nonself. Nonself chemoattraction between genetically distinct mating partners is the basis for sexual reproduction and generally regulated through a bilateral sex- pheromone/cognate-receptor system, widely but not exclusively equivalent to that known from yeasts. In contrast, self- chemoattraction between genetically identical cells is regulated independently of the sex-pheromone/cognate-receptor systems, and does not exist in yeast. Although both chemoattractive modes do share a number of molecular components, we are only beginning to understand how cell morphogenesis is regulated by means of gene expression and targeted protein recruitment during the establishment of self-fusion. -
Integrating Protein Copy Numbers with Interaction Networks to Quantify Stoichiometry in Mammalian Endocytosis
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.29.361196; this version posted October 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Integrating protein copy numbers with interaction networks to quantify stoichiometry in mammalian endocytosis Daisy Duan1, Meretta Hanson1, David O. Holland2, Margaret E Johnson1* 1TC Jenkins Department of Biophysics, Johns Hopkins University, 3400 N Charles St, Baltimore, MD 21218. 2NIH, Bethesda, MD, 20892. *Corresponding Author: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.10.29.361196; this version posted October 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Abstract Proteins that drive processes like clathrin-mediated endocytosis (CME) are expressed at various copy numbers within a cell, from hundreds (e.g. auxilin) to millions (e.g. clathrin). Between cell types with identical genomes, copy numbers further vary significantly both in absolute and relative abundance. These variations contain essential information about each protein’s function, but how significant are these variations and how can they be quantified to infer useful functional behavior? Here, we address this by quantifying the stoichiometry of proteins involved in the CME network. We find robust trends across three cell types in proteins that are sub- vs super-stoichiometric in terms of protein function, network topology (e.g.