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Zootaxa, Grania (Annelida: Clitellata: Enchytraeidae) of the Great Barrier
Zootaxa 2165: 16–38 (2009) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2009 · Magnolia Press ISSN 1175-5334 (online edition) Grania (Annelida: Clitellata: Enchytraeidae) of the Great Barrier Reef, Australia, including four new species and a re-description of Grania trichaeta Jamieson, 1977 PIERRE DE WIT1,3, EMILIA ROTA2 & CHRISTER ERSÉUS1 1Department of Zoology, University of Gothenburg, Box 463, SE-405 30 Göteborg, Sweden 2Department of Environmental Sciences, University of Siena, Via T. Pendola 62, IT-53100 Siena, Italy 3Corresponding author. E-mail: [email protected] Abstract This study describes the fauna of the marine enchytraeid genus Grania at two locations on the Australian Great Barrier Reef: Lizard and Heron Islands. Collections were made from 1979 to 2006, yielding four new species: Grania breviductus sp. n., Grania regina sp. n., Grania homochaeta sp. n. and Grania colorata sp. n.. A re-description of Grania trichaeta Jamieson, 1977 based on new material is also included, along with notes and amendments on G. hyperoadenia Coates, 1990 and G. integra Coates & Stacey, 1997, the two latter being recorded for the first time from eastern Australia. COI barcode sequences were obtained from G. trichaeta and G. colorata and deposited with information on voucher specimens in the Barcode of Life database and GenBank; the mean intraspecific variation is 1.66 % in both species, while the mean interspecific divergence is 25.54 %. There seem to be two phylogeographic elements represented in the Great Barrier Grania fauna; one tropical with phylogenetic affinities to species found in New Caledonia and Hong Kong, and one southern (manifested at the more southerly located Heron Island) with affinities to species found in Southern Australia, Tasmania and Antarctica. -
Divergence of AMP Deaminase in the Ice Worm Mesenchytraeus Solifugus (Annelida, Clitellata, Enchytraeidae)
SAGE-Hindawi Access to Research International Journal of Evolutionary Biology Volume 2009, Article ID 715086, 10 pages doi:10.4061/2009/715086 Research Article Divergence of AMP Deaminase in the Ice Worm Mesenchytraeus solifugus (Annelida, Clitellata, Enchytraeidae) Roberto Marotta,1 Bradley R. Parry,2 and Daniel H. Shain2 1 Department of Biology, University of Milano, via Celoria 26, 20133 Milano, Italy 2 Department of Biology, Rutgers The State University of New Jersey, 315 Penn Street, Science Building, Camden, NJ 08102, USA Correspondence should be addressed to Daniel H. Shain, [email protected] Received 7 April 2009; Accepted 22 May 2009 Recommended by Dan Graur Glacier ice worms, Mesenchytraeus solifugus and related species, are the largest glacially obligate metazoans. As one component of cold temperature adaptation, ice worms maintain atypically high energy levels in an apparent mechanism to offset cold temperature-induced lethargy and death. To explore this observation at a mechanistic level, we considered the putative contribution of 5 adenosine monophosphate deaminase (AMPD), a key regulator of energy metabolism in eukaryotes. We cloned cDNAs encoding ice worm AMPD, generating a fragment encoding 543 amino acids that included a short N-terminal region and complete C-terminal catalytic domain. The predicted ice worm AMPD amino acid sequence displayed conservation with homologues from other mesophilic eukaryotes with notable exceptions. In particular, an ice worm-specific K188E substitution proximal to the AMP binding site likely alters the architecture of the active site and negatively affects the enzyme’s activity. Paradoxically, this would contribute to elevated intracellular ATP levels, which appears to be a signature of cold adapted taxa. -
The Relation of Tidal Height and Sediment Type to the Intertidal Distribution of Marine Oligochaetes in Coos Bay, Oregon
AN ABSTRACT OF THE THESIS OF David Randall Strehiow for the degree of Master of Science in the School of Oceanography presentedon 3 May 1982 Title: The Relation of.Tidal Height and Sediment Type to the Inter- tidal Distributi Redacted for privacy Abstract approved: .J. Gonor The taxonomy of intertidal oligochaetès, and the relationships between oligochaete species distributions, tidal height, and sediment type, were studied in detail for a sand and mud flat in lower Coos Bay, Oregon. Eighteen species, representing four families, were identified. Three species of Enchytraeidae (Marionina vaucheriae, Marionina callianassae, and Marionina gpnori) and one species of Tubificidae (Aktedrilus oregpnensis) are new to science. A preliminary description of a new family, Psamotheriidae, based on Psarrrnotheriuni hastatus n.g. n.sp. is given. Other species present were Marionina vancouverensis, M. sjaelandica, N. subterranea, and N. achaeta (Enchytraeidae); Aktedrilus locyi, Li.mnodriloides monothecus, L. victoriensis, L. vérrucosus, Tubificoides coatesae, and T. pseudogaster (Tubificidae); and Paranais litoralis (Naididae). Individuals of Enchytraeus sp. and Lumbricillus spp. (Enchytraeidae) were found but were not fully mature, and therefore could not be identified to species. Nine of the eighteen species are known oniy from the northeast Pacific littoral zone, indicating the existence of a distinct regthnal oligochaete fauna. Earlier studies of the Enchytraeidae (Coates and Ellis 1981) and Tubificidae (Brinkhurst and Baker 1979) support this conclusion. Distinct oligochaete species assemblages were closely associated with physical habitat types defined by tidal exposure and sediment type. The distributions of species were not correlated with each other or with physical habitat types, however. Tide levels at which large changes in maximum continuous tidal exposure or submergence occur (critical tide levels) are strongly associated with. -
Envall Et Al
Molecular Phylogenetics and Evolution 40 (2006) 570–584 www.elsevier.com/locate/ympev Molecular evidence for the non-monophyletic status of Naidinae (Annelida, Clitellata, TubiWcidae) Ida Envall a,b,c,¤, Mari Källersjö c, Christer Erséus d a Department of Zoology, Stockholm University, SE-106 91 Stockholm, Sweden b Department of Invertebrate Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden c Laboratory of Molecular Systematics, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden d Department of Zoology, Göteborg University, Box 463, SE-405 30 Göteborg, Sweden Received 24 October 2005; revised 9 February 2006; accepted 15 March 2006 Available online 8 May 2006 Abstract Naidinae (former Naididae) is a group of small aquatic clitellate annelids, common worldwide. In this study, we evaluated the phylo- genetic status of Naidinae, and examined the phylogenetic relationships within the group. Sequence data from two mitochondrial genes (12S rDNA and 16S rDNA), and one nuclear gene (18S rDNA), were used. Sequences were obtained from 27 naidine species, 24 species from the other tubiWcid subfamilies, and Wve outgroup taxa. New sequences (in all 108) as well as GenBank data were used. The data were analysed by parsimony and Bayesian inference. The tree topologies emanating from the diVerent analyses are congruent to a great extent. Naidinae is not found to be monophyletic. The naidine genus Pristina appears to be a derived group within a clade consisting of several genera (Ainudrilus, Epirodrilus, Monopylephorus, and Rhyacodrilus) from another tubiWcid subfamily, Rhyacodrilinae. These results dem- onstrate the need for a taxonomic revision: either Ainudrilus, Epirodrilus, Monopylephorus, and Rhyacodrilus should be included within Naidinae, or Pristina should be excluded from this subfamily. -
SOP #: MDNR-WQMS-209 EFFECTIVE DATE: May 31, 2005
MISSOURI DEPARTMENT OF NATURAL RESOURCES AIR AND LAND PROTECTION DIVISION ENVIRONMENTAL SERVICES PROGRAM Standard Operating Procedures SOP #: MDNR-WQMS-209 EFFECTIVE DATE: May 31, 2005 SOP TITLE: Taxonomic Levels for Macroinvertebrate Identifications WRITTEN BY: Randy Sarver, WQMS, ESP APPROVED BY: Earl Pabst, Director, ESP SUMMARY OF REVISIONS: Changes to reflect new taxa and current taxonomy APPLICABILITY: Applies to Water Quality Monitoring Section personnel who perform community level surveys of aquatic macroinvertebrates in wadeable streams of Missouri . DISTRIBUTION: MoDNR Intranet ESP SOP Coordinator RECERTIFICATION RECORD: Date Reviewed Initials Page 1 of 30 MDNR-WQMS-209 Effective Date: 05/31/05 Page 2 of 30 1.0 GENERAL OVERVIEW 1.1 This Standard Operating Procedure (SOP) is designed to be used as a reference by biologists who analyze aquatic macroinvertebrate samples from Missouri. Its purpose is to establish consistent levels of taxonomic resolution among agency, academic and other biologists. The information in this SOP has been established by researching current taxonomic literature. It should assist an experienced aquatic biologist to identify organisms from aquatic surveys to a consistent and reliable level. The criteria used to set the level of taxonomy beyond the genus level are the systematic treatment of the genus by a professional taxonomist and the availability of a published key. 1.2 The consistency in macroinvertebrate identification allowed by this document is important regardless of whether one person is conducting an aquatic survey over a period of time or multiple investigators wish to compare results. It is especially important to provide guidance on the level of taxonomic identification when calculating metrics that depend upon the number of taxa. -
Annelida: Clitellata: Naididae) ⇑ Yingkui Liu A, Steven V
Molecular Phylogenetics and Evolution 112 (2017) 244–257 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multi-locus phylogenetic analysis of the genus Limnodrilus (Annelida: Clitellata: Naididae) ⇑ Yingkui Liu a, Steven V. Fend b, Svante Martinsson a, Xu Luo a, Akifumi Ohtaka c, Christer Erséus a, a Department of Biological and Environmental Sciences, University of Gothenburg, Box 463, SE-405 30 Göteborg, Sweden b 17650 Kilkenny Rd., Los Gatos, CA 95030, USA c Department of Natural Science, Faculty of Education, Hirosaki University, Hirosaki, Aomori 036-8560, Japan article info abstract Article history: Limnodrilus species are annelid worms distributed worldwide in various freshwater sediments. The sys- Received 22 December 2016 tematics of Limnodrilus has chiefly been based on morphology, but the genus has not been subject to any Revised 24 March 2017 closer phylogenetic studies over the past two decades. To reconstruct the evolutionary history of Accepted 20 April 2017 Limnodrilus, and to assess the monophyly of this genus and its systematic position within the subfamily Available online 27 April 2017 Tubificinae (Annelida: Clitellata: Naididae), 45 Limnodrilus specimens, representing 19 species, and 35 other naidid species (representing 24 genera) were sampled. The data consisted of sequences of three Keywords: mitochondrial genes (COI, 12S and 16S rDNA) and four nuclear markers (18S and 28S rDNA, Histone 3, Oligochaetes and ITS). The phylogeny was estimated, using Maximum Likelihood and Bayesian analyses of concate- Clitellates Limnodrilus nated data of seven DNA loci, as well as a multi-locus coalescent-based approach. All analyses strongly Phylogeny suggest that Limnodrilus is monophyletic, but only if the morphospecies L. -
Menemen-‹Zmir)
TurkJZool 28(2004)183-197 ©TÜB‹TAK OligochaetaandAphanoneura(Annelida)Faunaofthe GedizDelta(Menemen-‹zmir) SüleymanBALIK,M.RuflenUSTAO⁄LU,SerayYILDIZ EgeUniversity,FisheriesFaculty,DepartmentofHydrobiology,35100Bornova,‹zmir-TURKEY Received:09.01.2003 Abstract: Thespecimenswerecollectedfrom16stationsbetweenFebruary1998andMay1999withtheaimofseasonally determiningtheOligochaetaandAphanoneurafaunaoftheGedizDelta.Thespecimensobtainedbycollectionofmudsampleswith anEkmangrabandeliminationwithafine500µmsievewerepreservedin4%formaldehydesolution. Atotalof47speciesweredetermined,comprising25speciesfromTubificidae,17speciesfromNaididae,3speciesfrom Enchytraeidaeand2speciesfromAeolosomatidae.Seventeenofthespeciesdeterminedarenewrecordsfortheinlandwaterfauna ofTurkey. KeyWords: Oligochaeta,Aphanoneura,Fauna,GedizDelta,‹zmir. GedizDeltas›’n›n(Menemen-‹zmir)OligochaetaveAphanoneura(Annelida)Faunas› Özet: GedizDeltas›’n›nOligochaetaveAphanoneurafaunas›n›belirlemekamac›yla,fiubat1998-May›s1999tarihleriaras›nda,16 istasyondanmevsimselörneklemeleryap›lm›flt›r.‹stasyonlardanal›nançamurörneklerinin500µmgözaç›kl›¤›ndakielekten geçirilmesiyleeldeedilenörnekler%4’lükformoldetespitedilmifltir. Örneklerinde¤erlendirilmesisonucunda,Tubificidaefamilyas›ndan25takson,Naididaefamilyas›ndan17takson,Enchytraeidae familyas›ndan3taksonveAeolosomatidaefamilyas›ndan2taksonolmaküzeretoplam47taksonsaptanm›flolup,bunlardan17’si Türkiyefaunas›içinilkdefabildirilmektedir. AnahtarSözcükler: Oligochaeta,Aphanoneura,Fauna,GedizDeltas›,‹zmir. Introduction faunaoftheGedizriversysteminastudyofTurkey’s -
Myxozoa: Myxosporea) from Marine Tubificid Oligochaetes, with a Discussion on the Validity of the Tetraspora and the Endocapsa As Actinospores Collective Group Names
Description of new types of sphaeractinomyxon actinospores (Myxozoa: Myxosporea) from marine tubificid oligochaetes, with a discussion on the validity of the tetraspora and the endocapsa as actinospores collective group names Luis F. Rangel • Ricardo Castro • Sónia Rocha • Gábor Cech • Graça Casal • Carlos Azevedo • Csaba Székely • Francisca Cavaleiro • Maria J. Santos L. F. Rangel (✉) • M. J. Santos Laboratory of Animal Pathology, Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre, s/n, Edifício FC4, 4169-007 Porto, Portugal e-mail: [email protected] L. F. Rangel (✉) • R. Castro • S. Rocha • G. Casal • C. Azevedo • F. Cavaleiro • M. J. Santos Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Rua dos Bragas 289, 4050-123 Porto, Portugal S. Rocha • C. Azevedo Laboratory of Cell Biology, Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Rua Jorge Viterbo Ferreira no. 228, 4050-313 Porto, Portugal Gábor Cech • Csaba Székely Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, 1143 Budapest, Hungary G. Casal Department of Sciences, Institute University of Health Sciences, CESPU, Rua Central da Gandra no. 1317, 4585-116 Gandra, Portugal C. Azevedo Zoology Department, College of Sciences, King Saud University, Riyadh 11451, Saudi Arabia Abstract Ten new types of sphaeractinomyxon actinospores are morphologically and molecularly described from the coelomic cavity of two marine oligochaete hosts, Limnodriloides agnes Hrabě, 1967 and Tubificoides pseudogaster (Dahl, 1960), from Aveiro 1 estuary, Portugal. The smallest sphaeractinomyxon type measured 17 µm (length) × 19 µm (width) × 19 µm (apical diameter), whereas the largest type measured 61 µm × 76 µm × 80 µm. -
(Clitellata: Annelida) Adrian Pinder TRIN Taxonomic Guide 2
Tools for identifying selected Australian aquatic oligochaetes (Clitellata: Annelida) Adrian Pinder TRIN Taxonomic Guide 2. 1 Tools for identifying selected Australian aquatic oligochaetes (Clitellata : Annelida) Adrian Pinder Science Division Department of Environment and Conservation PO Box 51, Wanneroo 6946 Western Australia Taxonomy Research and Information Network (TRIN) TRIN Taxonomic Guide 2. Presented at the Taxonomic Workshop held at La Trobe University, Albury-Wodonga Campus, Wodonga, February 10-11 th 2009. 2 Tools for identifying selected Australian aquatic oligochaetes (Clitellata: Annelida) Adrian Pinder Science Division, Department of Environment and Conservation, P.O. Box 51, Wanneroo, 6946, Western Australia. CONTENTS INTRODUCTION...................................................................................................................3 CLASSIFICATION.................................................................................................................5 EXPLANATION OF CHARACTERS ......................................................................................6 Fixation and preservation ................................................................................. 14 Examination of specimens ............................................................................... 14 Recipe for Grenacher’s borax carmine ........................................................... 15 Examination of the genitalia ............................................................................. 15 KEY TO ANNELID -
The Values of Soil Animals for Conservation Biology
Available online at www.sciencedirecl.com --" EUROPEAN JOURNAL Of -.;- ScienceDirect SOll BIOLOGY ELSEVIER European Journal of Soil Biology 42 (2006) S23-838 http://france.elsevier.comldirectlejsobi Original article The values of sail animaIs for conservation biology a b c b T. Decaëns ,*, II Jiménez , C. Gioia , G.J. Measeyb, P. Lavelle •Laboratoire d'écologie-ECOD/V, UPRES EA /293, université de Rouen, 76821 Mt Saint Aignan cedex, France b Laboratoire d'écologie des sols tropicaux, lRD, 32, Avenue Henri-Varagnat, 93143 Bondy cedex, France C Bureau d'élude AL/SE. 228, ZAC de la Forge-Seret, 76520 Boos, France Available online 21 July 2006 Abstract It has taken time for the international community to accept the idea of biodiversity values, a concept which had previously been restricted to the limited aesthetic and touristic aspects ofwildlife. This situation changed following the International Convention on Biodiversity in Rio de Janeiro (1992), which focussed on "the forgotten environmental problem" ofbiodiversity erosion and made the first clear reference to the values of living species. Biodiversity values refer to direct or indirect, economic or non-economic interest, a given species or ecosystem may represent for human populations. These values are generally split into intrinsic and instrumental (use) values, the last category itself being divided into direct and indirect economic values. Obviously, each of these values cames different weights, and cannot be considered as being weighted equally in terms of justification for species or ecosystem conservation. Soil is probably one ofthe most species-rich habitats of terrestrial ecosystems, especially if the defmition is extended to related habitats like vertebrate faeces, decaying wood, and humus ofhollow trees (i.e. -
Fauna Europaea: Annelida - Terrestrial Oligochaeta (Enchytraeidae and Megadrili), Aphanoneura and Polychaeta
Biodiversity Data Journal 3: e5737 doi: 10.3897/BDJ.3.e5737 Data Paper Fauna Europaea: Annelida - Terrestrial Oligochaeta (Enchytraeidae and Megadrili), Aphanoneura and Polychaeta Emilia Rota‡, Yde de Jong §,| ‡ University of Siena, Siena, Italy § University of Amsterdam - Faculty of Science, Amsterdam, Netherlands | Museum für Naturkunde, Berlin, Germany Corresponding author: Emilia Rota ([email protected]), Yde de Jong ([email protected]) Academic editor: Christos Arvanitidis Received: 26 Jul 2015 | Accepted: 07 Sep 2015 | Published: 11 Sep 2015 Citation: Rota E, de Jong Y (2015) Fauna Europaea: Annelida - Terrestrial Oligochaeta (Enchytraeidae and Megadrili), Aphanoneura and Polychaeta. Biodiversity Data Journal 3: e5737. doi: 10.3897/BDJ.3.e5737 Abstract Fauna Europaea provides a public web-service with an index of scientific names (including important synonyms) of all living European land and freshwater animals, their geographical distribution at country level (up to the Urals, excluding the Caucasus region), and some additional information. The Fauna Europaea project covers about 230,000 taxonomic names, including 130,000 accepted species and 14,000 accepted subspecies, which is much more than the originally projected number of 100,000 species. This represents a huge effort by more than 400 contributing specialists throughout Europe and is a unique (standard) reference suitable for many users in science, government, industry, nature conservation and education. This paper provides updated information on the taxonomic composition and distribution of the Annelida - terrestrial Oligochaeta (Megadrili and Enchytraeidae), Aphanoneura and Polychaeta, recorded in Europe. Data on 18 families, 11 autochthonous and 7 allochthonous, represented in our continent by a total of 800 species, are reviewed, beginning from their distinctness, phylogenetic status, diversity and global distribution, and following with major recent developments in taxonomic and faunistic research in Europe. -
Marine Tubificidae (Oligochaeta) from Hokkaido, Northern Japan, with Descriptions of Two New Species
Species Diversity, 1996, 1, 55 70 Marine Tubificidae (Oligochaeta) from Hokkaido, Northern Japan, with Descriptions of Two New Species Yoshikazu Takashima and Shunsuke F. Mawatari Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo 060, Japan (Received: 1 February 1996/Accepted: 6 June 1996) Eight species of marine Tubificidae, including two new species and four first records from Japan, are reported from Hokkaido. Nootkadrilus crassisetosus sp. n. is distinguished from N. verutus Baker, 1982 in having penial setae of equal length. Limnodriloides ezoensis sp. n. differs from L. victoriensis Brinkhurst and Baker, 1979 by having an oesophagus without diverticulae. Three species, Rhizodrilus pacificus (Brinkhurst and Baker, 1979), Aktedrilus knoellneri Erseus, 1987 and Tubificoides pseudogaster (Dahl, 1960), are redescribed. Key Words: Oligochaeta, marine Tubificidae, northern Japan, taxonomy, biogeography. Introduction Aquatic oligochaetes were formerly considered a predominantly lirnnic group with a few marine representatives. It has become necessary to change this view, however, as over the last two decades marine surveys have revealed more marine oligochaetes. In the Tubificidae, for example, the current number of marine species is over 400 and exceeds that of freshwater species, though only 40 marine species were recorded twenty five years ago (cf. Brinkhurst and Jamieson 1971). In the eastern part of Asia, about 60 species of marine tubificids have been reported. Erseus (1984, 1990a, 1992) intensively studied the fauna of Southern China. Erseus et al. (1990) described material from northern China. Finogenova (1982a, b, 1985) and Finogenova and Shurova (1980) studied the tubificids of the Far East. In Japan, the only truly marine species previously known are: Rhizodrilus pacificus (Brinkhurst and Baker, 1979) from Hokkaido, northern Japan (Baker and Brinkhurst 1981); Tubificoides imajimai Brinkhurst, 1985 from central Japan (Brinkhurst 1985); and Tubificoides brevicoleus Brinkhurst, 1983 also from Hokkaido (Ohtaka 1987).