Bio-Produced Acetic Acid: a Review Chemical Engineering
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Acetogen Communities in the Gut of Herbivores and Their Potential Role in Syngas Fermentation
fermentation Article Acetogen Communities in the Gut of Herbivores and Their Potential Role in Syngas Fermentation Chunlei Yang Institute of Dairy Science, MoE Key Laboratory of Molecular Animal Nutrition, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; [email protected] Received: 2 May 2018; Accepted: 4 June 2018; Published: 7 June 2018 Abstract: To better understand the effects of host selection on gut acetogens and their potential role in syngas fermentation, the composition and hydrogenotrophic features of acetogen populations in cow and sheep rumens, rabbit ceca, and horse feces were studied. The acetogens detected in horses and rabbits were more phylogenetically diverse than those in cows and sheep, suggesting that the host species plays an important role in shaping gut acetogen populations. Acetogen enrichments from these animals presented good capacities to use hydrogen, with acetate as the major end product. Minor propionate, butyrate, and isovalerate were also produced. During 48 h of incubation, acetogen enrichments from horse consumed 4.75 moles of H2 to every 1 mole of acetate—significantly lower than rabbits, cows, and sheep (5.17, 5.53, and 5.23 moles, respectively) (p < 0.05)—and produced significantly more butyrate (p < 0.05). Enrichments from cows and sheep produced significantly higher amounts of propionate when compared to rabbits or horses (p < 0.05); enrichments from sheep produced the highest amounts of isovalerate (p < 0.05). These short chain fatty acids are important precursors for the synthesis of biofuel products, suggesting that gut contents of herbivores may be promising sources for harvesting functional acetogens for biofuel production. -
Characterization of an Adapted Microbial Population to the Bioconversion of Carbon Monoxide Into Butanol Using Next-Generation Sequencing Technology
Characterization of an adapted microbial population to the bioconversion of carbon monoxide into butanol using next-generation sequencing technology Guillaume Bruant Research officer, Bioengineering group Energy, Mining, Environment - National Research Council Canada Pacific Rim Summit on Industrial Biotechnology and Bioenergy December 8 -11, 2013 Butanol from residue (dry): syngas route biomass → gasification → syngas → catalysis → synfuels (CO, H2, CO2, CH4) (alcohols…) Biocatalysis vs Chemical catalysis potential for higher product specificity may be less problematic when impurities present less energy intensive (low pressure and temperature) Anaerobic undefined mixed culture vs bacterial pure culture mesophilic anaerobic sludge treating agricultural wastes (Lassonde Inc, Rougemont, QC, Canada) PRS 2013 - 2 Experimental design CO Alcohols Serum bottles incubated at Next Generation RDP Pyrosequencing mesophilic temperature Sequencing (NGS) pipeline 35°C for 2 months Ion PGMTM sequencer http://pyro.cme.msu.edu/ sequences filtered CO continuously supplied Monitoring of bacterial and to the gas phase archaeal populations RDP classifier atmosphere of 100% CO, http://rdp.cme.msu.edu/ 1 atm 16S rRNA genes Ion 314TM chip classifier VFAs & alcohol production bootstrap confidence cutoff low level of butanol of 50 % Samples taken after 1 and 2 months total genomic DNA extracted, purified, concentrated PRS 2013 - 3 NGS: bacterial results Bacterial population - Phylum level 100% 80% Other Chloroflexi 60% Synergistetes % -
The Carbon-Isotope Record of the Sub-Seafloor Biosphere
geosciences Review The Carbon-Isotope Record of the Sub-Seafloor Biosphere Patrick Meister 1,* and Carolina Reyes 2 1 Department of Geodynamics and Sedimentology, University of Vienna, Althanstr. 14, 1090 Vienna, Austria 2 Department of Environmental Geosciences, University of Vienna, Althanstr. 14, 1090 Vienna, Austria; [email protected] * Correspondence: [email protected] Received: 13 November 2019; Accepted: 29 November 2019; Published: 5 December 2019 Abstract: Sub-seafloor microbial environments exhibit large carbon-isotope fractionation effects as a result of microbial enzymatic reactions. Isotopically light, dissolved inorganic carbon (DIC) derived from organic carbon is commonly released into the interstitial water due to microbial dissimilatory processes prevailing in the sub-surface biosphere. Much stronger carbon-isotope fractionation occurs, however, during methanogenesis, whereby methane is depleted in 13C and, by mass balance, DIC is enriched in 13C, such that isotopic distributions are predominantly influenced by microbial metabolisms involving methane. Methane metabolisms are essentially mediated through a single enzymatic pathway in both Archaea and Bacteria, the Wood–Ljungdahl (WL) pathway, but it remains unclear where in the pathway carbon-isotope fractionation occurs. While it is generally assumed that fractionation arises from kinetic effects of enzymatic reactions, it has recently been suggested that partial carbon-isotope equilibration occurs within the pathway of anaerobic methane oxidation. Equilibrium fractionation might also occur during methanogenesis, as the isotopic difference between DIC and methane is commonly on the order of 75%, which is near the thermodynamic equilibrium. The isotopic signature in DIC and methane highly varies in marine porewaters, reflecting the distribution of different microbial metabolisms contributing to DIC. -
Fermentation of Triacetin and Glycerol by Acetobacterium Sp. : No Energy Is Conserved by Acetate Excretion
Fermentation of triacetin and glycerol by Acetobacterium sp. No energy is conserved by acetate excretion* R. Emde and B. Schink** Fachbereich Biologie-Mikrobiologie, Philipps-Universitfit, D-3550 Marburg, Federal Republic of Germany Abstract. Two strains of homoacetogenic bacteria similar residue with coenzyme A to acetyl CoA (Wood et al. 1986; to Acetobacterium carbinolicum were enriched and isolated Fuchs 1986). However, the way how energy is conserved from freshwater and marine sediment samples with triacctin during autotrophic growth is not yet understood. One ATP (glycerol triacetylester) as sole carbon and energy source. can be synthetized by acetate kinase, however, one ATP has Also the type strains of A. carbinolicum and A. woodii were also to be spent in the formyl tetrahydrofolate synthetase found to be able to grow with triacetin, and to convert reaction (Fuchs 1986). The reduction of CO2 to CO with H2 it nearly exclusively to acetate. The triacetin-hydrolyzing as electron donor requires energy as well which is provided enzyme was inducible, and was localized in the cytoplasmic by the membrane proton motive force (Diekert et al. 1986). fraction of both species at an activity of 0.21-0.26 U mg It has been suggested that the methylene tetrahydrofolate protein -1. During fermentation of glycerol, varying reductase reaction is coupled to an electron transport reac- amounts of 1,3-propranediol were produced which could be tion. This reaction should establish a proton motive force kept at a minimum in a glycerol-limited chemostat. Growth sufficient to allow an overall energy conservation of 0.5 - 1 yields in batch and continuous culture experiments varied ATP per acetate produced (Fuchs 1986). -
Genome-Scale Analysis of Acetobacterium Bakii Reveals the Cold Adaptation of Psychrotolerant Acetogens by Post-Transcriptional Regulation
Downloaded from rnajournal.cshlp.org on September 23, 2021 - Published by Cold Spring Harbor Laboratory Press Shin et al. 1 Genome-scale analysis of Acetobacterium bakii reveals the cold adaptation of 2 psychrotolerant acetogens by post-transcriptional regulation 3 4 Jongoh Shin1, Yoseb Song1, Sangrak Jin1, Jung-Kul Lee2, Dong Rip Kim3, Sun Chang Kim1,4, 5 Suhyung Cho1*, and Byung-Kwan Cho1,4* 6 7 1Department of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of 8 Science and Technology, Daejeon 34141, Republic of Korea 9 2Department of Chemical Engineering, Konkuk University, Seoul 05029, Republic of Korea 10 3Department of Mechanical Engineering, Hanyang University, Seoul 04763, Republic of Korea 11 4Intelligent Synthetic Biology Center, Daejeon 34141, Republic of Korea 12 13 *Correspondence and requests for materials should be addressed to S.C. ([email protected]) 14 and B.-K.C. ([email protected]) 15 16 Running title: Cold adaptation of psychrotolerant acetogen 17 18 Keywords: Post-transcriptional regulation, Psychrotolerant acetogen, Acetobacterium bakii, 19 Cold-adaptive acetogenesis 20 1 Downloaded from rnajournal.cshlp.org on September 23, 2021 - Published by Cold Spring Harbor Laboratory Press Shin et al. 1 ABSTRACT 2 Acetogens synthesize acetyl-CoA via CO2 or CO fixation, producing organic compounds. 3 Despite their ecological and industrial importance, their transcriptional and post-transcriptional 4 regulation has not been systematically studied. With completion of the genome sequence of 5 Acetobacterium bakii (4.28-Mb), we measured changes in the transcriptome of this 6 psychrotolerant acetogen in response to temperature variations under autotrophic and 7 heterotrophic growth conditions. -
Acetogenesis in the Energy-Starved Deep Biosphere – a Paradox?
HYPOTHESIS AND THEORY ARTICLE published: 13 January 2012 doi: 10.3389/fmicb.2011.00284 Acetogenesis in the energy-starved deep biosphere – a paradox? Mark Alexander Lever* Department of Bioscience, Center for Geomicrobiology, Aarhus University, Aarhus, Denmark Edited by: Under anoxic conditions in sediments, acetogens are often thought to be outcompeted Andreas Teske, University of North by microorganisms performing energetically more favorable metabolic pathways, such as Carolina at Chapel Hill, USA sulfate reduction or methanogenesis. Recent evidence from deep subseafloor sediments Reviewed by: Matthew Schrenk, East Carolina suggesting acetogenesis in the presence of sulfate reduction and methanogenesis has University, USA called this notion into question, however. Here I argue that acetogens can successfully Aharon Oren, The Hebrew University coexist with sulfate reducers and methanogens for multiple reasons. These include (1) of Jerusalem, Israel substantial energy yields from most acetogenesis reactions across the wide range of *Correspondence: conditions encountered in the subseafloor, (2) wide substrate spectra that enable niche Mark Alexander Lever , Department of Bioscience, Center for differentiation by use of different substrates and/or pooling of energy from a broad range Geomicrobiology, Aarhus University, of energy substrates, (3) reduced energetic cost of biosynthesis among acetogens due Ny Munkegade 114, bng 1535-1540, to use of the reductive acetyl CoA pathway for both energy production and biosynthesis DK-8000 Århus C, Denmark. coupled with the ability to use many organic precursors to produce the key intermediate e-mail: [email protected] acetyl CoA. This leads to the general conclusion that, beside Gibbs free energy yields, variables such as metabolic strategy and energetic cost of biosynthesis need to be taken into account to understand microbial survival in the energy-depleted deep biosphere. -
Biosolids Technology Fact Sheet, Multi-Stage Anaerobic Digestion
Biosolids Technology Fact Sheet Multi-Stage Anaerobic Digestion DESCRIPTION the organisms that perform the methane forma- tion step (the methanogenic bacteria). The Anaerobic digestion is a naturally occurring bio- acidogenic bacteria are also less sensitive than logical process in which large numbers of the methanogenic bacteria to changes in organic anaerobic bacteria convert organic matter into strength and composition in the incoming feed methane and carbon dioxide (a mixture called stream. Therefore, although many wastewater biogas) in the absence of air. It is a widely used treatment plants have traditionally performed biological process for treating wastewater solids. anaerobic digestion processes in a single tank (in This process stabilizes the organic matter in a process called single-stage anaerobic digestion) wastewater solids, reduces pathogens and odors, at a constant temperature, some facilities have and reduces the total solids/sludge quantity by separated the process into multiple stages, by converting part of the volatile solids (VS) frac- physically separating the stages or by controlling tion to biogas. Anaerobic digestion results in a the process to separate the stages in time, or product that contains stabilized solids, as well as both. This approach allows the facilities to opti- some available forms of nutrients such as am- mize the various stages of the anaerobic monia-nitrogen. digestion process to meet their needs. The process of anaerobic digestion can be divided The standard multi-stage anaerobic digestion into three separate steps, each of which is per- system is a two-stage acid/gas (AG)-phased formed by a different group of microorganisms: system, in which the acid-forming steps (hy- • Hydrolysis, during which the proteins, cellu- drolysis and volatile acid fermentation) are lose, lipids, and other complex organics are physically separated from the gas-forming step broken down into smaller molecules and be- (methane formation) by being conducted in sepa- come soluble by utilizing water to split the rate digestion tanks. -
Acetogenesis and the Wood–Ljungdahl Pathway of CO2 Fixation
Biochimica et Biophysica Acta 1784 (2008) 1873–1898 Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbapap Review Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation Stephen W. Ragsdale ⁎, Elizabeth Pierce Department of Biological Chemistry, MSRB III, 5301, 1150 W. Medical Center Drive, University of Michigan, Ann Arbor, MI 48109-0606, USA article info abstract Article history: Conceptually, the simplest way to synthesize an organic molecule is to construct it one carbon at a time. The Received 2 July 2008 Wood–Ljungdahl pathway of CO2 fixation involves this type of stepwise process. The biochemical events that Received in revised form 12 August 2008 underlie the condensation of two one-carbon units to form the two-carbon compound, acetate, have Accepted 13 August 2008 intrigued chemists, biochemists, and microbiologists for many decades. We begin this review with a Available online 27 August 2008 description of the biology of acetogenesis. Then, we provide a short history of the important discoveries that fi Keywords: have led to the identi cation of the key components and steps of this usual mechanism of CO and CO2 fi fl Acetogenesis xation. In this historical perspective, we have included re ections that hopefully will sketch the landscape Nickel of the controversies, hypotheses, and opinions that led to the key experiments and discoveries. We then Iron–sulfur describe the properties of the genes and enzymes involved in the pathway and conclude with a section Cobalamin describing some major questions that remain unanswered. Methanogenesis © 2008 Elsevier B.V. All rights reserved. -
Oxidation of Primary Aliphatic Alcohols by Acetobacterium Carbinolicum Sp
Archives of Arch Microbiol (1984) 140:147-152 Microbiology Springer-Verlag 1984 Oxidation of primary aliphatic alcohols by Acetobacterium carbinolicum sp. nov., a homoacetogenic anaerobe Barbara Eichler and Bernhard Schink Fakult/it f/Jr Biologic, Universit/it Konstanz, Postfach 5560, D-7750 Konstanz, Federal Republic of Germany Abstract. Four strains of new homoacetogenic bacteria were absence of sulfate to acetate and propionate using carbon enriched and isolated from freshwater sediments and sludge dioxide as electron acceptor (Laanbroek et al. 1982). A with ethanol, propanol, 1,2-propanediol, or 1,2-butanediol similar fermentation pattern was reported for an unidenti- as substrates. All strains were Gram-positive nonsporeform- fied anaerobic bacterium (Samain et al. 1982) and for ing rods and grew well in carbonate-buffered defined media Pelobacter propionicus (Schink i 984 a). under obligately anaerobic conditions. Optimal growth occurred at 27 ~C around pH 7.0. H2/CO2, primary aliphatic Clostridium aceticum oxidizes ethanol to acetate and uses alcohols C1- C5, glucose, fructose, lactate, pyruvate, ethyl- carbon dioxide as electron acceptor to form further acetate ene glycol, 1,2-propanediol, 2,3-butanediol, acetoin, glyc- (Wieringa 1940; Braun et al. 1981), according to the equa- erol, and methyl groups ofmethoxylated benzoate derivates tion: and betaine were fermented to acetate or, in case of primary 2CH3CH2OH + 2HCO~ 3CH3COO- + H + + 2H20. alcohols C3-C5 and 1,2-propanediol, to acetate and the respective fatty acid. In coculture with methanogens In the present study, a new anaerobic bacterium physiologi- methane was formed, probably due to interspecies hydrogen cally similar to C. aceticum is described which ferments transfer. -
Selective Enhancement of Autotrophic Acetate Production with Genetically Modified Acetobacterium Woodii
Journal of Biotechnology 178 (2014) 67–72 Contents lists available at ScienceDirect Journal of Biotechnology j ournal homepage: www.elsevier.com/locate/jbiotec Selective enhancement of autotrophic acetate production with genetically modified Acetobacterium woodii a,∗,1 b b a Melanie Straub , Martin Demler , Dirk Weuster-Botz , Peter Dürre a Institut für Mikrobiologie und Biotechnologie, Universität Ulm, Albert-Einstein-Allee 11, D-89081 Ulm, Germany b Lehrstuhl für Bioverfahrenstechnik, Technische Universität München, Boltzmannstr. 15, D-85748 Garching, Germany a r a t i b s c t l e i n f o r a c t Article history: Great interest has emerged in the recent past towards the potential of autotrophic acetogenic bacte- Received 13 December 2013 ria for the sustainable production of fuels and chemicals. This group of microorganisms possesses an Received in revised form 21 February 2014 ancient pathway for the fixation of carbon dioxide in the presence of hydrogen, making them highly Accepted 1 March 2014 attractive for the utilization of gas mixtures as a cheap and abundant carbon and energy source. As Available online 15 March 2014 more and more genome sequence data of acetogens becomes available, the genetic tools are being developed concomitantly. Here, we demonstrate for the first time the genetic modification of the well- Keywords: characterized acetogen Acetobacterium woodii. This microorganism selectively produces acetate under Acetate autotrophic conditions, but seems to be limited at high acetate concentrations. To increase the carbon Acetobacterium woodii Autotrophic flow through the Wood–Ljungdahl pathway and therefore increase the efficiency of CO2 fixation, genes of Genetic modification enzyme groups of this pathway were selectively overexpressed (the four THF-dependent enzymes for the CO2 + H2 processing of formate as well as phosphotransacetylase and acetate kinase to enhance an ATP-generation step). -
Aquatic Microbial Ecology 79:177
Vol. 79: 177–195, 2017 AQUATIC MICROBIAL ECOLOGY Published online June 12 https://doi.org/10.3354/ame01826 Aquat Microb Ecol Contribution to AME Special 6 ‘SAME 14: progress and perspectives in aquatic microbial ecology’ OPENPEN ACCESSCCESS REVIEW Microbial community assembly in marine sediments Caitlin Petro**, Piotr Starnawski**, Andreas Schramm*, Kasper U. Kjeldsen Section for Microbiology and Center for Geomicrobiology, Department of Bioscience, Aarhus University, 8000 Aarhus C, Denmark ABSTRACT: Marine sediments are densely populated by diverse communities of archaea and bacteria, with intact cells detected kilometers below the seafloor. Analyses of microbial diversity in these unique environments have identified several dominant taxa that comprise a significant portion of the community in geographically and environmentally disparate locations. While the distributions of these populations are well documented, there is significantly less information describing the means by which such specialized communities assemble within the sediment col- umn. Here, we review known patterns of subsurface microbial community composition and per- form a meta-analysis of publicly available 16S rRNA gene datasets collected from 9 locations at depths from 1 cm to >2 km below the surface. All data are discussed in relation to the 4 major pro- cesses of microbial community assembly: diversification, dispersal, selection, and drift. Microbial diversity in the subsurface decreases with depth on a global scale. The transition from the seafloor to the deep subsurface biosphere is marked by a filtering of populations from the surface that leaves only a subset of taxa to populate the deeper sediment zones, indicating that selection is a main mechanism of community assembly. The physiological underpinnings for the success of these persisting taxa are largely unknown, as the majority of them lack cultured representatives. -
Acetogenesis from H2 Plus CO2 and Nitrogen Fixation by an Endosymbiotic Spirochete of a Termite-Gut Cellulolytic Protist
Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist Moriya Ohkumaa,b,1, Satoko Nodaa,c, Satoshi Hattorid, Toshiya Iidaa, Masahiro Yukib, David Starnsa,e, Jun-ichi Inouea, Alistair C. Darbye, and Yuichi Hongoha,f aJapan Collection of Microorganisms/Microbe Division, RIKEN BioResource Center, and bBiomass Research Platform Team, RIKEN Biomass Engineering Program Cooperation Division, RIKEN Center for Sustainable Resource Science, Ibaraki 305-0074, Japan; cInterdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi 400-8511, Japan; dDepartment of Food, Life, and Environmental Sciences, Yamagata University, Yamagata 997-8555, Japan; eInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom; and fDepartment of Biological Sciences, Tokyo Institute of Technology, Tokyo 152-8550, Japan Edited by Patrick J. Keeling, University of British Columbia, Vancouver, Canada, and accepted by the Editorial Board April 16, 2015 (received for review December 15, 2014) Symbiotic associations of cellulolytic eukaryotic protists and di- cellulose digestion. The protists phagocytose ingested wood verse bacteria are common in the gut microbial communities of particles and almost completely decompose and ferment the termites. Besides cellulose degradation by the gut protists, re- cellulose to produce acetate, H2, and CO2 (6, 8). The host ter- ductive acetogenesis from H2 plus CO2 and nitrogen fixation by mite uses the produced acetate as a major carbon and energy ’ gut bacteria play crucial roles in the host termites nutrition by source. The produced H2 is a key metabolic intermediate that contributing to the energy demand of termites and supplying nitro- fuels many bacteria in the gut (9).