The Distribution of Calanoid Copepods Off
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Copepod Distribution and Production in a Mid-Atlantic Ridge Archipelago
Anais da Academia Brasileira de Ciências (2014) 86(4): 1719-1733 (Annals of the Brazilian Academy of Sciences) Printed version ISSN 0001-3765 / Online version ISSN 1678-2690 http://dx.doi.org/10.1590/0001-3765201420130395 www.scielo.br/aabc Copepod distribution and production in a Mid-Atlantic Ridge archipelago PEDRO A.M.C. MELO1, MAURO DE MELO JÚNIOR2, SILVIO J. DE MACÊDO1, MOACYR ARAUJO1 and SIGRID NEUMANN-LEITÃO1 1Universidade Federal de Pernambuco, Departamento de Oceanografia, Av. Arquitetura, s/n, Cidade Universitária, 50670-901 Recife, PE, Brasil 2Universidade Federal Rural de Pernambuco, Unidade Acadêmica de Serra Talhada, Fazenda Saco, s/n, Zona Rural, 56903-970 Serra Talhada, PE, Brasil Manuscript received on October 3, 2013; accepted for publication on March 11, 2014 ABSTRACT The Saint Peter and Saint Paul Archipelago (SPSPA) are located close to the Equator in the Atlantic Ocean. The aim of this study was to assess the spatial variations in the copepod community abundance, and the biomass and production patterns of the three most abundant calanoid species in the SPSPA. Plankton samples were collected with a 300 µm mesh size net along four transects (north, east, south and west of the SPSPA), with four stations plotted in each transect. All transects exhibited a tendency toward a decrease in copepod density with increasing distance from the SPSPA, statistically proved in the North. Density varied from 3.33 to 182.18 ind.m-3, and differences were also found between the first perimeter (first circular distance band) and the others. The total biomass varied from 15.25 to 524.50 10-3 mg C m-3 and production from 1.19 to 22.04 10-3 mg C m-3d-1. -
A Systematic and Experimental Analysis of Their Genes, Genomes, Mrnas and Proteins; and Perspective to Next Generation Sequencing
Crustaceana 92 (10) 1169-1205 CRUSTACEAN VITELLOGENIN: A SYSTEMATIC AND EXPERIMENTAL ANALYSIS OF THEIR GENES, GENOMES, MRNAS AND PROTEINS; AND PERSPECTIVE TO NEXT GENERATION SEQUENCING BY STEPHANIE JIMENEZ-GUTIERREZ1), CRISTIAN E. CADENA-CABALLERO2), CARLOS BARRIOS-HERNANDEZ3), RAUL PEREZ-GONZALEZ1), FRANCISCO MARTINEZ-PEREZ2,3) and LAURA R. JIMENEZ-GUTIERREZ1,5) 1) Sea Science Faculty, Sinaloa Autonomous University, Mazatlan, Sinaloa, 82000, Mexico 2) Coelomate Genomic Laboratory, Microbiology and Genetics Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 3) Advanced Computing and a Large Scale Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 4) Catedra-CONACYT, National Council for Science and Technology, CDMX, 03940, Mexico ABSTRACT Crustacean vitellogenesis is a process that involves Vitellin, produced via endoproteolysis of its precursor, which is designated as Vitellogenin (Vtg). The Vtg gene, mRNA and protein regulation involve several environmental factors and physiological processes, including gonadal maturation and moult stages, among others. Once the Vtg gene, mRNAs and protein are obtained, it is possible to establish the relationship between the elements that participate in their regulation, which could either be species-specific, or tissue-specific. This work is a systematic analysis that compares the similarities and differences of Vtg genes, mRNA and Vtg between the crustacean species reported in databases with respect to that obtained from the transcriptome of Callinectes arcuatus, C. toxotes, Penaeus stylirostris and P. vannamei obtained with MiSeq sequencing technology from Illumina. Those analyses confirm that the Vtg obtained from selected species will serve to understand the process of vitellogenesis in crustaceans that is important for fisheries and aquaculture. RESUMEN La vitelogénesis de los crustáceos es un proceso que involucra la vitelina, producida a través de la endoproteólisis de su precursor llamado Vitelogenina (Vtg). -
Ocean Deoxygenation and Copepods: Coping with Oxygen Minimum Zone Variability
Biogeosciences, 17, 2315–2339, 2020 https://doi.org/10.5194/bg-17-2315-2020 © Author(s) 2020. This work is distributed under the Creative Commons Attribution 4.0 License. Ocean deoxygenation and copepods: coping with oxygen minimum zone variability Karen F. Wishner1, Brad Seibel2, and Dawn Outram1 1Graduate School of Oceanography, University of Rhode Island, Narragansett, RI 02882, USA 2College of Marine Science, University of South Florida, St. Petersburg, FL 33701, USA Correspondence: Karen F. Wishner ([email protected]) Received: 27 September 2019 – Discussion started: 28 October 2019 Revised: 31 March 2020 – Accepted: 2 April 2020 – Published: 24 April 2020 Abstract. Increasing deoxygenation (loss of oxygen) of compression concept). These distribution depths changed by the ocean, including expansion of oxygen minimum zones tens to hundreds of meters depending on the species, oxygen (OMZs), is a potentially important consequence of global profile, and phenomenon. For example, at the lower oxycline, warming. We examined present-day variability of vertical the depth of maximum abundance for Lucicutia hulsemannae distributions of 23 calanoid copepod species in the East- shifted from ∼ 600 to ∼ 800 m, and the depth of diapause for ern Tropical North Pacific (ETNP) living in locations with Eucalanus inermis shifted from ∼ 500 to ∼ 775 m, in an ex- different water column oxygen profiles and OMZ inten- panded OMZ compared to a thinner OMZ, but remained at sity (lowest oxygen concentration and its vertical extent in similar low oxygen levels in -
Tesis Estructura Comunitaria De Copepodos .Pdf
Universidad de Concepción Dirección de Postgrado Facultad de Ciencias Naturales y Oceanográficas Programa de Magister en Ciencias mención Oceanografía Estructura comunitaria de copépodos pelágicos asociados a montes submarinos de la Dorsal Juan Fernández (32-34°S) en el Pacífico Sur Oriental Tesis para optar al grado de Magíster en Ciencias con mención en Oceanografía PAMELA ANDREA FIERRO GONZÁLEZ CONCEPCIÓN-CHILE 2019 Profesora Guía: Pamela Hidalgo Díaz Departamento de Oceanografía, Facultad de Ciencias Naturales y Oceanográficas Universidad de Concepción Profesor Co-guía: Rubén Escribano Departamento de Oceanografía, Facultad de Ciencias Naturales y Oceanográficas Universidad de Concepción La Tesis de “Magister en Ciencias con mención en Oceanografía” titulada “Estructura comunitaria de copépodos pelágicos asociados a montes submarinos de la Dorsal Juan Fernández (32-34°S) en el Pacífico sur oriental”, de la Srta. “PAMELA ANDREA FIERRO GONZÁLEZ” y realizada bajo la Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, ha sido aprobada por la siguiente Comisión de Evaluación: Dra. Pamela Hidalgo Díaz Profesora Guía Universidad de Concepción Dr. Rubén Escribano Profesor Co-Guía Universidad de Concepción Dr. Samuel Hormazábal Miembro de la Comisión Evaluadora Pontificia Universidad Católica de Valparaíso Dr. Fabián Tapia Director Programa de Magister en Oceanografía Universidad de Concepción ii A Juan Carlos y Sebastián iii AGRADECIMIENTOS Agradezco a quienes con su colaboración y apoyo hicieron posible el desarrollo y término de esta tesis. En primer lugar, agradezco a los miembros de mi comisión de tesis. A mi profesora guía, Dra. Pamela Hidalgo, por apoyarme y guiarme en este largo camino de formación académica, por su gran calidad humana, contención y apoyo personal. -
General Background
Guidelines for the Establishment of Environmental Quality Objectives and Targets in the Coastal Zone of the Western Indian Ocean (WIO) Region October 2009 WIO region: Environmental Quality Objectives and Targets October 2009 First published in Kenya in 2009 by the United Nations Environment Programme (UNEP)/Nairobi Convention Secretariat and the Council for Scientific and Industrial Research of South Africa (CSIR). Copyright © 2009, UNEP/Nairobi Convention Secretariat and CSIR. UNEP/GEF WIO-LaB Technical Report Series No. 2009/7 CSIR Report Number: CSIR/NRE/CO/ER/2009/0115/A Copyright notice: This publication may be reproduced in whole or in part and in any form for educational or non-profit purposes without special permission from the copyright holder provided that acknowledgement of the source is made. UNEP/Nairobi Convention Secretariat and CSIR would appreciate receiving a copy of any publication that uses this publication as a source. No use of this publication may be made for resale or for any other commercial purpose without prior permission in writing from UNEP/Nairobi Convention Secretariat and CSIR. Disclaimer: The contents of this report do not necessarily reflect the views and policies of UNEP. The designations employed and the presentations do not imply of any opinion whatsoever on the part of the UNEP, or of any cooperating organization concerning the legal status of any country, territory, city or area, of its authorities, or of the delineation of its territories or boundaries. For additional information please contact: UNEP/Nairobi Convention Secretariat Council for Scientific and Industrial Research (CSIR) United Nations Environment Programme P O Box 17001, Durban, South Africa United Nations Avenue, Gigiri, Tel: +27 31 2422356 P.O Box 47074, Nairobi, Kenya Fax: +27 31 2612509 Tel: +254 20 7621250/7622025 E-mail: [email protected] E-mail: [email protected] Principal Authors: Susan Taljaard (CSIR, Stellenbosch), Steven Weerts (CSIR, Durban), Shamilla Pillay (CSIR, Durban) and Anisha Rajkumar (CSIR, Durban) Technical Editors: Dr. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
A Simulation of the Distribution of Acartia Clausi During Oregon Upwelling, August 1973
Journal of Plankton Research Volume 2 Number 1 1980 A simulation of the distribution of Acartia clausi during Oregon Upwelling, August 1973 J.S.Wroblewski Department of Oceanography, Dalhousie University, Halifax, Nova Scotia B3H4J1, Canada Downloaded from https://academic.oup.com/plankt/article-abstract/2/1/43/1463810 by Old Dominion University user on 08 July 2019 (Received August 1979; revised November 1979; accepted December 1979) Abstract. The distribution of the estuarine copepod Acartia clausi in coastal waters off Oregon during an upwelling period in August 1973 is simulated. A time dependent, two dimensional (x, z, t) model relates maximum offshore extent of the copepod's four life stages (egg, nauplius, copepodite, and adult) to in- tensity of the wind stress driving the upwelling circulation, stage development time, and mortality. Realistic solutions are obtained by using actual intermittent wind forcing recorded by an anemometer at Newport. Offshore transport is overestimated when the circulation model is driven by theoretical con- tinuous winds, suggesting zooplankton may be washed out of coastal upwelling zones (e.g. off Northwest Africa) which undergo periods of prolonged upwelling. With an accurate model of offshore transport and stage development time, the mismatch between predicted and observed distributions may be used to estimate field mortality of the various stages. Introduction Zooplankton standing stock was once believed to be greater in the slope region off Oregon than over the continental shelf during the summer upwelling season. Peterson (1972) surveyed the oceanic, slope and shelf regions but did not sample the nearshore zone when making this conclusion. In a detailed study of the Oregon up- welling zone, Peterson and Miller (1975) found high concentrations of copepods in the upper 20 m of the water column within 15 km of the coast during the 1969-71 upwelling seasons, as did Myers (1975) in August, 1973. -
Mubeen ARA Thesis Pdf.Pdf
ACKNOWLEGMENT…………………………………………………………… i LIST OF TABLE……………………………………………………………..…….ii-iii LIST OF FIGURES…………………………………………………………….…..iv-x THESIS ABSTRACT………………………………………………………………xi-xii CHAPTER # 1 INTRODUCTION OF DISSERTATION…………………………………………1 INTRODUCTION.................................................................................................2 AIMS AND OBJECTIVES OF STUDY………………………………………...6 STRUCTURE OF THESIS……...........................................................................6-7 REFERENCES......................................................................................................9-14 CHAPTER # 2 ENVIRONMENTAL EFFECTS ON ZOOPLANKTONS COMMUNITY DYNAMICS AND ABUNDANCE IN COASTAL WATERS, MANORA, PAKISTAN..................................................................................................................8 ABSTRACT .................................................................................................................9 1. INTRODUCTION .........................................................................................10-12 2. MATERIALS & METHODS.........................................................................13-18 3. RESULTS.......................................................................................................19-47 3.1. VARIATIONS IN ENVIRONMENTAL PARAMETERS 3.2 MESOZOOPLANKTON DIVERSITY AND ABUNDANCE 3.3. EFFECTS OF ENVIRONMENTAL VARIABLES ON MZ 3.4. MESOZOOPLANKTONS AND CHLOROPHYLL RELATION 4. DISCUSSION .......................................................................................................48-51 -
Acartia Tonsa
NOBANIS - Marine invasive species in Nordic waters - Fact Sheet Acartia tonsa Author of this species fact sheet: Kathe R. Jensen, Zoological Museum, Natural History Museum of Denmark, Universiteteparken 15, 2100 København Ø, Denmark. Phone: +45 353-21083, E-mail: [email protected] Bibliographical reference – how to cite this fact sheet: Jensen, Kathe R. (2010): NOBANIS – Invasive Alien Species Fact Sheet – Acartia tonsa – From: Identification key to marine invasive species in Nordic waters – NOBANIS www.nobanis.org, Date of access x/x/201x. Species description Species name Acartia tonsa, Dana, 1849 – a planktonic copepod Synonyms Acartia (Acanthacartia) tonsa; Acartia giesbrechti Dahl, 1894; Acartia bermudensis Esterly, 1911; Acartia floridana Davis, 1948; Acartia gracilis Herrick, 1887; Acartia tonsa cryophylla Björnberg, 1963. Common names Aerjas tömbik (tulnuk-tömbik) (EE), Hankajalkaisäyriäinen (FI), Hoppkräfta (SE), Acartia, akartsia (RU) Identification Several similar species occur in the area: Acartia clausi Giesbrecht, 1889, A. longiremis (Liljeborg, 1853) and A. bifilosa (Giesbrecht, 1881). The latter species prefers low salinity waters (David et al., 2007), like A. tonsa, whereas A. clausi prefers high salinities (Calliari et al., 2006). A. longremis has a northern boreal-arctic distribution (Lee & McAlice, 1979), whereas A. clausi is widespread in warmer waters including the Mediterranean and Black Sea (Gubanova, 2000). Acartia tonsa is usually about 1 mm long (up to 1.5 mm) (Garmew et al., 1994; Belmonte et al., 1994; Marcus & Wilcox, 2007) and hence a microscope is required for identification. It has a relatively short abdomen, and relative body width is higher than in sympatric congeners. Females are only slightly larger than males, whereas in A. -
Observing Copepods Through a Genomic Lens James E Bron1*, Dagmar Frisch2, Erica Goetze3, Stewart C Johnson4, Carol Eunmi Lee5 and Grace a Wyngaard6
Bron et al. Frontiers in Zoology 2011, 8:22 http://www.frontiersinzoology.com/content/8/1/22 DEBATE Open Access Observing copepods through a genomic lens James E Bron1*, Dagmar Frisch2, Erica Goetze3, Stewart C Johnson4, Carol Eunmi Lee5 and Grace A Wyngaard6 Abstract Background: Copepods outnumber every other multicellular animal group. They are critical components of the world’s freshwater and marine ecosystems, sensitive indicators of local and global climate change, key ecosystem service providers, parasites and predators of economically important aquatic animals and potential vectors of waterborne disease. Copepods sustain the world fisheries that nourish and support human populations. Although genomic tools have transformed many areas of biological and biomedical research, their power to elucidate aspects of the biology, behavior and ecology of copepods has only recently begun to be exploited. Discussion: The extraordinary biological and ecological diversity of the subclass Copepoda provides both unique advantages for addressing key problems in aquatic systems and formidable challenges for developing a focused genomics strategy. This article provides an overview of genomic studies of copepods and discusses strategies for using genomics tools to address key questions at levels extending from individuals to ecosystems. Genomics can, for instance, help to decipher patterns of genome evolution such as those that occur during transitions from free living to symbiotic and parasitic lifestyles and can assist in the identification of genetic mechanisms and accompanying physiological changes associated with adaptation to new or physiologically challenging environments. The adaptive significance of the diversity in genome size and unique mechanisms of genome reorganization during development could similarly be explored. -
A Guide to the Meso-Scale Production of the Copepod Acartia Tonsa
Guide to the meso-scale production of the copepod Acartia tonsa Item Type monograph Authors Marchus, Nancy H.; Wilcox, Jeffrey A. Publisher Florida Sea Grant College Program Download date 29/09/2021 06:32:05 Link to Item http://hdl.handle.net/1834/20023 A GUIDE TO THE MESO-SCALE PRODUCTION OF THE COPEPOD ACARTIA TONSA Nancy H. Marcus and Jeffrey A. Wilcox Florida State University Department of Oceanography Biological Oceanography This manual is based on research supported by three separate agencies: the United States Department of Agriculture-Agricultural Research Service (ARS) through the Harbor Branch Oceanographic Institution (HBOI) via a sub- contract (#20021007) to N. Marcus, G. Buzyna, and J. Wilcox , the State of Florida Department of Agriculture through a grant to the Mote Marine Laboratory and a sub-contract (MML-185491B) to N. Marcus; and a grant from the Florida Sea Grant College Program (project R/LR-A-36) to N. Marcus. Appreciation is also expressed for the labors of Alan Michels, Patrick Tracy, Chris Sedlacek, Cris Oppert, Laban Lindley, Guillaume Drillet, and Glenn Miller, as well as for the support of the Florida State University Marine Laboratory staff. This publication was supported by the National Sea Grant College Program of the U.S. Department of Commerce’s National Oceanic and Atmospheric Administration (NOAA), Grant No. NA16RG-2195. The views expressed are those of the authors and do not necessarily reflect the view of these organizations. This digital resource, “A Guide to the Meso-Scale Production of the Copepod Acartia tonsa,” is protected by copyrights, freely accessible for non-commercial and non-derivative use, and available for download. -
AGUIDE to Frle DEVELOPMENTAL STAGES of COMMON COASTAL
A GUIDE TO frlE DEVELOPMENTAL STAGES OF COMMON COASTAL, GeORGES BANK AND GULF OF MAINE COPEPODS BY Janet A. Murphy and Rosalind E. Cohen National Marine Fisheries Service Northeast Fisheries Center Woods Hole Laboratory Woods Hole, MA 02543 Laboratory Reference No. 78-53 Table of Contents List of Plates i,,;i,i;i Introduction '. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. 1 Acarti a cl aus; .. 2 Aca rtia ton sa .. 3 Aca rtia danae .. 4 Acartia long; rem; s co e"" 5 Aetidi us artllatus .. 6 A1teutha depr-e-s-s-a· .. 7 Calanu5 finmarchicus .............•............................ 8 Calanus helgolandicus ~ 9 Calanus hyperboreus 10 Calanus tenuicornis .......................•................... 11 Cal oca 1anus pavo .....................•....•....•.............. 12 Candaci a armata Ii II .. .. .. .. .. .. .. .. .. .. 13 Centropages bradyi............................................ 14 Centropages hama tus .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. 15 ~ Centropages typi cus " .. " 0 16 Clausocalanus arcuicornis ..............................•..•... 17 Clytemnestra rostra~ta ................................•.•........ 18 Corycaeus speciosus........................................... 19 Eucalanus elongatu5 20 Euchaeta mar; na " . 21 Euchaeta norveg; ca III co .. 22 Euchirel1a rostrata . 23 Eurytemora ameri cana .......................................•.. 24 Eurytemora herdmani , . 25 Eurytemora hi rundoi des . 26 Halithalestris croni ..................•......................