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Table of Contents SEPTEMBER 2012 • VOLUME 86 • NO. 17 TABLE OF CONTENTS SPOTLIGHT Articles of Significant Interest Selected from This Issue by the 8919 Editors MINIREVIEW Targeted DNA Mutagenesis for the Cure of Chronic Viral Joshua T. Schiffer, Martine Aubert, 8920–8936 Infections Nicholas D. Weber, Esther Mintzer, Daniel Stone, and Keith R. Jerome STRUCTURE AND ASSEMBLY Cell Culture-Adaptive Mutations Promote Viral Protein-Protein Jieyun Jiang and Guangxiang Luo 8987–8997 Interactions and Morphogenesis of Infectious Hepatitis C Virus Biochemical Analysis of the Complex between the Tetrameric Janina S. Langner, Nina V. Fuchs, Jan 9079–9087 Export Adapter Protein Rec of HERV-K/HML-2 and the Hoffmann, Alexander Wittmann, Responsive RNA Element RcRE pck30 Bernhard Brutschy, Roswitha Löwer, and Beatrix Suess GENOME REPLICATION AND REGULATION OF VIRAL GENE EXPRESSION Drosophila melanogaster as a Model Organism for Bluetongue Andrew E. Shaw, Eva Veronesi, 9015–9024 Virus Replication and Tropism Guillemette Maurin, Najate Ftaich, Francois Guiguen, Frazer Rixon, Maxime Ratinier, Peter Mertens, Simon Carpenter, Massimo Palmarini, Christophe Terzian, and Frederick Arnaud Hepatitis D Virus Isolates with Low Replication and Epithelial- Hsuan Hui Shih, I-Jane Sheen, Chien- 9044–9054 Mesenchymal Transition-Inducing Activity Are Associated with Wei Su, Wei-Li Peng, Ling-Hui Lin, Disease Remission and Jaw-Ching Wu Latent HIV-1 Infection Occurs in Multiple Subsets of Lucy A. McNamara, Janani A. Ganesh, 9337–9350 Hematopoietic Progenitor Cells and Is Reversed by NF-␬B and Kathleen L. Collins Activation Cohesins Repress Kaposi’s Sarcoma-Associated Herpesvirus Horng-Shen Chen, Priyankara 9454–9464 Immediate Early Gene Transcription during Latency Wikramasinghe, Louise Showe, and Paul M. Lieberman Adaptive Changes in Alphavirus mRNA Translation Allowed Iván Ventoso 9484–9494 Colonization of Vertebrate Hosts Identification of Novel T Cell Factor 4 (TCF-4) Binding Sites on Lisa J. Henderson, Srinivas D. 9495–9503 the HIV Long Terminal Repeat Which Associate with TCF-4, Narasipura, Vyacheslav Adarichev, ␤-Catenin, and SMAR1 To Repress HIV Transcription Fatah Kashanchi, and Lena Al-Harthi Reverse Genetics Analysis of Poxvirus Intermediate Robin D. Warren, Catherine A. Cotter, 9514–9519 Transcription Factors and Bernard Moss Human Papillomaviruses Recruit Cellular DNA Repair and Kenric A. Gillespie, Kavi P. Mehta, 9520–9526 Homologous Recombination Factors to Viral Replication Laimonis A. Laimins, and Cary A. Centers Moody Continued on following page Continued from preceding page SEPTEMBER 2012 • VOLUME 86 • NUMBER 17 GENETIC DIVERSITY AND EVOLUTION Reevaluation of the Coding Potential and Proteomic Analysis of Daniel Malouli, Ernesto S. Nakayasu, 8959–8973 the BAC-Derived Rhesus Cytomegalovirus Strain 68-1 Kasinath Viswanathan, David G. Camp II, W. L. William Chang, Peter A. Barry, Richard D. Smith, and Klaus Früh Lineage-Specific Differences between Human and Simian Andrés Finzi, Beatriz Pacheco, Shi-Hua 8974–8986 Immunodeficiency Virus Regulation of gp120 Trimer Xiang, Marie Pancera, Alon Association and CD4 Binding Herschhorn, Liping Wang, Xing Zeng, Anik Desormeaux, Peter D. Kwong, and Joseph Sodroski Bats Worldwide Carry Hepatitis E Virus-Related Viruses That Jan Felix Drexler, Annika Seelen, Victor 9134–9147 Form a Putative Novel Genus within the Family Hepeviridae Max Corman, Adriana Fumie Tateno, Veronika Cottontail, Rodrigo Melim Zerbinati, Florian Gloza-Rausch, Stefan M. Klose, Yaw Adu-Sarkodie, Samuel K. Oppong, Elisabeth K. V. Kalko, Andreas Osterman, Andrea Rasche, Alexander Adam, Marcel A. Müller, Rainer G. Ulrich, Eric M. Leroy, Alexander N. Lukashev, and Christian Drosten Diversity and Relationships of Cocirculating Modern Human Sarah M. McDonald, Allison O. 9148–9162 Rotaviruses Revealed Using Large-Scale Comparative Genomics McKell, Christine M. Rippinger, John K. McAllen, Asmik Akopov, Ewen F. Kirkness, Daniel C. Payne, Kathryn M. Edwards, James D. Chappell, and John T. Patton The First Full-Length Endogenous Hepadnaviruses: Wei Liu, Shaokun Pan, Huijuan Yang, 9510–9513 Identification and Analysis Weiya Bai, Zhongliang Shen, Jing Liu, and Youhua Xie VIRUS-CELL INTERACTIONS Large Ribosomal Protein 4 Increases Efficiency of Viral Lisa Green, Brian Houck-Loomis, 8949–8958 Recoding Sequences Andrew Yueh, and Stephen P. Goff A Nuclear Localization Signal in Herpesvirus Protein VP1-2 Is F. Abaitua, M. Hollinshead, M. Bolstad, 8998–9014 Essential for Infection via Capsid Routing to the Nuclear Pore C. M. Crump, and P. O’Hare Detailed Mapping of Determinants within the Porcine Takele Argaw and Carolyn A. Wilson 9096–9104 Endogenous Retrovirus Envelope Surface Unit Identifies Critical Residues for Human Cell Infection within the Proline-Rich Region HMGB1 Protein Binds to Influenza Virus Nucleoprotein and Dorothée Moisy, Sergiy V. Avilov, Yves 9122–9133 Promotes Viral Replication Jacob, Brid M. Laoide, Xingyi Ge, Florence Baudin, Nadia Naffakh, and Jean-Luc Jestin Impact of VP1-Specific Protein Sequence Motifs on Adeno- Ruth Popa-Wagner, Manvi Porwal, 9163–9174 Associated Virus Type 2 Intracellular Trafficking and Nuclear Michael Kann, Matthias Reuss, Marc Entry Weimer, Luise Florin, and Jürgen A. Kleinschmidt The “Bridge” in the Epstein-Barr Virus Alkaline Exonuclease Daniëlle Horst, Wim P. Burmeister, 9175–9187 Protein BGLF5 Contributes to Shutoff Activity during Ingrid G. J. Boer, Daphne van Leeuwen, Productive Infection Marlyse Buisson, Alexander E. Gorbalenya, Emmanuel J. H. J. Wiertz, and Maaike E. Ressing Continued on following page Continued from preceding page SEPTEMBER 2012 • VOLUME 86 • NUMBER 17 Functional Balance of the Hemagglutinin and Neuraminidase Rui Xu, Xueyong Zhu, Ryan McBride, 9221–9232 Activities Accompanies the Emergence of the 2009 H1N1 Corwin M. Nycholat, Wenli Yu, James Influenza Pandemic C. Paulson, and Ian A. Wilson The PDZ1 and PDZ3 Domains of MAGI-1 Regulate the Eight- Abimbola Olayinka Kolawole, Priyanka 9244–9254 Exon Isoform of the Coxsackievirus and Adenovirus Receptor Sharma, Ran Yan, Kyle Joseph Edward Lewis, Zhigang Xu, Heather Ann Hostetler, and Katherine Julie Diane Ashbourne Excoffon Impact on the Endoplasmic Reticulum and Golgi Apparatus of Romain Grangeon, Maxime Agbeci, 9255–9265 Turnip Mosaic Virus Infection Jun Chen, Gilles Grondin, Huanquan Zheng, and Jean-François Laliberté Characterization of the Early Steps of Human Parvovirus B19 Silva Quattrocchi, Nico Ruprecht, 9274–9284 Infection Claudia Bönsch, Sven Bieli, Christoph Zürcher, Klaus Boller, Christoph Kempf, and Carlos Ros Roles of Cell Signaling Pathways in Cell-to-Cell Contact- Asuka Nanbo, Haruna Terada, 9285–9296 Mediated Epstein-Barr Virus Transmission Kunihiro Kachi, Kenzo Takada, and Tadashi Matsuda Foot-and-Mouth Disease Virus 3C Protease Cleaves NEMO To Dang Wang, Liurong Fang, Kui Li, 9311–9322 Impair Innate Immune Signaling Huijuan Zhong, Jinxiu Fan, Chao Ouyang, Huan Zhang, Erzhen Duan, Rui Luo, Zhongming Zhang, Xiangtao Liu, Huanchun Chen, and Shaobo Xiao Inhibition of Human Cytomegalovirus Immediate-Early Gene Jennifer D. Oduro, Ralf Uecker, 9369–9383 Expression by Cyclin A2-Dependent Kinase Activity Christian Hagemeier, and Lüder Wiebusch Proteome-Wide Overexpression of Host Proteins for Muhammad Shah Nawaz-ul-Rehman, 9384–9395 Identification of Factors Affecting Tombusvirus RNA Natalia Martinez-Ochoa, Helene Pascal, Replication: an Inhibitory Role of Protein Kinase C Zsuzsanna Sasvari, Christin Herbst, Kai Xu, Jannine Baker, Monika Sharma, Alan Herbst, and Peter D. Nagy Entry of Hepatitis B Virus into Immortalized Human Primary Hsiu-Chen Huang, Chun-Chi Chen, 9443–9453 Hepatocytes by Clathrin-Dependent Endocytosis Wen-Cheng Chang, Mi-Hua Tao, and Cheng Huang Quantitative Measurement of Human Papillomavirus Type 16 Ziad Sahab, Sawali R. Sudarshan, 9465–9473 E5 Oncoprotein Levels in Epithelial Cell Lines by Mass Xuefeng Liu, YiYu Zhang, Alexander Spectrometry Kirilyuk, Christopher M. Kamonjoh, Vera Simic, Yuhai Dai, Stephen W. Byers, John Doorbar, Frank A. Suprynowicz, and Richard Schlegel Ovine TRIM5␣ Can Restrict Visna/Maedi Virus P. Jáuregui, H. Crespo, I. Glaria, L. 9504–9509 Luján, A. Contreras, S. Rosati, D. de Andrés, B. Amorena, G. J. Towers, and R. Reina A Common Strategy for Host RNA Degradation by Divergent Marta Maria Gaglia, Sergio 9527–9530 Viruses Covarrubias, Wesley Wong, and Britt A. Glaunsinger CELLULAR RESPONSE TO INFECTION Mammalian Innate Resistance to Highly Pathogenic Avian Rahul K. Nelli, Stephen P. Dunham, 9201–9210 Influenza H5N1 Virus Infection Is Mediated through Reduced Suresh V. Kuchipudi, Gavin A. White, Proinflammation and Infectious Virus Release Belinda Baquero-Perez, Pengxiang Chang, Amir Ghaemmaghami, Sharon M. Brookes, Ian H. Brown, and Kin- Chow Chang Continued on following page Continued from preceding page SEPTEMBER 2012 • VOLUME 86 • NUMBER 17 TRANSFORMATION AND ONCOGENESIS Human T-Cell Leukemia Virus Type 1 (HTLV-1) bZIP Factor Hélène Gazon, Isabelle Lemasson, 9070–9078 Requires Cellular Transcription Factor JunD To Upregulate Nicholas Polakowski, Raymond HTLV-1 Antisense Transcription from the 3= Long Terminal Césaire, Masao Matsuoka, Benoit Repeat Barbeau, Jean-Michel Mesnard, and Jean-Marie Peloponese, Jr. HTLV-1 Tax-Induced Rapid Senescence Is Driven by the Yik-Khuan Ho, Huijun Zhi, Dominic 9474–9483 Transcriptional Activity of NF-␬B and Depends on Chronically DeBiaso, Subha Philip, Hsiu-Ming Activated IKK␣ and p65/RelA Shih, and Chou-Zen Giam GENE DELIVERY Safer, Silencing-Resistant Lentiviral Vectors:
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