Rinaldiella Pentagonospora Fungal Planet Description Sheets 301
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Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces Vermicularis Gen. Et Comb. Nov
microorganisms Article Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces vermicularis gen. et comb. nov. Karen Harms 1,2 , Frank Surup 1,2,* , Marc Stadler 1,2 , Alberto Miguel Stchigel 3 and Yasmina Marin-Felix 1,* 1 Department Microbial Drugs, Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany; [email protected] (K.H.); [email protected] (M.S.) 2 Institute of Microbiology, Technische Universität Braunschweig, Spielmannstrasse 7, 38106 Braunschweig, Germany 3 Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, C/ Sant Llorenç 21, 43201 Reus, Tarragona, Spain; [email protected] * Correspondence: [email protected] (F.S.); [email protected] (Y.M.-F.) Abstract: The new genus Morinagamyces is introduced herein to accommodate the fungus Apiosordaria vermicularis as inferred from a phylogenetic study based on sequences of the internal transcribed spacer region (ITS), the nuclear rDNA large subunit (LSU), and partial fragments of ribosomal polymerase II subunit 2 (rpb2) and β-tubulin (tub2) genes. Morinagamyces vermicularis was analyzed for the production of secondary metabolites, resulting in the isolation of a new depsipeptide named morinagadepsin (1), and the already known chaetone B (3). While the planar structure of 1 was elucidated by extensive 1D- and 2D-NMR analysis and high-resolution mass spectrometry, the absolute configuration of the building blocks Ala, Val, and Leu was determined as -L by Marfey’s method. The configuration of the 3-hydroxy-2-methyldecanyl unit was assigned as 22R,23R by Citation: Harms, K.; Surup, F.; Stadler, M.; Stchigel, A.M.; J-based configuration analysis and Mosher’s method after partial hydrolysis of the morinagadepsin Marin-Felix, Y. -
On a New Species of Chaetomidium, C. Vicugnae, with a Cephalothecoid
On a new species of Chaetomidium, C. vicugnae, with a cepha- lothecoid peridium and its relationships with Chaetomiaceae (Sordariales) Francesco DOVERI Abstract: a sample of vicuña dung from a Chilean coastal desert was submitted to the attention of the au- thor, who at first sight noticed the presence of different pyrenomycetes. several hairy cleistothecia particu- larly caught his attention and were subjected to a morphological study that proved them to belong to a new species of Chaetomidium. after mentioning the main features of Sordariales and Chaetomiaceae, the author describes in detail the macro-and microscopic characters of the new species Chaetomidium vicugnae Ascomycete.org, 10 (2) : 86–96 and compares it with all the other Chaetomidium spp. with a cephalothecoid peridium. The extensive dis- Mise en ligne le 22/04/2018 cussion focuses on the characterization and relationships of the genus Chaetomidium and Chaetomidium 10.25664/ART-0231 vicugnae within the complex family Chaetomiaceae. all collections of the related species are recorded and dung is regarded as the preferential substrate. Keys are provided to sexual morph genera of Chaetomiaceae and to Chaetomidium species with a cephalothecoid peridium. Keywords: ascomycota, coprophily, germination, homoplasy, morphology, peridial frame, systematics. Introduction zing the importance of a future systematic study of vicuña dung for a better knowledge of the generic relationships in this family. My studies on coprophilous ascomycetes (Doveri, 2004, 2011) al- lowed me to meet with several representatives of Sordariales Cha- Materials and methods def. ex D. Hawksw. & o.e. erikss., an order identifiable with the so called “pyrenomycetes” s.str., i.e. -
Bionectria Pseudochroleuca, a New Host Record on Prunus Sp. in Northern Thailand
Studies in Fungi 5(1): 358–367 (2020) www.studiesinfungi.org ISSN 2465-4973 Article Doi 10.5943/sif/5/1/17 Bionectria pseudochroleuca, a new host record on Prunus sp. in northern Thailand Huanraluek N1, Jayawardena RS1,2, Aluthmuhandiram JVS 1, 2,3, Chethana KWT1,2 and Hyde KD1,2,4* 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 3Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People’s Republic of China 4Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China Huanraluek N, Jayawardena RS, Aluthmuhandiram JVS, Chethana KWT, Hyde KD 2020 – Bionectria pseudochroleuca, a new host record on Prunus sp. in northern Thailand. Studies in Fungi 5(1), 358–367, Doi 10.5943/sif/5/1/17 Abstract This study presents the first report of Bionectria pseudochroleuca (Bionectriaceae) on Prunus sp. (Rosaceae) from northern Thailand, based on both morphological characteristics and multilocus phylogenetic analyses of internal transcribe spacer (ITS) and Beta-tubulin (TUB2). Key words – Bionectriaceae – Clonostachys – Hypocreales – Nectria – Prunus spp. – Sakura Introduction Bionectriaceae are commonly found in soil, on woody substrates and on other fungi (Rossman et al. 1999, Schroers 2001). Bionectria is a member of Bionectriaceae (Rossman et al. 2013, Maharachchikumbura et al. 2015, 2016) and is distinct from other genera in the family as it has characteristic ascospores and ascus morphology, but none of these are consistently found in all Bionectria species (Schroers 2001). Some species of this genus such as B. -
Taxonomic Re-Examination of Nine Rosellinia Types (Ascomycota, Xylariales) Stored in the Saccardo Mycological Collection
microorganisms Article Taxonomic Re-Examination of Nine Rosellinia Types (Ascomycota, Xylariales) Stored in the Saccardo Mycological Collection Niccolò Forin 1,* , Alfredo Vizzini 2, Federico Fainelli 1, Enrico Ercole 3 and Barbara Baldan 1,4,* 1 Botanical Garden, University of Padova, Via Orto Botanico, 15, 35123 Padova, Italy; [email protected] 2 Institute for Sustainable Plant Protection (IPSP-SS Torino), C.N.R., Viale P.A. Mattioli, 25, 10125 Torino, Italy; [email protected] 3 Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli, 25, 10125 Torino, Italy; [email protected] 4 Department of Biology, University of Padova, Via Ugo Bassi, 58b, 35131 Padova, Italy * Correspondence: [email protected] (N.F.); [email protected] (B.B.) Abstract: In a recent monograph on the genus Rosellinia, type specimens worldwide were revised and re-classified using a morphological approach. Among them, some came from Pier Andrea Saccardo’s fungarium stored in the Herbarium of the Padova Botanical Garden. In this work, we taxonomically re-examine via a morphological and molecular approach nine different Rosellinia sensu Saccardo types. ITS1 and/or ITS2 sequences were successfully obtained applying Illumina MiSeq technology and phylogenetic analyses were carried out in order to elucidate their current taxonomic position. Only the Citation: Forin, N.; Vizzini, A.; ITS1 sequence was recovered for Rosellinia areolata, while for R. geophila, only the ITS2 sequence was Fainelli, F.; Ercole, E.; Baldan, B. recovered. We proposed here new combinations for Rosellinia chordicola, R. geophila and R. horridula, Taxonomic Re-Examination of Nine R. ambigua R. -
Molecular Systematics of the Sordariales: the Order and the Family Lasiosphaeriaceae Redefined
Mycologia, 96(2), 2004, pp. 368±387. q 2004 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae rede®ned Sabine M. Huhndorf1 other families outside the Sordariales and 22 addi- Botany Department, The Field Museum, 1400 S. Lake tional genera with differing morphologies subse- Shore Drive, Chicago, Illinois 60605-2496 quently are transferred out of the order. Two new Andrew N. Miller orders, Coniochaetales and Chaetosphaeriales, are recognized for the families Coniochaetaceae and Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 Chaetosphaeriaceae respectively. The Boliniaceae is University of Illinois at Chicago, Department of accepted in the Boliniales, and the Nitschkiaceae is Biological Sciences, Chicago, Illinois 60607-7060 accepted in the Coronophorales. Annulatascaceae and Cephalothecaceae are placed in Sordariomyce- Fernando A. FernaÂndez tidae inc. sed., and Batistiaceae is placed in the Euas- Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 comycetes inc. sed. Key words: Annulatascaceae, Batistiaceae, Bolini- aceae, Catabotrydaceae, Cephalothecaceae, Ceratos- Abstract: The Sordariales is a taxonomically diverse tomataceae, Chaetomiaceae, Coniochaetaceae, Hel- group that has contained from seven to 14 families minthosphaeriaceae, LSU nrDNA, Nitschkiaceae, in recent years. The largest family is the Lasiosphaer- Sordariaceae iaceae, which has contained between 33 and 53 gen- era, depending on the chosen classi®cation. To de- termine the af®nities and taxonomic placement of INTRODUCTION the Lasiosphaeriaceae and other families in the Sor- The Sordariales is one of the most taxonomically di- dariales, taxa representing every family in the Sor- verse groups within the Class Sordariomycetes (Phy- dariales and most of the genera in the Lasiosphaeri- lum Ascomycota, Subphylum Pezizomycotina, ®de aceae were targeted for phylogenetic analysis using Eriksson et al 2001). -
Multi-Gene Phylogenies Indicate Ascomal Wall Morphology Is a Better
Molecular Phylogenetics and Evolution 35 (2005) 60–75 www.elsevier.com/locate/ympev Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi) Andrew N. Miller a,¤, Sabine M. Huhndorf b a Illinois Natural History Survey, Center for Biodiversity, 607 E. Peabody Dr., Champaign, IL 61820, USA b The Field Museum of Natural History, Botany Department, 1400 S. Lake Shore Dr., Chicago, IL 60605-2496, USA Received 3 December 2003; revised 20 October 2004 Abstract Ascospore characters have commonly been used for distinguishing ascomycete taxa, while ascomal wall characters have received little attention. Although taxa in the Sordariales possess a wide range of variation in their ascomal walls and ascospores, genera have traditionally been delimited based on diVerences in their ascospore morphology. Phylogenetic relationships of multiple representa- tives from each of several genera representing the range in ascomal wall and ascospore morphologies in the Sordariales were esti- mated using partial nuclear DNA sequences from the 28S ribosomal large subunit (LSU), -tubulin, and ribosomal polymerase II subunit 2 (RPB2) genes. These genes also were compared for their utility in predicting phylogenetic relationships in this group of fungi. Maximum parsimony and Bayesian analyses conducted on separate and combined data sets indicate that ascospore morphol- ogy is extremely homoplastic and not useful for delimiting genera. Genera represented by more than one species were paraphyletic or polyphyletic in nearly all analyses; 17 species of Cercophora segregated into at least nine diVerent clades, while six species of Podos- pora occurred in Wve clades in the LSU tree. -
Fungal Biodiversity in Extreme Environments and Wood Degradation Potential
http://waikato.researchgateway.ac.nz/ Research Commons at the University of Waikato Copyright Statement: The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). The thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: Any use you make of these documents or images must be for research or private study purposes only, and you may not make them available to any other person. Authors control the copyright of their thesis. You will recognise the author’s right to be identified as the author of the thesis, and due acknowledgement will be made to the author where appropriate. You will obtain the author’s permission before publishing any material from the thesis. Fungal biodiversity in extreme environments and wood degradation potential A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biological Sciences at The University of Waikato by Joel Allan Jurgens 2010 Abstract This doctoral thesis reports results from a multidisciplinary investigation of fungi from extreme locations, focusing on one of the driest and thermally broad regions of the world, the Taklimakan Desert, with comparisons to polar region deserts. Additionally, the capability of select fungal isolates to decay lignocellulosic substrates and produce degradative related enzymes at various temperatures was demonstrated. The Taklimakan Desert is located in the western portion of the People’s Republic of China, a region of extremes dominated by both limited precipitation, less than 25 mm of rain annually and tremendous temperature variation. -
An Overview of the Systematics of the Sordariomycetes Based on a Four-Gene Phylogeny
Mycologia, 98(6), 2006, pp. 1076–1087. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny Ning Zhang of 16 in the Sordariomycetes was investigated based Department of Plant Pathology, NYSAES, Cornell on four nuclear loci (nSSU and nLSU rDNA, TEF and University, Geneva, New York 14456 RPB2), using three species of the Leotiomycetes as Lisa A. Castlebury outgroups. Three subclasses (i.e. Hypocreomycetidae, Systematic Botany & Mycology Laboratory, USDA-ARS, Sordariomycetidae and Xylariomycetidae) currently Beltsville, Maryland 20705 recognized in the classification are well supported with the placement of the Lulworthiales in either Andrew N. Miller a basal group of the Sordariomycetes or a sister group Center for Biodiversity, Illinois Natural History Survey, of the Hypocreomycetidae. Except for the Micro- Champaign, Illinois 61820 ascales, our results recognize most of the orders as Sabine M. Huhndorf monophyletic groups. Melanospora species form Department of Botany, The Field Museum of Natural a clade outside of the Hypocreales and are recognized History, Chicago, Illinois 60605 as a distinct order in the Hypocreomycetidae. Conrad L. Schoch Glomerellaceae is excluded from the Phyllachorales Department of Botany and Plant Pathology, Oregon and placed in Hypocreomycetidae incertae sedis. In State University, Corvallis, Oregon 97331 the Sordariomycetidae, the Sordariales is a strongly supported clade and occurs within a well supported Keith A. Seifert clade containing the Boliniales and Chaetosphaer- Biodiversity (Mycology and Botany), Agriculture and iales. Aspects of morphology, ecology and evolution Agri-Food Canada, Ottawa, Ontario, K1A 0C6 Canada are discussed. Amy Y. -
The Taxonomy of the Model Filamentous Fungus Podospora
A peer-reviewed open-access journal MycoKeys 75: 51–69 The(2020) taxonomy of the model filamentous fungusPodospora anserina 51 doi: 10.3897/mycokeys.75.55968 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research The taxonomy of the model filamentous fungus Podospora anserina S. Lorena Ament-Velásquez1, Hanna Johannesson1, Tatiana Giraud2, Robert Debuchy3, Sven J. Saupe4, Alfons J.M. Debets5, Eric Bastiaans5, Fabienne Malagnac3, Pierre Grognet3, Leonardo Peraza-Reyes6, Pierre Gladieux7, Åsa Kruys8, Philippe Silar9, Sabine M. Huhndorf10, Andrew N. Miller11, Aaron A. Vogan1 1 Systematic Biology, Department of Organismal Biology, Uppsala University, Norbyvägen 18D, 752 36 Uppsa- la, Sweden 2 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, 91400, Orsay, France 3 Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif- sur-Yvette, France 4 IBGC, UMR 5095, CNRS Université de Bordeaux, 1 rue Camille Saint Saëns, 33077, Bordeaux, France 5 Laboratory of Genetics, Wageningen University, Arboretumlaan 4, 6703 BD, Wageningen, Netherlands 6 Instituto de Fisiología Celular, Departamento de Bioquímica y Biología Estructural, Universi- dad Nacional Autónoma de México, Mexico City, Mexico 7 UMR BGPI, Université de Montpellier, INRAE, CIRAD, Institut Agro, F-34398, Montpellier, France 8 Museum of Evolution, Botany, Uppsala University, Norbyvägen 18, 752 36, Uppsala, Sweden 9 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), F-75006, Paris, France 10 Botany Department, The Field Museum, Chicago, Illinois 60605, USA 11 Illinois Natural History Survey, University of Illinois, Champaign, IL 61820, USA Corresponding author: Aaron A. Vogan ([email protected]) Academic editor: T. -
Ascomycota, Fungi)
Fungal Diversity DOI 10.1007/s13225-014-0296-3 Coprophilous contributions to the phylogeny of Lasiosphaeriaceae and allied taxa within Sordariales (Ascomycota, Fungi) Åsa Kruys & Sabine M. Huhndorf & Andrew N. Miller Received: 28 November 2013 /Accepted: 12 July 2014 # School of Science 2014 Abstract The phylogenetic relationships of Keywords Ascomal wall . Ascomycete . β-tubulin . LSU Lasiosphaeriaceae are complicated in that the family is nrDNA . Systematics,Taxonomy paraphyletic and includes Sordariaceae and Chaetomiaceae, as well as several polyphyletic genera. This study focuses on the phylogenetic relationships of the coprophilous genera, Introduction Anopodium, Apodospora, Arnium, Fimetariella and Zygospermella. They are traditionally circumscribed based Sordariales is a large group of microfungi that occur world- on ascospore characters, which have proven homoplasious wide as degraders of dung, wood, plant material, and soil in other genera within the family. Our results based on LSU (Cannon and Kirk 2007). The order includes several well- nrDNA and ß–tubulin sequences distinguish four lineages of known members including species of Chaetomium that are Lasiosphaeriaceae taxa. Anopodium joins the clade of mor- common indoor contaminants associated with high humidity, phologically similar, yellow-pigmented species of and the model organisms Neurospora crassa, Podospora Cercophora and Lasiosphaeria. Apodospora is monophyletic anserina, Sordaria fimicola,andS. macrospora and joins a larger group of taxa with unclear affinities to each -
Acremonium Phylogenetic Overview and Revision of Gliomastix, Sarocladium, and Trichothecium
available online at www.studiesinmycology.org StudieS in Mycology 68: 139–162. 2011. doi:10.3114/sim.2011.68.06 Acremonium phylogenetic overview and revision of Gliomastix, Sarocladium, and Trichothecium R.C. Summerbell1, 2*, C. Gueidan3, 4, H-J. Schroers3, 5, G.S. de Hoog3, M. Starink3, Y. Arocha Rosete1, J. Guarro6 and J.A. Scott1, 2 1Sporometrics, Inc. 219 Dufferin Street, Suite 20C, Toronto, Ont., Canada M6K 1Y9; 2Dalla Lana School of Public Health, University of Toronto, 223 College St., Toronto ON Canada M5T 1R4; 3CBS-KNAW, Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 4Department of Botany, The Natural History Museum, Cromwell Road, SW7 5BD London, United Kingdom; 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia, Mycology Unit, Medical School; 6IISPV, Universitat Rovira i Virgili, Reus, Spain *Correspondence: Richard Summerbell, [email protected] Abstract: Over 200 new sequences are generated for members of the genus Acremonium and related taxa including ribosomal small subunit sequences (SSU) for phylogenetic analysis and large subunit (LSU) sequences for phylogeny and DNA-based identification. Phylogenetic analysis reveals that within the Hypocreales, there are two major clusters containing multiple Acremonium species. One clade contains Acremonium sclerotigenum, the genus Emericellopsis, and the genus Geosmithia as prominent elements. The second clade contains the genera Gliomastix sensu stricto and Bionectria. In addition, there are numerous smaller clades plus two multi-species clades, one containing Acremonium strictum and the type species of the genus Sarocladium, and, as seen in the combined SSU/LSU analysis, one associated subclade containing Acremonium breve and related species plus Acremonium curvulum and related species. -
Presentación De Powerpoint
SOIL ASCOMYCETES FROM DIFFERENT GEOGRAPHICAL REGIONS. Yasmina Marín Félix Dipòsit Legal: T 996-2015 ADVERTIMENT. L'accés als continguts d'aquesta tesi doctoral i la seva utilització ha de respectar els drets de la persona autora. Pot ser utilitzada per a consulta o estudi personal, així com en activitats o materials d'investigació i docència en els termes establerts a l'art. 32 del Text Refós de la Llei de Propietat Intel·lectual (RDL 1/1996). Per altres utilitzacions es requereix l'autorització prèvia i expressa de la persona autora. En qualsevol cas, en la utilització dels seus continguts caldrà indicar de forma clara el nom i cognoms de la persona autora i el títol de la tesi doctoral. No s'autoritza la seva reproducció o altres formes d'explotació efectuades amb finalitats de lucre ni la seva comunicació pública des d'un lloc aliè al servei TDX. Tampoc s'autoritza la presentació del seu contingut en una finestra o marc aliè a TDX (framing). Aquesta reserva de drets afecta tant als continguts de la tesi com als seus resums i índexs. ADVERTENCIA. El acceso a los contenidos de esta tesis doctoral y su utilización debe respetar los derechos de la persona autora. Puede ser utilizada para consulta o estudio personal, así como en actividades o materiales de investigación y docencia en los términos establecidos en el art. 32 del Texto Refundido de la Ley de Propiedad Intelectual (RDL 1/1996). Para otros usos se requiere la autorización previa y expresa de la persona autora. En cualquier caso, en la utilización de sus contenidos se deberá indicar de forma clara el nombre y apellidos de la persona autora y el título de la tesis doctoral.