bioRxiv preprint doi: https://doi.org/10.1101/2020.05.19.103812; this version posted November 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Deterministic scRNA-seq of individual intestinal organoids reveals new subtypes and coexisting distinct stem cell pools Johannes Bues1,2,8, Marjan Biočanin1,2,8, Joern Pezoldt1,2, Riccardo Dainese1,2, Antonius Chrisnandy3, Saba Rezakhani3, Wouter Saelens4,5, Vincent Gardeux1,2, Revant Gupta2,6, Julie Russeil1,2, Yvan Saeys4,5, Esther Amstad7, Manfred Claassen2,6, Matthias Lutolf3, Bart Deplancke1,2,* 1 Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland 2 Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland 3 Laboratory for Stem Cell Bioengineering, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland 4 Data mining and Modelling for Biomedicine, VIB Center for Inflammation Research, Ghent, Belgium 5 Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent, Belgium 6 Institute for Molecular Systems Biology, Eidgenössische Technische Hochschule Zürich (ETH Zürich), Zürich, Switzerland 7 Soft Materials Laboratory, Institute of Materials, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland 8 These authors contributed equally. Johannes Bues and Marjan Biočanin * To whom correspondence should be addressed. Bart Deplancke:
[email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.19.103812; this version posted November 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder.