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PL11 Inside Cover Page.Indd
THE CITY OF SAN DIEGO Annual Receiving Waters Monitoring Report for the Point Loma Ocean Outfall 2011 City of San Diego Ocean Monitoring Program Public Utilities Department Environmental Monitoring and Technical Services Division THE CITY OF SAN DIEGO June 29,2012 Mr. David Gibson, Executive Officer San Diego Regional Water Quality Control Board ·9174 Sky Park Court, Suite 100 San Diego, CA 92123 Attention: POTW Compliance Unit Dear Sir: Enclosed on CD is the 2011 Annual Receiving Waters Monitoring Report for the Point Lorna Ocean Outfall as required per NPDES Permit No. CA0107409, Order No. R9-2009-0001. This report contains data summaries, analyses and interpretations of the various portions ofthe ocean monitoring program, including oceanographic conditions, water quality, sediment characteristics, macrobenthic communities, demersal fishes and megabenthic invertebrates, and bioaccumulation of contaminants in fish tissues. I certify under penalty of law that this document and all attachments were prepared under my direction or supervision in accordance with a system designed to assure that qualified personnel properly gather and evaluate the information submitted. Based on my inquiry of the person or persons who manage the system or those persons directly responsible for gathering the information, the information submitted is, to the best of my knowledge and belief, true, accurate, and complete. I am aware that there are significant penalties for submitting false information, including the possibility of fine and imprisonment for knowing violations. Sincerely, ~>() d0~ Steve Meyer Deputy Public Utilities Director TDS/akl Enclosure: CD containing PDF file of this report cc: U. S. Environmental Protection Agency, Region 9 Public Utilities Department DIVERSITY 9192 Topaz Way. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
Saccular Otolith Mass Asymmetry in Adult Flatfishes 2581
Journal of Fish Biology (2008) 72, 2579–2594 doi:10.1111/j.1095-8649.2008.01869.x, available online at http://www.blackwell-synergy.com Saccular otolith mass asymmetry in adult flatfishes D. V. LYCHAKOV*†,Y.T.REBANE‡, A. LOMBARTE§, M. DEMESTRE§ AND L. A. FUIMANk *Sechenov Institute of Evolutionary Physiology and Biochemistry of Russian Academy of Sciences, St Petersburg, Thorez pr., 44, 194223, Russia, ‡Ioffe Physical Technical Institute of Russian Academy of Sciences, Politekhnicheskaya 26, St Petersburg 194021, Russia, §Departament de Recursos Marins Renovables, Institut de Cie`ncies del Mar-CMIMA (CSIC), Passeig Marıtim´ 37-49, 08003 Barcelona, Catalonia, Spain and kDepartment of Marine Science, University of Texas at Austin, Marine Science Institute, 750 Channel View Drive, Port Aransas, TX 78373-1267, U.S.A. (Received 29 June 2007, Accepted 20 February 2008) A dimensionless measure of otolith mass asymmetry, w, was calculated as the difference between the masses of the right and left paired otoliths divided by average otolith mass. Saccular otolith mass asymmetry was studied in eight flatfish species (110 otolith pairs) and compared with data from a previously published study on roundfishes. As in the case of symmetrical fishes, the absolute value of w in flatfishes does not depend on fish length and otolith growth rate, although otolith mass and the absolute value of otolith mass difference are correlated with fish length. The values of w were between À0Á2 and þ0Á2in96Á4% of flatfishes studied. The mean Æ S.E. value of w in flatfishes was significantly larger than in standard bilaterally symmetrical marine fishes (‘roundfishes’), respectively 0Á070 Æ 0Á006 and 0Á040 Æ 0Á006. -
ASSESSMENT of COASTAL WATER RESOURCES and WATERSHED CONDITIONS at CHANNEL ISLANDS NATIONAL PARK, CALIFORNIA Dr. Diana L. Engle
National Park Service U.S. Department of the Interior Technical Report NPS/NRWRD/NRTR-2006/354 Water Resources Division Natural Resource Program Centerent of the Interior ASSESSMENT OF COASTAL WATER RESOURCES AND WATERSHED CONDITIONS AT CHANNEL ISLANDS NATIONAL PARK, CALIFORNIA Dr. Diana L. Engle The National Park Service Water Resources Division is responsible for providing water resources management policy and guidelines, planning, technical assistance, training, and operational support to units of the National Park System. Program areas include water rights, water resources planning, marine resource management, regulatory guidance and review, hydrology, water quality, watershed management, watershed studies, and aquatic ecology. Technical Reports The National Park Service disseminates the results of biological, physical, and social research through the Natural Resources Technical Report Series. Natural resources inventories and monitoring activities, scientific literature reviews, bibliographies, and proceedings of technical workshops and conferences are also disseminated through this series. Mention of trade names or commercial products does not constitute endorsement or recommendation for use by the National Park Service. Copies of this report are available from the following: National Park Service (970) 225-3500 Water Resources Division 1201 Oak Ridge Drive, Suite 250 Fort Collins, CO 80525 National Park Service (303) 969-2130 Technical Information Center Denver Service Center P.O. Box 25287 Denver, CO 80225-0287 Cover photos: Top Left: Santa Cruz, Kristen Keteles Top Right: Brown Pelican, NPS photo Bottom Left: Red Abalone, NPS photo Bottom Left: Santa Rosa, Kristen Keteles Bottom Middle: Anacapa, Kristen Keteles Assessment of Coastal Water Resources and Watershed Conditions at Channel Islands National Park, California Dr. Diana L. -
Status of the Fisheries Report an Update Through 2008
STATUS OF THE FISHERIES REPORT AN UPDATE THROUGH 2008 Photo credit: Edgar Roberts. Report to the California Fish and Game Commission as directed by the Marine Life Management Act of 1998 Prepared by California Department of Fish and Game Marine Region August 2010 Acknowledgements Many of the fishery reviews in this report are updates of the reviews contained in California’s Living Marine Resources: A Status Report published in 2001. California’s Living Marine Resources provides a complete review of California’s three major marine ecosystems (nearshore, offshore, and bays and estuaries) and all the important plants and marine animals that dwell there. This report, along with the Updates for 2003 and 2006, is available on the Department’s website. All the reviews in this report were contributed by California Department of Fish and Game biologists unless another affiliation is indicated. Author’s names and email addresses are provided with each review. The Editor would like to thank the contributors for their efforts. All the contributors endeavored to make their reviews as accurate and up-to-date as possible. Additionally, thanks go to the photographers whose photos are included in this report. Editor Traci Larinto Senior Marine Biologist Specialist California Department of Fish and Game [email protected] Status of the Fisheries Report 2008 ii Table of Contents 1 Coonstripe Shrimp, Pandalus danae .................................................................1-1 2 Kellet’s Whelk, Kelletia kelletii ...........................................................................2-1 -
Can Fishing Gear Protect Non-Target Fish? Design and Evaluation of Bycatch Reduction Technology for Commercial Fisheries
Can fishing gear protect non-target fish? Design and evaluation of bycatch reduction technology for commercial fisheries by Brett Favaro B.Sc., Simon Fraser University, 2008 Thesis Submitted In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in the Department of Biological Sciences Faculty of Science Brett Favaro 2013 SIMON FRASER UNIVERSITY Summer 2013 1 Approval Name: Brett Favaro Degree: Doctor of Philosophy Title of Thesis: Can fishing gear protect non-target fish? Design and evaluation of bycatch reduction technology for commercial fisheries Examining Committee: Chair: Dr. Lance F.W. Lesack Professor Dr. Isabelle M. Côté Senior Supervisor, Professor Dr. Stefanie D. Duff Supervisor, Professor, Department of Fisheries and Aquaculture, Vancouver Island University Dr. John D. Reynolds Supervisor, Professor Dr. Lawrence M. Dill Internal Examiner, Professor Emeritus Dr. Selina Heppell External Examiner, Associate Professor, Department of Fisheries and Wildlife, Oregon State University Date Defended/Approved: May 9, 2013 ii Partial Copyright Licence iii Ethics Statement The author, whose name appears on the title page of this work, has obtained, for the research described in this work, either: a. human research ethics approval from the Simon Fraser University Office of Research Ethics, or b. advance approval of the animal care protocol from the University Animal Care Committee of Simon Fraser University; or has conducted the research c. as a co-investigator, collaborator or research assistant in a research project approved in advance, or d. as a member of a course approved in advance for minimal risk human research, by the Office of Research Ethics. A copy of the approval letter has been filed at the Theses Office of the University Library at the time of submission of this thesis or project. -
Why Are There So Many Flatfishes? Jaw Asymmetry, Diet, and Diversification in the Pleuronectiformes
Why are there so many flatfishes? Jaw asymmetry, diet, and diversification in the Pleuronectiformes Jonathan Chang1 Functional Morphology and Ecology of Fishes Summer 2014 1Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA. Contact information: Jonathan Chang 610 Charles E. Young Drive S Los Angeles CA 90095 [email protected] Keywords: flatfish, Pleuronectidae, Paralichthyidae, Bothidae, asymmetry, geometric morphometrics, comparative methods, functional morphology Chang 1 Abstract Flatfishes (Actinopterygii: Pleuronectiformes) are a diverse group of teleost fishes, with over 700 species in the order. Jaw asymmetry and diet have been thought to contribute to flatfish diversity but this has not yet been tested in a comparative framework. Here I use geometric morphometric and comparative methods to test whether ocular-blind side asymmetry in flatfish head morphology contributed to flatfish diversification. I find that the repeated convergent evolution of similar morphology, jaw function, and diet likely contribute to the high diversity of flatfishes. Introduction Pleuronectiform fishes are highly diverse, with over 700 described species (Froese and Pauly, 2014). These fishes are characterized by their unique bilateral asymmetry and their benthic ecology. Flatfishes also generally consume one of three main types of prey: buried infauna, pelagic fishes and crustaceans, and a third type intermediate to the first two (de Groot 1971, Tsuruta & Omori 1976). I hypothesize that this specialization into different prey types has driven the diversification and morphological disparity in asymmetry of flatfish species. Methods 12 species of flatfish comprising of 11 genera and 2 families (Table 1) were collected via trawl and seine at these sites: Jackson Beach, [48°31'13.0"N 123°00'35.1"W] and Orcas – Eastsound [48°38'26.9"N 122°52'14.0"W]. -
Pleuronectidae
FAMILY Pleuronectidae Rafinesque, 1815 - righteye flounders [=Heterosomes, Pleronetti, Pleuronectia, Diplochiria, Poissons plats, Leptosomata, Diprosopa, Asymmetrici, Platessoideae, Hippoglossoidinae, Psettichthyini, Isopsettini] Notes: Hétérosomes Duméril, 1805:132 [ref. 1151] (family) ? Pleuronectes [latinized to Heterosomi by Jarocki 1822:133, 284 [ref. 4984]; no stem of the type genus, not available, Article 11.7.1.1] Pleronetti Rafinesque, 1810b:14 [ref. 3595] (ordine) ? Pleuronectes [published not in latinized form before 1900; not available, Article 11.7.2] Pleuronectia Rafinesque, 1815:83 [ref. 3584] (family) Pleuronectes [senior objective synonym of Platessoideae Richardson, 1836; family name sometimes seen as Pleuronectiidae] Diplochiria Rafinesque, 1815:83 [ref. 3584] (subfamily) ? Pleuronectes [no stem of the type genus, not available, Article 11.7.1.1] Poissons plats Cuvier, 1816:218 [ref. 993] (family) Pleuronectes [no stem of the type genus, not available, Article 11.7.1.1] Leptosomata Goldfuss, 1820:VIII, 72 [ref. 1829] (family) ? Pleuronectes [no stem of the type genus, not available, Article 11.7.1.1] Diprosopa Latreille, 1825:126 [ref. 31889] (family) Platessa [no stem of the type genus, not available, Article 11.7.1.1] Asymmetrici Minding, 1832:VI, 89 [ref. 3022] (family) ? Pleuronectes [no stem of the type genus, not available, Article 11.7.1.1] Platessoideae Richardson, 1836:255 [ref. 3731] (family) Platessa [junior objective synonym of Pleuronectia Rafinesque, 1815, invalid, Article 61.3.2 Hippoglossoidinae Cooper & Chapleau, 1998:696, 706 [ref. 26711] (subfamily) Hippoglossoides Psettichthyini Cooper & Chapleau, 1998:708 [ref. 26711] (tribe) Psettichthys Isopsettini Cooper & Chapleau, 1998:709 [ref. 26711] (tribe) Isopsetta SUBFAMILY Atheresthinae Vinnikov et al., 2018 - righteye flounders GENUS Atheresthes Jordan & Gilbert, 1880 - righteye flounders [=Atheresthes Jordan [D. -
Parasiten Von Zackenbarschen Als Biologische Indikatoren in Südostasien: Anthropogene Verschmutzung Und Aquakulturverfahren
Parasiten von Zackenbarschen als biologische Indikatoren in Südostasien: Anthropogene Verschmutzung und Aquakulturverfahren Kumulative Dissertation zur Erlangung des akademischen Grades Doctor rerum naturalium (Dr. rer. nat.) an der Mathematisch-Naturwissenschaftlichen Fakultät der Universität Rostock vorgelegt von Kilian Neubert geboren am 07.06.1983 in Schwerin Rostock, 2018 Betreuer und erster Gutachter: Prof. Dr. rer. nat. habil. Harry W. Palm Professur für Aquakultur und Sea-Ranching, Universität Rostock Zweiter Gutachter: Prof. Dr. rer. nat. habil. Wilhelm Hagen Fachbereich 02: Biologie/Chemie, Universität Bremen Jahr der Einreichung: 2018 Jahr der Verteidigung: 2018 „First to doubt, then to inquire, and then to discover!” Henry Thomas Buckle Inhaltsverzeichnis 1. Zusammenfassende Darlegung ....................................................................... 1 1.1 Kurzfassung ....................................................................................................................... 1 1.1.1 Zusammenfassung ........................................................................................................ 1 1.1.2 Abstract ........................................................................................................................ 2 1.2 Einleitung ........................................................................................................................... 3 1.2.1 Parasitische Lebenszyklen als Grundlage der biologischen Umweltindikation ........... 3 1.2.2 Fischparasiten als biologische Indikatoren -
UNIVERSITY of CALIFORNIA Los Angeles Design and Implementation of Environmental DNA Metabarcoding Methods for Monitoring the So
UNIVERSITY OF CALIFORNIA Los Angeles Design and Implementation of Environmental DNA Metabarcoding Methods for Monitoring the Southern California Marine Protected Area Network A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Biology by Zachary Jacob Gold 2020 © Copyright by Zachary Jacob Gold 2020 ABSTRACT OF THE DISSERTATION Design and Implementation of Environmental DNA Metabarcoding Methods for Monitoring the Southern California Marine Protected Area Network by Zachary Jacob Gold Doctor of Philosophy in Biology University of California, Los Angeles, 2020 Professor Paul Barber, Chair Marine protected areas (MPAs) are important tools for maintaining biodiversity and abundance of marine species. However, key to the effectiveness of MPAs is monitoring of marine communities. Current monitoring methods rely heavily on SCUBA-based visual observations that are costly and time consuming, limiting the scope of MPA monitoring. Environmental DNA (eDNA) metabarcoding is a promising cost effective, rapid, and automatable alternative for marine ecosystem monitoring. However, as a developing tool, the utility of eDNA metabarcoding requires improved bioinformatic techniques and reference barcode databases. Furthermore, it is important to understand how eDNA metabarcoding performs relative to visual surveys to better understand the strengths and limitations of each approach. This thesis improves eDNA metabarcoding approaches to survey the nearshore rocky reef and kelp forest ecosystems within the Southern California MPA network. It then tests the effectiveness of eDNA metabarcoding against visual surveys conducted by the Channel Islands National Park Service ii Kelp Forest Monitoring Program and Reef Check California. In Chapter 1, I develop FishCARD, a 12S reference barcode database specific to fishes of the California Current ecosystem. -
XIV. Appendices
Appendix 1, Page 1 XIV. Appendices Appendix 1. Vertebrate Species of Alaska1 * Threatened/Endangered Fishes Scientific Name Common Name Eptatretus deani black hagfish Lampetra tridentata Pacific lamprey Lampetra camtschatica Arctic lamprey Lampetra alaskense Alaskan brook lamprey Lampetra ayresii river lamprey Lampetra richardsoni western brook lamprey Hydrolagus colliei spotted ratfish Prionace glauca blue shark Apristurus brunneus brown cat shark Lamna ditropis salmon shark Carcharodon carcharias white shark Cetorhinus maximus basking shark Hexanchus griseus bluntnose sixgill shark Somniosus pacificus Pacific sleeper shark Squalus acanthias spiny dogfish Raja binoculata big skate Raja rhina longnose skate Bathyraja parmifera Alaska skate Bathyraja aleutica Aleutian skate Bathyraja interrupta sandpaper skate Bathyraja lindbergi Commander skate Bathyraja abyssicola deepsea skate Bathyraja maculata whiteblotched skate Bathyraja minispinosa whitebrow skate Bathyraja trachura roughtail skate Bathyraja taranetzi mud skate Bathyraja violacea Okhotsk skate Acipenser medirostris green sturgeon Acipenser transmontanus white sturgeon Polyacanthonotus challengeri longnose tapirfish Synaphobranchus affinis slope cutthroat eel Histiobranchus bathybius deepwater cutthroat eel Avocettina infans blackline snipe eel Nemichthys scolopaceus slender snipe eel Alosa sapidissima American shad Clupea pallasii Pacific herring 1 This appendix lists the vertebrate species of Alaska, but it does not include subspecies, even though some of those are featured in the CWCS. -
A List of Common and Scientific Names of Fishes from the United States And
t a AMERICAN FISHERIES SOCIETY QL 614 .A43 V.2 .A 4-3 AMERICAN FISHERIES SOCIETY Special Publication No. 2 A List of Common and Scientific Names of Fishes -^ ru from the United States m CD and Canada (SECOND EDITION) A/^Ssrf>* '-^\ —---^ Report of the Committee on Names of Fishes, Presented at the Ei^ty-ninth Annual Meeting, Clearwater, Florida, September 16-18, 1959 Reeve M. Bailey, Chairman Ernest A. Lachner, C. C. Lindsey, C. Richard Robins Phil M. Roedel, W. B. Scott, Loren P. Woods Ann Arbor, Michigan • 1960 Copies of this publication may be purchased for $1.00 each (paper cover) or $2.00 (cloth cover). Orders, accompanied by remittance payable to the American Fisheries Society, should be addressed to E. A. Seaman, Secretary-Treasurer, American Fisheries Society, Box 483, McLean, Virginia. Copyright 1960 American Fisheries Society Printed by Waverly Press, Inc. Baltimore, Maryland lutroduction This second list of the names of fishes of The shore fishes from Greenland, eastern the United States and Canada is not sim- Canada and the United States, and the ply a reprinting with corrections, but con- northern Gulf of Mexico to the mouth of stitutes a major revision and enlargement. the Rio Grande are included, but those The earlier list, published in 1948 as Special from Iceland, Bermuda, the Bahamas, Cuba Publication No. 1 of the American Fisheries and the other West Indian islands, and Society, has been widely used and has Mexico are excluded unless they occur also contributed substantially toward its goal of in the region covered. In the Pacific, the achieving uniformity and avoiding confusion area treated includes that part of the conti- in nomenclature.