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PPPHE 2013 Endophytes for Plant Protection Persistent Identifier: urn:nbn:de:0294-sp-2013-ppphe-2 DPG Spectrum Phytomedizin C. Schneider, C. Leifert, F. Feldmann (eds.) Endophytes for plant protection: the state of the art Proceedings of the 5th International Symposium on Plant Protection and Plant Health in Europe held at the Faculty of Agriculture and Horticulture (LGF), Humboldt University Berlin, Berlin-Dahlem, Germany, 26-29 May 2013 jointly organised by the Deutsche Phytomedizinische Gesellschaft - German Society for Plant Protection and Plant Health (DPG) and the COST Action FA 1103 in co-operation with the Faculty of Agriculture and Horticulture (LGF), Humboldt University Berlin, and the Julius Kühn-Institut (JKI), Berlin, Germany Publisher Persistent Identifier: urn:nbn:de:0294-sp-2013-ppphe-2 Bibliografische Information der Deutschen Bibliothek Die Deutsche Bibliothek verzeichnet diese Publikation in der Deutschen Nationalbibliografie; Detaillierte bibliografische Daten sind im Internet über http://dnb.ddb.de abrufbar. ISBN: 978-3-941261-11-2 Das Werk einschließlich aller Teile ist urheberrechtlich geschützt. Jede kommerzielle Verwertung außerhalb der engen Grenzen des Urheberrechtsgesetzes ist ohne Zustimmung der Deutschen Phytomedizinischen Gesellschaft e.V. unzulässig und strafbar. Das gilt insbesondere für Vervielfältigungen, Übersetzungen, Mikroverfilmungen und die Einspeicherung und Verarbeitung in elektronischen Systemen. Die DPG gestattet die Vervielfältigung zum Zwecke der Ausbildung an Schulen und Universitäten. All rights reserved. No part of this publication may be reproduced for commercial purpose, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, without the prior permission of the copyright owner. DPG allows the reproduction for education purpose at schools and universities. © 2013 DPG Verlag Messeweg 11-12, 38104 Braunschweig Email: [email protected] Internet: www.phytomedizin.org Lectorate: Dr. Carolin Schneider, Dr. Carlo Leifert, Dr. Falko Feldmann Production: Dr. C. Carstensen, InterKulturIntern, Edenkoben Design (cover): C. Senftleben, Braunschweig Foto (cover): Dr. G. M. Kovács, D. G. Knapp (Eötvös Loránd Univ., Budapest, Hungary), Dr. G. Bills (Fundación MEDINA, Granada, Spain) Printed in Germany by Lebenshilfe Braunschweig gemeinnützige GmbH ii Persistent Identifier: urn:nbn:de:0294-sp-2013-ppphe-2 Contents Preface xii KEYNOTE 1 Challenges for endophyte research; the need to focus on food security 2 Leifert C SESSION 1 OCCURRENCE AND DIVERSITY OF ENDOPHYTES 3 Are persistent plant viruses novel endophytes? 4 Valverde R A; Navas-Castillo J Investigation of latent bacterial infections in callus cultures reveals new Paenibacillus species 10 Brinkmann Net al. Is the bacterial endophyte community, living in Glera (Vitis vinifera) plants, active in biocontrol? 12 Nigris S; Baldan E; Zottini M; Squartini A; Baldan B Role of root-infecting fungi in plant-plant interactions 17 Aguilar-Trigueros C; Rillig M C Studies into endophytes of potatoes 18 Spoelder J; Elsas Dv; Turkensteen L; Elzenga T Endophytic bacterial populations of potato plants 19 Franco C; Smith S Endophytic bacteria from weeds promote growth of tomato plants in vitro and in greenhouse 27 Haddad N; Krimi Z; Raio A Incidence and identification of endophytes Epichloë/Neotyphodium in wild populations of Lolium perenne 33 Soto-Barajas M C; Gómez J; Vázquez de Aldana B R; Zabalgogeazcoa I Diversity of endophytic fungi in irrigated and upland rice ecosystems in Kenya 39 Pili N; Mibey R; Kyndt T; França S; Höfte M; Gheysen G Endophytic fungi in higher plants in Kyrgyzstan 40 Bobushova S SESSION 2 ECOLOGY OF ENDOPHYTES 41 Metagenomics and genomics to reveal the ecology and functional potential of bacterial endophyte communities 42 Sessitsch A; Mitter B; Weilharter A; Reinhold-Hurek B; Hardoim P; Compant S; Nikolic B; Krstevska E; v. Overbeek L; Chain PG; Trognitz F; van Elsas JD; Brader G iii Persistent Identifier: urn:nbn:de:0294-sp-2013-ppphe-2 Halotolerant microorganisms associated with the plants in saline soil 43 Szymanska S; Piernik A; Hrynkiewicz K Leaf-inhabiting endophytic fungi of European Beech (Fagus sylvatica L.) are rare in leaf litter and decaying wood of the same host. 44 Unterseher M; Peršoh D Factors affecting disease suppression of plant associated bacteria towards bottom rot on lettuce and the indigenous microbial rhizosphere community 45 Grosch R; Schreiter S; Zimmerling U; Zocher P; Smalla K New endophytic species from the phloem of broadleaf trees 47 Kolařík M; Stodůlková E; Kubátová A; Pažoutová S Association of the loose smuts of wheat and barley with fusaria and Acremonium-like fungi 53 Koch E; Zink P; Büssers J; Gossmann M SESSION 3 HOST-ENDOPHYTE INTERACTIONS 55 Association of plant damage with increased populations of deleterious endophytes following use of Benlate systemic fungicide 56 Kloepper JW; McInroy JA; and Hu C-H Structural and functional genomics of plant-associated Bacillus strains used for biocontrol of plant diseases 70 Borriss R Arabidopsis thaliana and its natural endophytes: a model system for the study of the ecological and molecular factors involved in endophytic interactions 71 García E; Ramos B; Alonso A; Platas G; Sacristán S Proteomic Analysis in Arabidopsis thaliana inoculated with a beneficial endophytic Streptomyces sp. in response to a challenge by the pathogen Fusarium oxysporum 78 Bernardo K T; Franco C M M; Chataway T Priming of potato leaves with the endophyte Burkholderia phytofirmans PsJN and its lipopolysaccharides 88 Trognitz F; Mitter B; Molinaro A; Hubalek V; Sessitsch A Analysis of the impact of viral infection on endophytic microorganisms in potato 93 Kogovšek P; Gostinčar C; Gunde-Cimerman N; Ravnikar M Occurrence of endophytes during Pelargonium protoplast culture 94 Klocke E; Weinzierl K; Abel S Complete genome sequence of a plant growth promoting and crop protective strain of Bacillus atrophaeus UCMB-5137 100 Reva O; Chan W Y; Lapa S; Borriss R Fungal Infection in Barley Roots – Friend and Foe 102 Murphy B Characterization of type B trichothecenes as bioactive secondary metabolites of Microcyclospora tardicrescens (Capnodiales, Ascomycota) 117 Medjedović A; Szczygielski M; Surup F; Schroers H-J; Stadler M iv Persistent Identifier: urn:nbn:de:0294-sp-2013-ppphe-2 Actinomycetes modulate carbon metabolism to provide protection against gray mould 118 Vatsa P; Ouhdouch Y; Clément C; Ait-Barka E Interaction between Burkholderia phytofirmans and grapevine: link between modula- tion of carbohydrate metabolism and induced tolerance to low temperatures 119 Fernandez O; Theocharis A; Bordiec S; Feil R; Dhont-Cordelier S; Bailleuil F; Clément C; Fontaine F; Ait Barka E The role of short chain AHLs and structurally similar molecules in barley 120 Rankl S; Schröder P Emission of volatile organic compounds by perennial ryegrass (Lolium perenne L.) / Neotyphodium lolii association as a defense reaction towards infection by Fusarium poae and Rhizoctonia solani 121 Pańka D; Piesik D; Jeske M; Musiał N; Koczwara K Effect of Neotyphodium lolii on production of β-1,3-glucanases and chitinases in perennial ryegrass (Lolium perenne L.) infected by Fusarium poae 123 Koczwara K; Pańka D; Jeske M; Musiał N Production of phenolic compounds by perennial ryegrass (Lolium perenne L.) / Neotyphodium lolii association as a defense reaction towards infection by Fusarium poae and Rhizoctonia solani 124 Pańka D; Jeske M; Musiał N; Koczwara K; Juda M Analysis of subcellular accumulation of cadmium (Cd) by metal tolerant bacteria using transmission electron microscopy (TEM) with energy-dispersive X-ray microanalysis (EDS) 126 Złoch M; Niedojadło K; Kowalkowski T; Hrynkiewicz K Plant-mediated effects on antagonistic activity of endophytic fungi towards olive fungal diseases 127 Martins F; Pereira JA; Bento A; Baptista P SESSION 4 CULTIVATION OF ENDOPHYTES 129 Cultivation of hitherto uncultured bacteria living is association with plants 129 van Overbeek L New methods for cultivation of uncultivables 130 Aoi Y Microcultivation of single cell bacteria in alginate microbeas 132 Aragão Börner R A; Alvarez Aliaga M T; Mattiasson B Development of a novel fermentation process for an endophytic Beauveria bassiana strain 134 Lohse R; Jakobs-Schönwandt D; Patel AV Bacteria associated with plant tissue culture: differences between well and poorly growing Prunus avium genotypes. 140 Quambusch M; Winkelmann T; Bartsch M Bacterial endophytes in wheat (Triticum aestivum): isolation, characterisation and bio-prospecting 141 Robinson R; Mauchline T; Hirsch P; Jackson R; Frost H; Fraaije B v Persistent Identifier: urn:nbn:de:0294-sp-2013-ppphe-2 SESSION 5 ENDOPHYTES FOR PLANT PROTECTION AND PRODUCTION 143 Biological management of plant parasitic nematodes using fungal and bacterial endophytes – past, present, and future 144 Sikora R A Interaction between the endophytic Methylobacterium, host plant and its microbiome with respect to the plant fitness 149 Ardanov P; Häggman H; Kozyrovska N; Pirttilä A M Fungal endophytes reduce necrosis length produced by Gremmeniella abietina in Pinus halepensis seedlings 150 Romeralo C; Botella L; Santamaría O; Díez J J Development of spray formulations for an endophytic Beauveria bassiana strain 156 Jakobs-Schönwandt D; Lohse R; Patel A V Differences in endophytes diversity among grapefruit (Citrus paradisi) trees irrigated with fresh water compared to treated sewage water. 157 Ezra D; Grinberg M The entomopathogenic fungus Beauveria
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