Coralline Red Algae from the Silurian of Gotland Indicate That the Order Corallinales (Corallinophycidae, Rhodophyta) Is Much Older Than Previously Thought
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A Taxonomic Account of Non-Geniculate Coralline Algae (Corallinophycidae, Rhodophyta) from Shallow Reefs of the Abrolhos Bank, Brazil
Research Article Algae 2016, 31(4): 317-340 https://doi.org/10.4490/algae.2016.31.11.16 Open Access A taxonomic account of non-geniculate coralline algae (Corallinophycidae, Rhodophyta) from shallow reefs of the Abrolhos Bank, Brazil Michel B. Jesionek1, Ricardo G. Bahia1, Jazmín J. Hernández-Kantún2, Walter H. Adey2, Yocie Yoneshigue-Valentin3, Leila L. Longo4 and Gilberto M. Amado-Filho1,* ¹Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisa Científica, Rua Pacheco Leão 915, Rio de Janeiro, RJ 22460-030, Brazil ²Department of Botany, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, USA ³Departamento de Botânica, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Av. Carlos Chagas Filho 373, Rio de Janeiro, RJ 21941-902, Brazil 4Departamento de Oceanografia e Ecologia, Universidade Federal do Espírito Santo, Vitória, ES 29075-910, Brazil The Abrolhos Continental Shelf (ACS) encompasses the largest and richest coral reefs in the southern Atlantic Ocean. A taxonomic study of non-geniculate coralline algae (NGCA) from the region was undertaken using both morpho-ana- tomical and molecular data. Specimens of NGCA were collected in 2012 and 2014 from shallow reefs of the ACS. Phylo- genetic analysis was performed using dataset of psbA DNA sequences from 16 specimens collected in the ACS and ad- ditional GenBank sequences of related NGCA species. Nine common tropical reef-building NGCA species were identified and described: Hydrolithon boergesenii, Lithophyllum kaiseri, Lithophyllum sp., Lithothamnion crispatum, Melyvonnea erubescens, Pneophyllum conicum, Porolithon onkodes, Sporolithon ptychoides, and Titanoderma prototypum. A key for species identification is also provided in this study. -
Mitochondrial and Plastid Genomes from Coralline Red Algae Provide Insights Into the Incongruent Evolutionary Histories of Organelles
GBE Mitochondrial and Plastid Genomes from Coralline Red Algae Provide Insights into the Incongruent Evolutionary Histories of Organelles JunMoLee1, Hae Jung Song1, Seung In Park1,YuMinLee1, So Young Jeong2,TaeOhCho2,JiHeeKim3, Han-Gu Choi3, Chang Geun Choi4, Wendy A. Nelson5,6, Suzanne Fredericq7, Debashish Bhattacharya8,and Hwan Su Yoon1,* 1Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea 2Department of Marine Life Science, Chosun University, Gwangju, Korea 3Division of Life Sciences, Korea Polar Research Institute, KOPRI, Incheon, Korea 4Department of Ecological Engineering, Pukyong National University, Busan, Korea 5National Institute for Water and Atmospheric Research, Wellington, New Zealand 6School of Biological Sciences, University of Auckland, New Zealand 7Biology Department, University of Louisiana at Lafayette, Lafayette, Louisiana 8Department of Biochemistry and Microbiology, Rutgers University *Corresponding author: E-mail: [email protected]. Accepted: September 27, 2018 Data deposition: All plastid genome sequences have been deposited as GenBank under Accession Numbers MH281621–MH281630. Abstract Mitochondria and plastids are generally uniparentally inherited and have a conserved gene content over hundreds of millions of years, which makes them potentially useful phylogenetic markers. Organelle single gene-based trees have long been the basis for elucidating interspecies relationships that inform taxonomy. More recently, high-throughput genome sequencing has enabled the construction of massive organelle -
First Record of Sporolithon Ptychoides Heydrich (Sporolithales, Corallinophycidae, Rhodophyta) from Thailand
Cryptogamie, Algologie, 2012, 33 (3): 265-276 ©2012 Adac. Tous droits réservés First record of Sporolithon ptychoides Heydrich (Sporolithales, Corallinophycidae, Rhodophyta) from Thailand Chatcharee KAEWSURALIKHIT a, b*,Sinchai MANEEKAT a, Thidarat NOIRAKSA c,Sunan PATARAJINDA d &Masasuke BABA e a Department of Fishery Biology, Faculty of Fisheries, Kasetsart University, Chatujak, Bangkok 10900, Thailand b Center for Advanced Studies in Agriculture and Food, KU Institute for Advanced Studies, Kasetsart University, Bangkok 10900, Thailand c Institute of Marine Science, Burapha University, Chonburi 20131, Thailand d Department of Marine Science, Faculty of Fisheries, Kasetsart University, Chatujak, Bangkok 10900, Thailand e Demonstration Laboratory, Marine Ecology Research Institute, 945-0017, Niigata Pref. Japan Abstract – Sporolithon ptychoides Heydrich (Sporolithaceae, Sporolithales), the type species of the genus Sporolithon, is newly reported for Thai waters based on specimens collected from the Gulf of Thailand and the Andaman Sea. Adetailed morphological and anatomical account is provided, including comparisons with published data of S. ptychoides and its related species. Epithallial cells are flared. Cells of adjacent filaments connect laterally mostly by secondary pit connections. Tetrasporangia are grouped in sori that occur in patches over the thallus surface. Sori are buried in distinct rows in the thallus. Details of male, female and carposporangial conceptacles of S. ptychoides are described for the first time. Gametangial thalli are monoecious with spermatangia and carposporangia born in uniporate conceptacles. Dendroid spermatangial branches occur on the floor, walls and roof of the male conceptacle chamber. Carpogonial branch consists of ahypogenous cell and a carpogonium. Central fusion cell is absent on the floor of the carposporangial conceptacle chamber. -
A Morphological and Phylogenetic Study of the Genus Chondria (Rhodomelaceae, Rhodophyta)
Title A morphological and phylogenetic study of the genus Chondria (Rhodomelaceae, Rhodophyta) Author(s) Sutti, Suttikarn Citation 北海道大学. 博士(理学) 甲第13264号 Issue Date 2018-06-29 DOI 10.14943/doctoral.k13264 Doc URL http://hdl.handle.net/2115/71176 Type theses (doctoral) File Information Suttikarn_Sutti.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP A morphological and phylogenetic study of the genus Chondria (Rhodomelaceae, Rhodophyta) 【紅藻ヤナギノリ属(フジマツモ科)の形態学的および系統学的研究】 Suttikarn Sutti Department of Natural History Sciences, Graduate School of Science Hokkaido University June 2018 1 CONTENTS Abstract…………………………………………………………………………………….2 Acknowledgement………………………………………………………………………….5 General Introduction………………………………………………………………………..7 Chapter 1. Morphology and molecular phylogeny of the genus Chondria based on Japanese specimens……………………………………………………………………….14 Introduction Materials and Methods Results and Discussions Chapter 2. Neochondria gen. nov., a segregate of Chondria including N. ammophila sp. nov. and N. nidifica comb. nov………………………………………………………...39 Introduction Materials and Methods Results Discussions Conclusion Chapter 3. Yanagi nori—the Japanese Chondria dasyphylla including a new species and a probable new record of Chondria from Japan………………………………………51 Introduction Materials and Methods Results Discussions Conclusion References………………………………………………………………………………...66 Tables and Figures 2 ABSTRACT The red algal tribe Chondrieae F. Schmitz & Falkenberg (Rhodomelaceae, Rhodophyta) currently -
Sequencing Type Material Resolves the Identity and Distribution of the Generitype Lithophyllum Incrustans, and Related European Species L
J. Phycol. 51, 791–807 (2015) © 2015 Phycological Society of America DOI: 10.1111/jpy.12319 SEQUENCING TYPE MATERIAL RESOLVES THE IDENTITY AND DISTRIBUTION OF THE GENERITYPE LITHOPHYLLUM INCRUSTANS, AND RELATED EUROPEAN SPECIES L. HIBERNICUM AND L. BATHYPORUM (CORALLINALES, RHODOPHYTA)1 Jazmin J. Hernandez-Kantun2 Botany Department, National Museum of Natural History, Smithsonian Institution, MRC 166 PO Box 37012, Washington District of Columbia, USA Irish Seaweed Research Group, Ryan Institute, National University of Ireland, University Road, Galway Ireland Fabio Rindi Dipartimento di Scienze della Vita e dell’Ambiente, Universita Politecnica delle Marche, Via Brecce Bianche, Ancona 60131, Italy Walter H. Adey Botany Department, National Museum of Natural History, Smithsonian Institution, MRC 166 PO Box 37012, Washington District of Columbia, USA Svenja Heesch Irish Seaweed Research Group, Ryan Institute, National University of Ireland, University Road, Galway Ireland Viviana Pena~ BIOCOST Research Group, Departamento de Bioloxıa Animal, Bioloxıa Vexetal e Ecoloxıa, Facultade de Ciencias, Universidade da Coruna,~ Campus de A Coruna,~ A Coruna~ 15071, Spain Equipe Exploration, Especes et Evolution, Institut de Systematique, Evolution, Biodiversite, UMR 7205 ISYEB CNRS, MNHN, UPMC, EPHE, Museum National d’Histoire Naturelle (MNHN), Sorbonne Universites, 57 rue Cuvier CP 39, Paris 75005, France Phycology Research Group, Ghent University, Krijgslaan 281, Building S8, Ghent 9000, Belgium Line Le Gall Equipe Exploration, Especes et Evolution, Institut de Systematique, Evolution, Biodiversite, UMR 7205 ISYEB CNRS, MNHN, UPMC, EPHE, Museum National d’Histoire Naturelle (MNHN), Sorbonne Universites, 57 rue Cuvier CP 39, Paris 75005, France and Paul W. Gabrielson Department of Biology and Herbarium, University of North Carolina, Chapel Hill, Coker Hall CB 3280, Chapel Hill, North Carolina 27599-3280, USA DNA sequences from type material in the belonging in Lithophyllum. -
Integrating Phylogeny, Molecular Clocks, and the Fossil Record in the Evolution of Coralline Algae (Corallinales and Sporolithales, Rhodophyta)
Paleobiology, 36(4), 2010, pp. 519–533 Integrating phylogeny, molecular clocks, and the fossil record in the evolution of coralline algae (Corallinales and Sporolithales, Rhodophyta) Julio Aguirre, Francisco Perfectti, and Juan C. Braga Abstract.—When assessing the timing of branching events in a phylogeny, the most important tools currently recognized are a reliable molecular phylogeny and a continuous, relatively complete fossil record. Coralline algae (Rhodophyta, Corallinales, and Sporolithales) constitute an ideal group for this endeavor because of their excellent fossil record and their consistent phylogenetic reconstructions. We present the evolutionary history of the corallines following a novel, combined approach using their fossil record, molecular phylogeny (based on the 18S rDNA gene sequences of 39 coralline species), and molecular clocks. The order of appearance of the major monophyletic taxa of corallines in the fossil record perfectly matches the sequence of branching events in the phylogeny. We were able to demonstrate the robustness of the node ages in the phylogeny based on molecular clocks by performing an analysis of confidence intervals and maximum temporal ranges of three monophyletic groups of corallines (the families Sporolithaceae and Hapalidiaceae, as well as the subfamily Lithophylloideae). The results demonstrate that their first occurrences are close to their observed appearances, a clear indicator of a very complete stratigraphic record. These chronological data are used to confidently constrain the ages of the remaining branching events in the phylogeny using molecular clocks. Julio Aguirre and Juan C. Braga. Department of Stratigraphy and Paleontology, University of Granada, Fuentenueva s/n, 18002, Granada, Spain. E-mail: [email protected], [email protected] Francisco Perfectti. -
Mitochondrial and Plastid Genomes from Coralline Red Algae Provide
GBE Mitochondrial and Plastid Genomes from Coralline Red Algae Provide Insights into the Incongruent Evolutionary Histories Downloaded from https://academic.oup.com/gbe/article-abstract/10/11/2961/5145068 by SUNG KYUN KWAN UNIV SCIENCE LIB user on 21 November 2018 of Organelles JunMoLee1, Hae Jung Song1, Seung In Park1,YuMinLee1, So Young Jeong2,TaeOhCho2,JiHeeKim3, Han-Gu Choi3, Chang Geun Choi4, Wendy A. Nelson5,6, Suzanne Fredericq7, Debashish Bhattacharya8,and Hwan Su Yoon1,* 1Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea 2Department of Marine Life Science, Chosun University, Gwangju, Korea 3Division of Life Sciences, Korea Polar Research Institute, KOPRI, Incheon, Korea 4Department of Ecological Engineering, Pukyong National University, Busan, Korea 5National Institute for Water and Atmospheric Research, Wellington, New Zealand 6School of Biological Sciences, University of Auckland, New Zealand 7Biology Department, University of Louisiana at Lafayette, Lafayette, Louisiana 8Department of Biochemistry and Microbiology, Rutgers University *Corresponding author: E-mail: [email protected]. Accepted: September 27, 2018 Data deposition: All plastid genome sequences have been deposited as GenBank under Accession Numbers MH281621–MH281630. Abstract Mitochondria and plastids are generally uniparentally inherited and have a conserved gene content over hundreds of millions of years, which makes them potentially useful phylogenetic markers. Organelle single gene-based trees have long been the basis for elucidating interspecies relationships that inform taxonomy. More recently, high-throughput genome sequencing has enabled the construction of massive organelle genome databases from diverse eukaryotes, and these have been used to infer species relationships in deep evolutionary time. Here, we test the idea that despite their expected utility, conflicting phylogenetic signal may exist in mitochondrial and plastid genomes from the anciently diverged coralline red algae (Rhodophyta). -
Geologia Croaticacroatica
View metadata, citationGeologia and similar Croatica papers at core.ac.uk 61/2–3 333–340 1 Fig. 1 Pl. Zagreb 2008 333brought to you by CORE The coralline fl ora of a Miocene maërl: the Croatian “Litavac” Daniela Basso1, Davor Vrsaljko2 and Tonći Grgasović3 1 Dipartamento di Scienze Geologiche e Geotecnologie, Università degli Studi di Milano – Bicocca, Piazza della Scienza 4, 20126 Milano, Italy; ([email protected]) 2 Croatian Natural History Museum, Demetrova 1, HR-10000 Zagreb, Croatia; ([email protected]) 3 Croatian Geological Survey, Sachsova 2, HR-10000 Zagreb, Croatia; ([email protected]) GeologiaGeologia CroaticaCroatica AB STRA CT The fossil coralline fl ora of the Badenian bioclastic limestone outcropping in Northern Croatia is known by the name “Litavac”, shortened from “Lithothamnium Limestone”. The name was given to indicate that unidentifi ed coralline algae are the major component. In this fi rst contribution to the knowledge of the coralline fl ora of the Litavac, Lithoth- amnion valens seems to be the most common species, with an unattached, branched growth-form. Small rhodoliths composed of Phymatolithon calcareum and Mesophyllum roveretoi also occur. The Badenian benthic association is dominated by melobesioid corallines, thus it can be compared with the modern maërl facies of the Atlantic Ocean and Mediterranean Sea. Since L. valens still survives in the present-day Mediterranean, an analogy between the Badenian Litavac and the living L. valens facies of the Mediterranean is suggested. Keywor ds: calcareous Rhodophyta, Corallinales, rhodoliths, maërl, Badenian, Croatia 1. INTRODUCTION an overlying facies of fi ne-graded clastics: fi ne-graded sands, marls, clayey limestones and calcsiltites (VRSALJKO et al., Since Roman times, a building stone named “Litavac” has 2006, 2007a). -
Boron-Containing Organic Pigments from a Jurassic Red Alga
Boron-containing organic pigments from a Jurassic red alga Klaus Wolkensteina,1, Jürgen H. Grossb, and Heinz Falkc aInstitute of Analytical Chemistry, Johannes Kepler University Linz, 4040 Linz, Austria; bInstitute of Organic Chemistry, University of Heidelberg, 69120 Heidelberg, Germany; and cInstitute of Organic Chemistry, Johannes Kepler University Linz, 4040 Linz, Austria Edited by Victoria J. Orphan, California Institute of Technology, Pasadena, CA, and accepted by the Editorial Board September 23, 2010 (received for review June 10, 2010) Organic biomolecules that have retained their basic chemical oxide (DMSO). The reddish-colored extracts were purified by structures over geological periods (molecular fossils) occur in a wide solid-phase extraction and characterized by HPLC–diode array range of geological samples and provide valuable paleobiological, detection–electrospray ionization–mass spectrometry (HPLC- paleoenvironmental, and geochemical information not attainable DAD-ESI-MS). From a large Solenopora sample (102.5 g) from from other sources. In rare cases, such compounds are even France, 1.1 mg of crude pigment isolate was obtained as an in- preserved with their specific functional groups and still occur within tensely crimson-colored organic residue (Fig. S1). HPLC analysis the organisms that produced them, providing direct information on of the pigments revealed numerous compounds with similar UV- the biochemical inventory of extinct organisms and their possible visible spectra, with the prominent group at retention time of evolutionary relationships. Here we report the discovery of an 8.0–10.0 min showing a major broad absorption band at 520 nm exceptional group of boron-containing compounds, the borolitho- and a minor one at 420 nm (Fig. -
An Account of Common Crustose Coralline Algae
D.I. Walker and F.E. Wells (Eds) 1999. The Seagrass Flora and Fauna of Rottnest Island, Western Australia. Western Australian Museum, Perth. CORE An account of common crustose coralline algae Metadata, citation and similar papers at core.ac.uk Provided(Corallinales, by Research Repository Rhodophyta) from macrophyte communities at Rottnest Island, Western Australia. by C.B. Sim Department of Botany, University of Western Australia, Nedlands, 6907, Western Australia and "' R.A. Townsend School of Biological Sciences and Biotechnology, Division of Science and Engineering, Murdoch University, Murdoch 6150, Western Australia ABSTRACT Meaningful interpretation of ecological experimentation can only be made after knowledge of the floral composition of an area is known. Crustose coralline algae have a reputation among phycologists as being a difficult group of organisms to identify to species level. Crustose coralline algae (Corallinales, Rhodophyta) cover the substratum in most macrophyte communities; their ecology is poorly understood. The aim of this work was to develop a species list and generic key for crustose coralline algae found in macrophyte communities around Rottnest Island, Western Australia. Eleven species belonging to seven genera were identified from limestone substrata in kelp and mixed macroalgal communities. A key to the common genera of crustose coralline algae found in these communities is also provided. The key, aimed at ecologists with limited knowledge of coralline taxonomy and anatomy, uses gross external and easily recognisable internal characters. The crustose coralline algal flora of Rottnest Island is a mixture of Indo-West Pacific and southern temperate species. Species such as Hydrolithon onkodes which has an extensive tropical and subtropical range were found at most sites sampled. -
It Was Recognized During Geological Excursions in the Bükk Mountains
NEWER LIME-SECRETING ALGAE FROM THE MIDDLE CARBONIFEROUS OF THE BÜKK MOUNTAINS, NORTHERN HUNGARY M. NEMETH INTRODUCTION It was recognized during geological excursions in the Bükk Mountains that certain limestone lenses of the Upper Moscovian shale sequence yield other calcareous algae than those dasycladaceans (Vermiporella sp., Anthracoporella sp., A. spectabilis PIA and Dvinella comata CHVOROVA) described previously by HERAK, M. and Ko- CHANSKY, V. [1963]. From limestone samples came from the No. 1 railway cutting of Nagyvisnyó, from the eastern side of the Bánvölgy (NW to the Dédes Castle), from the southern vicinity of the village Mályinka, from Kapubérc, from western side of the summit of Tarófő and from deeper part of the main lens of Nagyberenás the forms of the genera Archaeolithophyllum, Ivanovia, Oligoporellal and Osagia have been recognized. The first two genera belong into the phylloid algae of PRAY, L, C. and WRAY, J. L. [1963]. The genus Macroporella is classed among the family Dasydadaceae, while the Osagia is a crustose calcareous alga of uncertain systemat- ic position. Most interesting are the phylloid algae, which are similar in shape and size to leaves and are slightly or strongerly wavy, in spite of the morphological similarity that suggested by their common name, these are forms of different groups (e.g. green or red algae). This group was named by American authors, because these phylloid algae are abundant, occasionally in rock-forming quantity in the Middle and Upper Carboniferous (Pennsylvanián) and Lower Permian of the USA. On the other hand, the preservation of the cavities between the wavy plates of these algae pro- motes significantly the formation of hydrocarbon traps within the embedding rocks. -
Keynote and Oral Papers1. Algal Diversity and Species Delimitation
European Journal of Phycology ISSN: 0967-0262 (Print) 1469-4433 (Online) Journal homepage: http://www.tandfonline.com/loi/tejp20 Keynote and Oral Papers To cite this article: (2015) Keynote and Oral Papers, European Journal of Phycology, 50:sup1, 22-120, DOI: 10.1080/09670262.2015.1069489 To link to this article: http://dx.doi.org/10.1080/09670262.2015.1069489 Published online: 20 Aug 2015. Submit your article to this journal Article views: 76 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tejp20 Download by: [University of Kiel] Date: 22 September 2015, At: 02:13 Keynote and Oral Papers 1. Algal diversity and species delimitation: new tools, new insights 1KN.1 1KN.2 HOW COMPLEMENTARY BARCODING AND GENERATING THE DIVERSITY - POPULATION GENETICS ANALYSES CAN UNCOVERING THE SPECIATION HELP SOLVE TAXONOMIC QUESTIONS AT MECHANISMS IN FRESHWATER AND SHORT PHYLOGENETIC DISTANCES: THE TERRESTRIAL MICROALGAE EXAMPLE OF THE BROWN ALGA Š PYLAIELLA LITTORALIS Pavel kaloud ([email protected]) Christophe Destombe1 ([email protected]), Department of Botany, Charles Univrsity in Prague, Alexandre Geoffroy1 ([email protected]), Prague 12801, Czech Republic Line Le Gall2 ([email protected]), Stéphane Mauger3 ([email protected]) and Myriam Valero4 Species are one of the fundamental units of biology, ([email protected]) comparable to genes or cells. Understanding the general patterns and processes of speciation can facilitate the 1Station Biologique de Roscoff, Sorbonne Universités, formulation and testing of hypotheses in the most impor- Université Pierre et Marie Curie, CNRS, Roscoff tant questions facing biology today, including the fitof 29688, France; 2Institut de Systématique, Evolution, organisms to their environment and the dynamics and Biodiversité, UMR 7205 CNRS-EPHE-MNHN-UPMC, patterns of organismal diversity.