Memoirs of the California Academy of Sciences Number 13
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Proteomic Analysis of the Venom of Jellyfishes Rhopilema Esculentum and Sanderia Malayensis
marine drugs Article Proteomic Analysis of the Venom of Jellyfishes Rhopilema esculentum and Sanderia malayensis 1, 2, 2 2, Thomas C. N. Leung y , Zhe Qu y , Wenyan Nong , Jerome H. L. Hui * and Sai Ming Ngai 1,* 1 State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China; [email protected] 2 Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China; [email protected] (Z.Q.); [email protected] (W.N.) * Correspondence: [email protected] (J.H.L.H.); [email protected] (S.M.N.) Contributed equally. y Received: 27 November 2020; Accepted: 17 December 2020; Published: 18 December 2020 Abstract: Venomics, the study of biological venoms, could potentially provide a new source of therapeutic compounds, yet information on the venoms from marine organisms, including cnidarians (sea anemones, corals, and jellyfish), is limited. This study identified the putative toxins of two species of jellyfish—edible jellyfish Rhopilema esculentum Kishinouye, 1891, also known as flame jellyfish, and Amuska jellyfish Sanderia malayensis Goette, 1886. Utilizing nano-flow liquid chromatography tandem mass spectrometry (nLC–MS/MS), 3000 proteins were identified from the nematocysts in each of the above two jellyfish species. Forty and fifty-one putative toxins were identified in R. esculentum and S. malayensis, respectively, which were further classified into eight toxin families according to their predicted functions. Amongst the identified putative toxins, hemostasis-impairing toxins and proteases were found to be the most dominant members (>60%). -
Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
Poison Dart Frogs of the Genus Phyllobates Secrete Lipophilic Alkaloid
Cloning and Sequence Analysis of the Voltage-Gated Muscle Na + Channel from the Poison Dart Frog Phyllobates aurotaenia . Castano, S. 1, 2 , Frezza, L. 1, Labro, A. 3, Fierro, L. 2, Bezanilla, F. 1, Correa, A.M. 1 1The University of Chicago, Chicago, IL, USA. 1Grupo de Biología Integrativa (BINTE), Escuela de Ciencias Básicas, Facultad de Salud, Universidad del Valle. 3University of Antwerp, Wilrijk, Belgium. Poison dart frogs of the genus Phyllobates secrete lipophilic alkaloid toxins through their skin that were used by Colombian Amerindians to poison the tips of blowdarts. One of the most potent toxins identified is batrachotoxin (BTX) which is an activator of voltage-gated Na+ channels. BTX causes sustained opening of these channels by shifting the voltage-dependent activation to more hyperpolarized potentials and by disabling both fast and slow inactivation. It also alters pore conductance and selectivity. Endogenous Na+ channels of the poison arrow frog have been proposed to be insensitive to lethal amounts of BTX. In this project we aim to identify what confers BTX insensitivity to Na+ channels of the host frog Phyllobates aurotaenia, therefore we cloned its skeletal muscle NaV channel. Total RNA from skeletal muscle of Phyllobates aurotaenia was isolated and cDNA was obtained with degenerate primers. The 1819 amino acids sequence shares 72% sequence identity with the rat Na+ channel NaV1.4, and 73% with that of the snake Thamnophis sirtalis. The TMs are extremely well conserved (87%) with absolute conservation of S4 in all domains. The N-and C- termini as well as the cytoplasmic linkers between domains are more divergent. -
Pelagia Benovici Sp. Nov. (Cnidaria, Scyphozoa): a New Jellyfish in the Mediterranean Sea
Zootaxa 3794 (3): 455–468 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3794.3.7 http://zoobank.org/urn:lsid:zoobank.org:pub:3DBA821B-D43C-43E3-9E5D-8060AC2150C7 Pelagia benovici sp. nov. (Cnidaria, Scyphozoa): a new jellyfish in the Mediterranean Sea STEFANO PIRAINO1,2,5, GIORGIO AGLIERI1,2,5, LUIS MARTELL1, CARLOTTA MAZZOLDI3, VALENTINA MELLI3, GIACOMO MILISENDA1,2, SIMONETTA SCORRANO1,2 & FERDINANDO BOERO1, 2, 4 1Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, 73100 Lecce, Italy 2CoNISMa, Consorzio Nazionale Interuniversitario per le Scienze del Mare, Roma 3Dipartimento di Biologia e Stazione Idrobiologica Umberto D’Ancona, Chioggia, Università di Padova. 4 CNR – Istituto di Scienze Marine, Genova 5Corresponding authors: [email protected], [email protected] Abstract A bloom of an unknown semaestome jellyfish species was recorded in the North Adriatic Sea from September 2013 to early 2014. Morphological analysis of several specimens showed distinct differences from other known semaestome spe- cies in the Mediterranean Sea and unquestionably identified them as belonging to a new pelagiid species within genus Pelagia. The new species is morphologically distinct from P. noctiluca, currently the only recognized valid species in the genus, and from other doubtful Pelagia species recorded from other areas of the world. Molecular analyses of mitochon- drial cytochrome c oxidase subunit I (COI) and nuclear 28S ribosomal DNA genes corroborate its specific distinction from P. noctiluca and other pelagiid taxa, supporting the monophyly of Pelagiidae. Thus, we describe Pelagia benovici sp. -
Sponges of the Caribbean: Linking Sponge Morphology and Associated Bacterial Communities Ericka Ann Poppell
University of Richmond UR Scholarship Repository Master's Theses Student Research 5-2011 Sponges of the Caribbean: linking sponge morphology and associated bacterial communities Ericka Ann Poppell Follow this and additional works at: http://scholarship.richmond.edu/masters-theses Part of the Biology Commons Recommended Citation Poppell, Ericka Ann, "Sponges of the Caribbean: linking sponge morphology and associated bacterial communities" (2011). Master's Theses. Paper 847. This Thesis is brought to you for free and open access by the Student Research at UR Scholarship Repository. It has been accepted for inclusion in Master's Theses by an authorized administrator of UR Scholarship Repository. For more information, please contact [email protected]. ABSTRACT SPONGES OF THE CARIBBEAN: LINKING SPONGE MORPHOLOGY AND ASSOCIATED BACTERIAL COMMUNITIES By: Ericka Ann Poppell, B.S. A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science at the University of Richmond University of Richmond, May 2011 Thesis Director: Malcolm S. Hill, Ph.D., Professor, Department of Biology The ecological and evolutionary relationship between sponges and their symbiotic microflora remains poorly understood, which limits our ability to understand broad scale patterns in benthic-pelagic coupling on coral reefs. Previous research classified sponges into two different categories of sponge-microbial associations: High Microbial Abundance (HMA) and Low Microbial Abundance (LMA) sponges. Choanocyte chamber morphology and density was characterized in representatives of HMA and LMA sponges using scanning electron I)licroscopy from freeze-fractured tissue. Denaturing Gradient Gel Electrophoresis was used to examine taxonomic differences among the bacterial communities present in a variety of tropical sponges. -
A Review of Chemical Defense in Poison Frogs (Dendrobatidae): Ecology, Pharmacokinetics, and Autoresistance
Chapter 21 A Review of Chemical Defense in Poison Frogs (Dendrobatidae): Ecology, Pharmacokinetics, and Autoresistance Juan C. Santos , Rebecca D. Tarvin , and Lauren A. O’Connell 21.1 Introduction Chemical defense has evolved multiple times in nearly every major group of life, from snakes and insects to bacteria and plants (Mebs 2002 ). However, among land vertebrates, chemical defenses are restricted to a few monophyletic groups (i.e., clades). Most of these are amphibians and snakes, but a few rare origins (e.g., Pitohui birds) have stimulated research on acquired chemical defenses (Dumbacher et al. 1992 ). Selective pressures that lead to defense are usually associated with an organ- ism’s limited ability to escape predation or conspicuous behaviors and phenotypes that increase detectability by predators (e.g., diurnality or mating calls) (Speed and Ruxton 2005 ). Defended organisms frequently evolve warning signals to advertise their defense, a phenomenon known as aposematism (Mappes et al. 2005 ). Warning signals such as conspicuous coloration unambiguously inform predators that there will be a substantial cost if they proceed with attack or consumption of the defended prey (Mappes et al. 2005 ). However, aposematism is likely more complex than the simple pairing of signal and defense, encompassing a series of traits (i.e., the apose- matic syndrome) that alter morphology, physiology, and behavior (Mappes and J. C. Santos (*) Department of Zoology, Biodiversity Research Centre , University of British Columbia , #4200-6270 University Blvd , Vancouver , BC , Canada , V6T 1Z4 e-mail: [email protected] R. D. Tarvin University of Texas at Austin , 2415 Speedway Stop C0990 , Austin , TX 78712 , USA e-mail: [email protected] L. -
WILDLIFE TRADE in AMAZON COUNTRIES: an ANALYSIS of TRADE in CITES-LISTED SPECIES Note by the Executive Secretary 1
CBD Distr. GENERAL CBD/SBSTTA/21/INF/8 17 November 2017 ENGLISH ONLY SUBSIDIARY BODY ON SCIENTIFIC, TECHNICAL AND TECHNOLOGICAL ADVICE Twenty-first meeting Montreal, Canada, 11-14 December 2017 Item 4 of the provisional agenda* WILDLIFE TRADE IN AMAZON COUNTRIES: AN ANALYSIS OF TRADE IN CITES-LISTED SPECIES Note by the Executive Secretary 1. The Executive Secretary is circulating herewith, for the information of participants in the twenty-first meeting of the Subsidiary Body on Scientific, Technical and Technological Advice, a report presenting a comprehensive overview of international trade in wildlife species listed in the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) in the Amazon countries: Bolivia; Brazil; Colombia; Ecuador; Guyana; Peru; Suriname; and Venezuela. The analysis provides a baseline of information on trade levels and trends in these countries for the 10-year period 2005-2014, in order to inform trade management in the region. It has been produced in close collaboration with national experts, presenting contextual information and insights into the management of wildlife trade in the region. 2. The report is relevant to the work of the Convention on Biological Diversity, in particular with regard to decision XIII/8, paragraph 5(d), in which the Conference of the Parties requests the Executive Secretary, in collaboration with other members of the Collaborative Partnership on Sustainable Wildlife Management, to continue to support efforts by Parties to combat illicit trafficking in wildlife, in line with United Nations General Assembly resolution 69/314 of 30 July 2015, and to enhance institutional capacities on wildlife conservation and law enforcement with relevant law enforcement bodies, such as the International Consortium on Combating Wildlife Crime. -
Scyphozoa, Cnidaria)
Plankton Benthos Res 6(3): 175–177, 2011 Plankton & Benthos Research © The Plankton Society of Japan Note First record of wild polyps of Chrysaora pacifica (Goette, 1886) (Scyphozoa, Cnidaria) MASAYA TOYOKAWA National Research Institute of Fisheries Science, Fisheries Research Agency, Yokohama, Kanagawa 236–8648, Japan Present address: Seikai National Fisheries Research Institute, Fisheries Research Agency, 1551–8 Taira-machi, Nagasaki, Nagasaki 851–2213, Japan Received 7 February 2011; Accepted 26 July 2011 Abstract: Polyps of Chrysaora pacifica were found on sediments sampled from the sea bottom in Sagami Bay near the mouth of the Sagami River on 26 June 2009; they were identified from released ephyrae in the laboratory. This is the first record of wild polyps of C. pacifica. Polyps and/or podocysts were found from five among the six stations. They were found on 25 shells (2.5–9.2 cm in width, 1.6–5.3 cm in height) and on 22 stones (1.5–8.0 cm in width, 1.3–5.0 cm in height). The shells with polyps were mostly from the dead clam Meretrix lamarckii. Polyps and podocysts were mostly found on the concave surface of bivalve shells, or in hollows of the stones. The number of polyps and podocysts per shell ranged between 0–52 (medianϭ9) and 0–328 (medianϭ28); and those per stone were 1–12 (medianϭ2) and 0–26 (medianϭ1.5). The number, especially of podocysts, was much greater on shells than on stones. On a convex substrate they can easily be removed by being hit with other substrates during dredging and washing, and such a process may also occur in natural conditions. -
Taxonomic Checklist of Amphibian Species Listed in the CITES
CoP17 Doc. 81.1 Annex 5 (English only / Únicamente en inglés / Seulement en anglais) Taxonomic Checklist of Amphibian Species listed in the CITES Appendices and the Annexes of EC Regulation 338/97 Species information extracted from FROST, D. R. (2015) "Amphibian Species of the World, an online Reference" V. 6.0 (as of May 2015) Copyright © 1998-2015, Darrel Frost and TheAmericanMuseum of Natural History. All Rights Reserved. Additional comments included by the Nomenclature Specialist of the CITES Animals Committee (indicated by "NC comment") Reproduction for commercial purposes prohibited. CoP17 Doc. 81.1 Annex 5 - p. 1 Amphibian Species covered by this Checklist listed by listed by CITES EC- as well as Family Species Regulation EC 338/97 Regulation only 338/97 ANURA Aromobatidae Allobates femoralis X Aromobatidae Allobates hodli X Aromobatidae Allobates myersi X Aromobatidae Allobates zaparo X Aromobatidae Anomaloglossus rufulus X Bufonidae Altiphrynoides malcolmi X Bufonidae Altiphrynoides osgoodi X Bufonidae Amietophrynus channingi X Bufonidae Amietophrynus superciliaris X Bufonidae Atelopus zeteki X Bufonidae Incilius periglenes X Bufonidae Nectophrynoides asperginis X Bufonidae Nectophrynoides cryptus X Bufonidae Nectophrynoides frontierei X Bufonidae Nectophrynoides laevis X Bufonidae Nectophrynoides laticeps X Bufonidae Nectophrynoides minutus X Bufonidae Nectophrynoides paulae X Bufonidae Nectophrynoides poyntoni X Bufonidae Nectophrynoides pseudotornieri X Bufonidae Nectophrynoides tornieri X Bufonidae Nectophrynoides vestergaardi -
Phylogenetic Analyses of Marine Sponges Within the Order Verongida: a Comparison of Morphological and Molecular Data
Invertebrate Biology 126(3): 220–234. r 2007, The Authors Journal compilation r 2007, The American Microscopical Society, Inc. DOI: 10.1111/j.1744-7410.2007.00092.x Phylogenetic analyses of marine sponges within the order Verongida: a comparison of morphological and molecular data Patrick M. Erwin and Robert W. Thackera University of Alabama at Birmingham, Birmingham, Alabama 35294, USA Abstract. Because the taxonomy of marine sponges is based primarily on morphological characters that can display a high degree of phenotypic plasticity, current classifications may not always reflect evolutionary relationships. To assess phylogenetic relationships among sponges in the order Verongida, we examined 11 verongid species, representing six genera and four families. We compared the utility of morphological and molecular data in verongid sponge systematics by comparing a phylogeny constructed from a morphological character matrix with a phylogeny based on nuclear ribosomal DNA sequences. The morphological phylogeny was not well resolved below the ordinal level, likely hindered by the paucity of characters available for analysis, and the potential plasticity of these characters. The molec- ular phylogeny was well resolved and robust from the ordinal to the species level. We also examined the morphology of spongin fibers to assess their reliability in verongid sponge tax- onomy. Fiber diameter and pith content were highly variable within and among species. Despite this variability, spongin fiber comparisons were useful at lower taxonomic levels (i.e., among congeneric species); however, these characters are potentially homoplasic at higher taxonomic levels (i.e., between families). Our molecular data provide good support for the current classification of verongid sponges, but suggest a re-examination and potential reclas- sification of the genera Aiolochroia and Pseudoceratina. -
Of the US Caribbean to Address Required Provisions of the Magnu
Comprehensive Amendment to the Fishery Management Plans (FMPs) of the U.S. Caribbean to Address Required Provisions of the Magnuson-Stevens Fishery Conservation and Management Act: • Amendment 2 to the FMP for the Spiny Lobster Fishery of Puerto Rico and the U.S. Virgin Islands • Amendment 1 to FMP for the Queen Conch Resources of Puerto Rico and the U.S. Virgin Islands • Amendment 3 to the FMP for the Reef Fish Fishery of Puerto Rico and the U.S. Virgin Islands • Amendment 2 to the FMP for the Corals and Reef Associated Invertebrates of Puerto Rico and the U.S. Virgin Islands Including Supplemental Environmental Impact Statement, Regulatory Impact Review, and Regulatory Flexibility Act Analysis 24 May 2005 Caribbean Fishery Management Council 268 Munoz Rivera Avenue, Suite 1108 San Juan, Puerto Rico 00918-2577 (787) 766-5926 (Phone); (787) 766-6239 (Fax) http://www.caribbeanfmc.com National Marine Fisheries Service Southeast Regional Office 263 13th Avenue South St. Petersburg, Florida 33701 (727) 824-5305 (Phone); (727) 824-5308 (Fax) http://sero.nmfs.noaa.gov Table of Contents Tables and Figures in Appendix A ............................................... vi Abbreviations and acronyms ................................................... viii Supplemental Environmental Impact Statement (SEIS) Cover Sheet ..................... ix Comments and Responses to DSEIS. x 1 Summary ..............................................................1 1.1 Description of alternatives ...........................................1 1.2 Environmental consequences -
Evaluation of Cyanea Capillata Sting Management Protocols Using Ex Vivo and in Vitro Envenomation Models
toxins Article Evaluation of Cyanea capillata Sting Management Protocols Using Ex Vivo and In Vitro Envenomation Models Thomas K. Doyle 1,* , Jasmine L. Headlam 1, Christie L. Wilcox 2 , Eoin MacLoughlin 1 and Angel A. Yanagihara 2,3,* 1 Discipline of Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, Galway H91 W5P7, Ireland; [email protected] (J.L.H.); [email protected] (E.M.) 2 Department of Tropical Medicine, Medical Microbiology and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa,¯ Honolulu, HI 96813, USA; [email protected] 3 Békésy Laboratory of Neurobiology, Pacific Biosciences Research Center, School of Ocean and Earth Science and Technology, University of Hawaii at Manoa,¯ Honolulu, HI 96822, USA * Correspondence: [email protected] (T.K.D.); [email protected] (A.A.Y.); Tel.: +353-091-493744 (T.K.D.); +1-808-956-8328 (A.A.Y.) Academic Editor: Bryan Grieg Fry Received: 2 June 2017; Accepted: 3 July 2017; Published: 7 July 2017 Abstract: Lion’s mane jellyfish (Cyanea capillata) stings cause severe pain and can lead to dangerous systemic effects, including Irukandji-like syndrome. As is the case for most cnidarian stings, recommended medical protocols in response to such stings lack rigorous scientific support. In this study, we sought to evaluate potential first aid care protocols using previously described envenomation models that allow for direct measurements of venom activity. We found that seawater rinsing, the most commonly recommended method of tentacle removal for this species, induced significant increases in venom delivery, while rinsing with vinegar or Sting No More® Spray did not.