An Assessment of Fungal Occurrence in Treated Drinking Water and Implications to Public Health
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Review of Oxepine-Pyrimidinone-Ketopiperazine Type Nonribosomal Peptides
H OH metabolites OH Review Review of Oxepine-Pyrimidinone-Ketopiperazine Type Nonribosomal Peptides Yaojie Guo , Jens C. Frisvad and Thomas O. Larsen * Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Building 221, DK-2800 Kgs. Lyngby, Denmark; [email protected] (Y.G.); [email protected] (J.C.F.) * Correspondence: [email protected]; Tel.: +45-4525-2632 Received: 12 May 2020; Accepted: 8 June 2020; Published: 15 June 2020 Abstract: Recently, a rare class of nonribosomal peptides (NRPs) bearing a unique Oxepine-Pyrimidinone-Ketopiperazine (OPK) scaffold has been exclusively isolated from fungal sources. Based on the number of rings and conjugation systems on the backbone, it can be further categorized into three types A, B, and C. These compounds have been applied to various bioassays, and some have exhibited promising bioactivities like antifungal activity against phytopathogenic fungi and transcriptional activation on liver X receptor α. This review summarizes all the research related to natural OPK NRPs, including their biological sources, chemical structures, bioassays, as well as proposed biosynthetic mechanisms from 1988 to March 2020. The taxonomy of the fungal sources and chirality-related issues of these products are also discussed. Keywords: oxepine; nonribosomal peptides; bioactivity; biosynthesis; fungi; Aspergillus 1. Introduction Nonribosomal peptides (NRPs), mostly found in bacteria and fungi, are a class of peptidyl secondary metabolites biosynthesized by large modularly organized multienzyme complexes named nonribosomal peptide synthetases (NRPSs) [1]. These products are amongst the most structurally diverse secondary metabolites in nature; they exhibit a broad range of activities, which have been exploited in treatments such as the immunosuppressant cyclosporine A and the antibiotic daptomycin [2,3]. -
Paecilomyces Variotii Xylanase Production, Purification and Characterization with Antioxidant Xylo-Oligosaccharides Production
www.nature.com/scientificreports OPEN Paecilomyces variotii xylanase production, purifcation and characterization with antioxidant xylo‑oligosaccharides production Asmaa Abdella1, Samah Ramadan2, Ragaa A. Hamouda3,4, Amna A. Saddiq5, Nuha M. Alhazmi5 & Mahmoud A. Al‑Saman1* Paecilomyces variotii xylanase was, produced in stirred tank bioreactor with yield of 760 U/mL and purifed using 70% ammonium sulfate precipitation and ultra‑fltration causing 3.29‑fold purifcation with 34.47% activity recovery. The enzyme purity was analyzed on sodium dodecyl sulfate– polyacrylamide gel electrophoresis (SDS‑PAGE) confrming its monomeric nature as single band at 32 KDa. Zymography showed xylan hydrolysis activity at the same band. The purifed enzyme had optimum activity at 60 °C and pH 5.0. The pH stability range was 5–9 and the temperature stability was up 70 °C. Fe2+and Fe3+ exhibited inhibition of xylanase enzyme while Cu2+, Ca2+, Mg2+ and Mn2+ stimulated its activity. Mercaptoethanol stimulated its activity; however, Na2‑EDTA and SDS inhibited its activity. The purifed xylanase could hydrolyze beechwood xylan but not carboxymethyl cellulose (CMC), avicel or soluble starch. Paecilomyces variotii xylanase Km and Vmax for beechwood were determined to be 3.33 mg/mL and 5555 U/mg, respectively. The produced xylanase enzyme applied on beech xylan resulted in diferent types of XOS. The antioxidant activity of xylo‑oligosaccharides increased from 15.22 to 70.57% when the extract concentration was increased from 0.1 to 1.5 mg/ mL. The enzyme characteristics and kinetic parameters indicated its high efciency in the hydrolysis of xylan and its potential efectiveness in lignocellulosic hydrolysis and other industrial application. -
Mining of Cryptic Secondary Metabolism in Aspergillus
Downloaded from orbit.dtu.dk on: Oct 10, 2021 Mining of Cryptic Secondary Metabolism in Aspergillus Guo, Yaojie Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Guo, Y. (2020). Mining of Cryptic Secondary Metabolism in Aspergillus. DTU Bioengineering. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Mining of Cryptic Secondary Metabolism in Aspergillus O O O N R HN O N N N O O O OH OH O O OH OH OH O OH O OH OH OH OH HO O OH OH O OH OH OH O Yaojie Guo PhD Thesis Department of Biotechnology and Biomedicine Technical University of Denmark September 2020 Mining of Cryptic Secondary Metabolism in Aspergillus Yaojie Guo PhD Thesis Department of Biotechnology and Biomedicine Technical University of Denmark September 2020 Supervisors: Professor Thomas Ostenfeld Larsen Professor Uffe Hasbro Mortensen Preface This thesis is submitted to the Technical University of Denmark (Danmarks Tekniske Universitet, DTU) in partial fulfillment of the requirements for the Degree of Doctor of Philosophy. -
Diversity and Bioprospection of Fungal Community Present in Oligotrophic Soil of Continental Antarctica
Extremophiles (2015) 19:585–596 DOI 10.1007/s00792-015-0741-6 ORIGINAL PAPER Diversity and bioprospection of fungal community present in oligotrophic soil of continental Antarctica Valéria M. Godinho · Vívian N. Gonçalves · Iara F. Santiago · Hebert M. Figueredo · Gislaine A. Vitoreli · Carlos E. G. R. Schaefer · Emerson C. Barbosa · Jaquelline G. Oliveira · Tânia M. A. Alves · Carlos L. Zani · Policarpo A. S. Junior · Silvane M. F. Murta · Alvaro J. Romanha · Erna Geessien Kroon · Charles L. Cantrell · David E. Wedge · Stephen O. Duke · Abbas Ali · Carlos A. Rosa · Luiz H. Rosa Received: 20 November 2014 / Accepted: 16 February 2015 / Published online: 26 March 2015 © Springer Japan 2015 Abstract We surveyed the diversity and capability of understanding eukaryotic survival in cold-arid oligotrophic producing bioactive compounds from a cultivable fungal soils. We hypothesize that detailed further investigations community isolated from oligotrophic soil of continen- may provide a greater understanding of the evolution of tal Antarctica. A total of 115 fungal isolates were obtained Antarctic fungi and their relationships with other organisms and identified in 11 taxa of Aspergillus, Debaryomyces, described in that region. Additionally, different wild pristine Cladosporium, Pseudogymnoascus, Penicillium and Hypo- bioactive fungal isolates found in continental Antarctic soil creales. The fungal community showed low diversity and may represent a unique source to discover prototype mol- richness, and high dominance indices. The extracts of ecules for use in drug and biopesticide discovery studies. Aspergillus sydowii, Penicillium allii-sativi, Penicillium brevicompactum, Penicillium chrysogenum and Penicil- Keywords Antarctica · Drug discovery · Ecology · lium rubens possess antiviral, antibacterial, antifungal, Fungi · Taxonomy antitumoral, herbicidal and antiprotozoal activities. -
Diversity and Antimicrobial Activity of Culturable Fungi Isolated from Six Species of the South China Sea Gorgonians
Microb Ecol (2012) 64:617–627 DOI 10.1007/s00248-012-0050-x FUNGAL MICROBIOLOGY Diversity and Antimicrobial Activity of Culturable Fungi Isolated from Six Species of the South China Sea Gorgonians Xiao-Yong Zhang & Jie Bao & Guang-Hua Wang & Fei He & Xin-Ya Xu & Shu-Hua Qi Received: 16 December 2011 /Accepted: 27 March 2012 /Published online: 15 April 2012 # Springer Science+Business Media, LLC 2012 Abstract Fungi in gorgonians are now known to cause proportion (38 %) of fungal isolates displayed distinct anti- gorgonian diseases, but little attention has been paid to the bacterial and antifungal activity, suggesting that the nature of fungal communities associated with gorgonians. gorgonian-associated fungi may aid their hosts in protection The diversity of culturable fungi associated with six species against pathogens. This is the first report comparing the of healthy South China Sea gorgonians were investigated diversity of fungal communities among the South China using a culture-dependent method followed by analysis of Sea gorgonians. It contributes to our knowledge of fungal internal transcribed spacer sequences. A total of 121 gorgonian-associated fungi and further increases the pool fungal isolates were recovered and identified using the Basic of fungi available for natural bioactive product screening. Local Alignment Search Tool search program. These belonged to 41 fungal species from 20 genera. Of these, 30 species and 12 genera are new reports for gorgonians, Introduction and the genera Aspergillus and Penicillium were the most diverse and common in the six gorgonian species. Compar- Coral reefs are widely recognized as one of the most diverse ison of the fungal communities in the six gorgonian species, ecosystems, containing large and diverse microbial commu- together with results from previous relevant studies, indicat- nities. -
New Species and Changes in Fungal Taxonomy and Nomenclature
Journal of Fungi Review From the Clinical Mycology Laboratory: New Species and Changes in Fungal Taxonomy and Nomenclature Nathan P. Wiederhold * and Connie F. C. Gibas Fungus Testing Laboratory, Department of Pathology and Laboratory Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA; [email protected] * Correspondence: [email protected] Received: 29 October 2018; Accepted: 13 December 2018; Published: 16 December 2018 Abstract: Fungal taxonomy is the branch of mycology by which we classify and group fungi based on similarities or differences. Historically, this was done by morphologic characteristics and other phenotypic traits. However, with the advent of the molecular age in mycology, phylogenetic analysis based on DNA sequences has replaced these classic means for grouping related species. This, along with the abandonment of the dual nomenclature system, has led to a marked increase in the number of new species and reclassification of known species. Although these evaluations and changes are necessary to move the field forward, there is concern among medical mycologists that the rapidity by which fungal nomenclature is changing could cause confusion in the clinical literature. Thus, there is a proposal to allow medical mycologists to adopt changes in taxonomy and nomenclature at a slower pace. In this review, changes in the taxonomy and nomenclature of medically relevant fungi will be discussed along with the impact this may have on clinicians and patient care. Specific examples of changes and current controversies will also be given. Keywords: taxonomy; fungal nomenclature; phylogenetics; species complex 1. Introduction Kingdom Fungi is a large and diverse group of organisms for which our knowledge is rapidly expanding. -
Diagnosis and Management of Acute Appendicitis in 21 Pediatric Hematology and Oncology Patients at a Tertiary Care Cancer Center
www.nature.com/scientificreports OPEN Diagnosis and management of acute appendicitis in 21 pediatric hematology and oncology patients at a tertiary care cancer center Hannah von Mersi1, Thomas Benkö2, Heidrun Boztug1, Michael Dworzak1, Gernot Engstler1, Waltraud Friesenbichler1, Caroline Hutter1, Karoly Lakatos1, Georg Mann1, Martin Metzelder2, Roswitha Lüftinger1, Herbert Pichler1, Fiona Poyer1, Leila Ronceray1 & Andishe Attarbaschi 1* Acute appendicitis is a rare gastrointestinal complication of anti-cancer chemotherapy and hematopoietic stem cell transplantation. Among a cohort of 2341 hemato-oncologic patients at a pediatric tertiary care cancer center, we identifed 21 patients (0.9%) with 23 episodes of acute appendicitis, based on pathological imaging of the appendix and clinical fndings. Median age at diagnosis was 10.21 years. Types of underlying disease included acute leukemias (n = 15), solid tumors (n = 4), and aplastic anemia (n = 2). Clinical symptoms seen in > 1 case were recorded for all 23 episodes as follows: abdominal pain, n = 22; abdominal tenderness, n = 4; fever, n = 7; nausea, n = 2; emesis; n = 2; diarrhea, n = 5; and constipation, n = 2. Median leukocyte count at diagnosis was 0.5 × 109/L, with a median of 0.1 × 109/L for the absolute neutrophil count (ANC). All patients received broad- spectrum antibiotics and 18/23 (78%) patients underwent uneventful appendectomy after a median of 5 days and with a median ANC of 0.7 × 109/L. Median duration until continuation of chemotherapy was 17 days for the 20 cases of appendicitis occurring during the patients’ disease course. Overall, 5/21 (19%) patients died including one related to the appendicitis itself which progressed to a typhlitis and was due to a fungal infection. -
Lists of Names in Aspergillus and Teleomorphs As Proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (Doi: 10.3852/14-0
Lists of names in Aspergillus and teleomorphs as proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (doi: 10.3852/14-060), based on retypification of Aspergillus with A. niger as type species John I. Pitt and John W. Taylor, CSIRO Food and Nutrition, North Ryde, NSW 2113, Australia and Dept of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA Preamble The lists below set out the nomenclature of Aspergillus and its teleomorphs as they would become on acceptance of a proposal published by Pitt and Taylor (2014) to change the type species of Aspergillus from A. glaucus to A. niger. The central points of the proposal by Pitt and Taylor (2014) are that retypification of Aspergillus on A. niger will make the classification of fungi with Aspergillus anamorphs: i) reflect the great phenotypic diversity in sexual morphology, physiology and ecology of the clades whose species have Aspergillus anamorphs; ii) respect the phylogenetic relationship of these clades to each other and to Penicillium; and iii) preserve the name Aspergillus for the clade that contains the greatest number of economically important species. Specifically, of the 11 teleomorph genera associated with Aspergillus anamorphs, the proposal of Pitt and Taylor (2014) maintains the three major teleomorph genera – Eurotium, Neosartorya and Emericella – together with Chaetosartorya, Hemicarpenteles, Sclerocleista and Warcupiella. Aspergillus is maintained for the important species used industrially and for manufacture of fermented foods, together with all species producing major mycotoxins. The teleomorph genera Fennellia, Petromyces, Neocarpenteles and Neopetromyces are synonymised with Aspergillus. The lists below are based on the List of “Names in Current Use” developed by Pitt and Samson (1993) and those listed in MycoBank (www.MycoBank.org), plus extensive scrutiny of papers publishing new species of Aspergillus and associated teleomorph genera as collected in Index of Fungi (1992-2104). -
New Species in Aspergillus Section Terrei
available online at www.studiesinmycology.org StudieS in Mycology 69: 39–55. 2011. doi:10.3114/sim.2011.69.04 New species in Aspergillus section Terrei R.A. Samson1*, S.W. Peterson2, J.C. Frisvad3 and J. Varga1,4 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, the Netherlands; 2Microbial Genomics and Bioprocessing Research Unit, National Center for Agricultural Utilization Research, 1815 N. University Street, Peoria, IL 61604, USA; 3Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; 4Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közép fasor 52, Hungary. *Correspondence: Robert A. Samson, [email protected] Abstract: Section Terrei of Aspergillus was studied using a polyphasic approach including sequence analysis of parts of the β-tubulin and calmodulin genes and the ITS region, macro- and micromorphological analyses and examination of extrolite profiles to describe three new species in this section. Based on phylogenetic analysis of calmodulin and β-tubulin sequences seven lineages were observed among isolates that have previously been treated as A. terreus and its subspecies by Raper & Fennell (1965) and others. Aspergillus alabamensis, A. terreus var. floccosus, A. terreus var. africanus, A. terreus var. aureus, A. hortai and A. terreus NRRL 4017 all represent distinct lineages from the A. terreus clade. Among them, A. terreus var. floccosus, A. terreus NRRL 4017 and A. terreus var. aureus could also be distinguished from A. terreus by using ITS sequence data. New names are proposed for A. terreus var. floccosus, A. terreus var. -
New Antifungal Pipeline
author by John eLibraryR. Perfect Duke University Medical Center Durham, NC [email protected] ESCMID Conflicts: consulting/advisory© committee/research grants. Astellas, Merck, F2G, Cidara, Pfizer, Scynexis, Viamet, Amplyx, Vical, Matinas, Minnetronix author by eLibrary ESCMID © Denning and Bromley. Science 347: 1414- 16, 2015 Why? 1. Attributable Mortality author Candidiasis 40% * by Cryptococcosis 20-30% t Aspergillosis 20%□ 2. Fungicidal Activity ( We treat too long for success!!!) 3. Optimize Combination eLibrary 4. Increasing Spectrum of Antifungal Activity (ex. Lomentospora prolificans) 5. Safety ESCMID * Basettii et al Int. Care Med, 2015 © t Bratton et al PLoS One, 2013 □ Marr et al Ann. Intern Med, 2015 + O N - O OH O O O HO authorH N H N H C 3 N O OHHN + byH3C O HO NH O CH3 N O O H N N HO OH O O OH Biafungin (CD101 Acetate) HO Structural modification yields improvedeLibrary chemical & biological properties • Designed for prolonged PK once weekly dosing in clinical studies potential for improved efficacy vs • Designed for high exposures Candida and Aspergillus infections • Eliminates toxic degradation products potential for improved safety ESCMID intravenous; subcutaneous under • Enables multiple formulations© development ICAAC 2015 Day 14 –STRIVE Study mITT Population Rezafungin Rezafungin Caspofungin 400 mg/400 mg (QWk) 400 mg/200 mg (QWk) 70 mg/50 mg (QD) Response N= 33 N= 31 N= 28 n (%) Overall Response- Success 19 (57.6) 22 (71.0)author 18 (64.3) - Failure 7 (21.2) 6by (19.4) 8 (28.6) - Indeterminate 7 (21.2) 3 (9.7) -
In Vitro Activity of Ibrexafungerp Against a Collection of Clinical
Journal of Fungi Article In Vitro Activity of Ibrexafungerp against a Collection of Clinical Isolates of Aspergillus, Including Cryptic Species and Cyp51A Mutants, Using EUCAST and CLSI Methodologies Olga Rivero-Menendez 1, Juan Carlos Soto-Debran 1, Manuel Cuenca-Estrella 1,2 and Ana Alastruey-Izquierdo 1,2,* 1 National Centre for Microbiology, Mycology Reference Laboratory, Instituto de Salud Carlos III, 28222 Madrid, Spain; [email protected] (O.R.-M.); [email protected] (J.C.S.-D.); [email protected] (M.C.-E.) 2 Spanish Network for Research in Infectious Diseases (REIPI RD16/CIII/0004/0003), Instituto de Salud Carlos III, 28222 Madrid, Spain * Correspondence: [email protected]; Tel.: +34-918223784 Abstract: Ibrexafungerp is a new orally-available 1,3-β-D-glucan synthesis inhibitor in clinical devel- opment. Its in vitro activity and that of amphotericin B, voriconazole, and micafungin were evaluated against a collection of 168 clinical isolates of Aspergillus spp., including azole–susceptible and azole– resistant (Cyp51A mutants) Aspergillus fumigatus sensu stricto (s.s.) and cryptic species of Aspergillus belonging to six species complexes showing different patterns of antifungal resistance, using EU- CAST and CLSI antifungal susceptibility testing reference methods. Ibrexafungerp displayed low geometric means of minimal effective concentrations (MECs) against A. fumigatus s.s. strains, both Citation: Rivero-Menendez, O.; azole susceptible (0.040 mg/L by EUCAST and CLSI versus 1.231 mg/L and 0.660 mg/L for voricona- Soto-Debran, J.C.; Cuenca-Estrella, zole, respectively) and azole resistant (0.092 mg/L and 0.056 mg/L, EUCAST and CLSI, while those M.; Alastruey-Izquierdo, A. -
Výročná Správa LF 2017
SLOVENSKÁ ZDRAVOTNÍCKA UNIVERZITA V BRATISLAVE VÝROČNÁ SPRÁVA O ČINNOSTI LEKÁRSKEJ FAKULTY SLOVENSKEJ ZDRAVOTNÍCKEJ UNIVERZITY V BRATISLAVE ZA ROK 2017 1 VÝROČNÁ SPRÁVA O ČINNOSTI LEKÁRSKEJ FAKULTY SLOVENSKEJ ZDRAVOTNÍCKEJ UNIVERZITY V BRATISLAVE ZA ROK 2017 Bratislava, marec 2018 2 Obsah: I. Základné informácie o Lekárskej fakulte: ............................................................................. 4 II. Prehľad najdôležitejších faktov a činností LF SZU .............................................................. 6 III. Informácie o poskytovanom vysokoškolskom vzdelaní ...................................................... 6 IV. Informácie o poskytovaní ďalšieho vzdelávania .................................................................. 9 V. Informácie o výskumnej, umeleckej a ďalšej tvorivej činnosti LF SZU ......................... 13 VI. Habilitačné konania a konania na vymenúvania profesorov ........................................... 19 VII. Akademická mobilita zamestnancov .................................................................................... 19 VIII. Podpora študentov ................................................................................................................. 20 IX. Rozvoj LF SZU ......................................................................................................................... 21 X. Systém kvality ......................................................................................................................... 22 XI. Kontaktné údaje ....................................................................................................................