Incomplete Y Chromosomes Promote Magnification in Male and Female Drosophila (Ribosomal Genes/Ribosomal Gene Amplification) DONALD J

Total Page:16

File Type:pdf, Size:1020Kb

Incomplete Y Chromosomes Promote Magnification in Male and Female Drosophila (Ribosomal Genes/Ribosomal Gene Amplification) DONALD J Proc. Nati. Acad. Sci. USA Vol. 84, pp. 2382-2386, April 1987 Genetics Incomplete Y chromosomes promote magnification in male and female Drosophila (ribosomal genes/ribosomal gene amplification) DONALD J. KOMMA AND SHARYN A. ENDOW* Department of Microbiology and Immunology, Duke University Medical Center, Durham, NC 27710 Communicated by D. Bernard Amos, December 12, 1986 ABSTRACT We have recently shown that magnification, on the Y that might encode a gene whose product initiates an increase in the number of ribosomal RNA genes (rDNA) in breaks in the rDNA or results in unequal pairing. Alterna- gametes produced by rDNA-deficient flies, can occur in female tively, the involvement of a limited region of the Y chromo- Drosophila if they have a Y chromosome. We now have tested some might imply a chromosomal pairing function analogous several X-Y translocation and recombinant chromosomes to to that of the collochores described by Cooper (8). determine which parts of the Y chromosome are necessary for The Ybb- chromosome, discovered by Schultz in 1933 (9), magnification to occur in females. Our data indicate that the has been described as being particularly effective in promot- required region is the distal part of the long arm of the Y ing magnification (1, 10, 11). In addition to promoting a high chromosome, yL. We have also used X-Y translocation chro- frequency of magnification in males carrying an Xbb chro- mosomes to study magnification of rDNA-deficient X chromo- mosome (1), it brings about the production of new bb alleles somes in males. Our data show that the region of the Y in males carrying an Xbb+ chromosome (2, 11, 12), and its chromosome from the distal end of the nucleolus organizer derivatives can bring about magnification of an Xbb chro- through the centromere is not required for magnfication in mosome in males of a bb+ phenotype (13), suggesting that it males. The frequency of magnification in males with rDNA- is in some sense "constitutive" for magnification. No other deficient Y fragments is comparable to that produced by Ybb-, Ybb- chromosomes have been discovered. However, among a chromosome that has often been used to produce magnifica- the reciprocal X-Y translocations produced by Kennison tion in males. These results demonstrate that the Ybb- (14), there are two Y fragments that together contain all ofthe chromosome is not uniquely effective in causing magnification Y fertility factors but have no additive effect in males with an to occur in males. The results of these studies imply that Xbb chromosome, indicating that they are completely or sequences present on yL are required for magnification to almost completely lacking in rDNA. By putting both ofthese occur in females; these sequences are probably also required fragments into males with an Xbb chromosome, we can for magnification in males. Since unequal sister chromatid produce the equivalent of a new Ybb- chromosome. This exchange has been implicated as the major mechanism of procedure can be used to learn whether or not any unique ribosomal gene increase during magnification, the yL se- feature of Ybb- is required for magnification. The procedure quences required for magnification may be involved in encod- also can provide at least some information as to which parts ing or regulating products needed for sister chromatid recom- of the Y chromosome are needed for magnification in males. bination in germ-line cells. Inasmuch as both arms ofthe Y chromosome contain factors necessary for male fertility, it would be very difficult to learn Magnification is an increase in the amount of rRNA genes anything about magnification in males completely lacking a Y (rDNA) in gametes produced by severely rDNA-deficient or chromosome, but this method allows us to examine males bobbed (bb) Drosophila melanogaster, resulting in a marked lacking a significant part of the Y. reversion toward wild type in the offspring (1). The major mechanism by which this increase occurs is most probably MATERIALS AND METHODS unequal sister chromatid exchange (2, 3), but other mecha- nisms are also possible (4). We have reported (5) that Drosophila Stocks. Descriptions of all mutants used in this magnification, hitherto known only to occur in males, can work can be found in Lindsley and Grell (9). The b19 occur in severely bobbed females if the females have a Y chromosome was obtained from R. S. Hawley in March, chromosome. The frequency of magnified gametes produced 1984, and cloned in June, 1984. The y bb2 chromosome was by such females is about 1-2%. recovered after recombination in a b19/y car bb+ female. A single y bb recombinant chromosome was cloned in Novem- X-Y translocation and recombinant chromosomes can be ber, 1985. The uco3 bb chromosome was found by K. C. used to learn which parts of the Y chromosome are required Atwood (15). The y mutation was placed on the chromosome for magnification to occur in females. Such tests cannot by D.J.K. in 1974 by recombination in a bb/y car bb+ female. easily be performed in males because both arms of the Y The stock was cloned in October, 1984. chromosome are required for male fertility. Therefore, the The In(l)sc4LscSR, sc4sc8 chromosome is an inverted X fact that the Y chromosome is needed for magnification in chromosome with the nucleolus organizer deleted. It is females provides an opportunity to learn whether all of the Y referred to as X-NO in this report. The C(1)DX chromosome is required or only a small part ofit. Requirement for an entire is a compound double-X chromosome with both nucleolus Y chromosome, iffound, would imply an effect similarto that organizers deleted and is denoted A-NO. Both of these of suppression-of-position effect variegation by the Y chro- variant chromosomes are described in Lindsley and Grell (9). mosome (6, 7). The requirement for a limited region of the Y The XYbb- chromosome was made by D.J.K. and is chromosome would suggest the involvement of a single locus described in Komma and Endow (5). It consists of an X chromosome deficient for bb but normal in sequence and The publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisement" Abbreviation: rDNA, 18S and 28S rRNA genes. in accordance with 18 U.S.C. §1734 solely to indicate this fact. *To whom reprint requests should be addressed. 2382 Downloaded by guest on September 27, 2021 Genetics: Komma and Endow Proc. Natl. Acad. Sci. USA 84 (1987) 2383 kl-5 kl-3 kl-2 kl-l NIt, ks-l ks-2 -v+ w19 ---o vi y+ 82 w28 BS v31 BS P7 Bs v24 Bs FIG. 1. Schematic diagram of the Y chromosome fragments used in this work. The top line shows a BsYy+ chromosome; the w19, w28, v31, P7, and v24 X-Y translocation chromosomes were derived from this Y chromosome. The approximate positions of the male fertility factors on the long and short arms of the Y chromosome are indicated. The X-Y translocation chromosomes are shown with solid lines indicating Y chromosome sequences and dashed lines representing regions from the X chromosome. The open and filled circles represent centromeres from the X and Y chromosomes, respectively. It is not certain whether the centromere and bb locus in scvl.Ys are from the X or Y chromosome. All Y fragments shown are either bb0 or bb- except for the scvl.Ys chromosome, of which a severely bobbed variant was used. attached to the long arm of Ybb-. It contains all of the Y contains kl-S, is marked with Bs, and has no additive effect chromosome male fertility factors. when combined with an Xbb chromosome. X-Y Translocation Chromosomes. The translocation chro- Two other Y-fragment chromosomes were obtained from mosomes furnished to us by D. L. Lindsley were made by the Bowling Green stock center in November, 1985 (Fig. 1). Kennison (14) and further characterized and described by The scvl.Ys chromosome (18) is the result of a recombination Hardy and co-workers (16, 17). They are maintained as between the Y chromosome and the centromeric heterochro, reciprocal X-Y translocations in balanced stocks. The Y- matin of the scvl chromosome. It contains all of the Ys fragment translocations are diagrammed in Fig. 1 and are fertility factors, but it is not certain whether the centromere briefly described as follows. and bobbed locus are from the X or Y chromosome. After the T(J;Y)w19. The short arm of the Y chromosome, Ys, is stock was obtained, males were mated to C(J)DX y w brokenjust distal to the nucleolus organizer and the tip of Ys, females, and a severely bobbed LNO/Ys female carrying marked with y', is attached to the X centromere. The Ys tip the scvl.Y chromosome was selected. This chromosome was contains all of the Ys fertility factors and has no additive cloned in January, 1986, and is called scvl.Ysbb in this report. effect when combined with an Xbb chromosome, suggesting The YL y+B2 chromosome (19) is the result of a recombina- that it is completely or almost completely deficient for rDNA. tion between Ys and the distal heterochromatin of In(1)sc8L, T(J;Y)w28. yL is broken just distal to the centromere and ENR. It contains all of yL and the Y centromere, but not the attached to the X centromere. The yL fragment contains all nucleolus organizer. It is marked with y'. of the yL fertility factors, is marked with Bs, and has no Magnifying Crosses.
Recommended publications
  • Hierarchical Looping of Zigzag Nucleosome Chains in Metaphase Chromosomes
    Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes Sergei A. Grigoryeva,1, Gavin Bascomb, Jenna M. Buckwaltera, Michael B. Schuberta, Christopher L. Woodcockc, and Tamar Schlickb,d,1 aDepartment of Biochemistry and Molecular Biology, Milton S. Hershey Medical Center, Pennsylvania State University College of Medicine, Hershey, PA 17033; bDepartment of Chemistry and Courant Institute of Mathematical Sciences, New York University, New York, NY 10012; cBiology Department, University of Massachusetts, Amherst, MA 01003; and dNYU-ECNU Center for Computational Chemistry, NYU Shanghai, Shanghai 200062, China Edited by Michael Levitt, Stanford University School of Medicine, Stanford, CA, and approved December 22, 2015 (received for review September 14, 2015) The architecture of higher-order chromatin in eukaryotic cell nuclei is However, evidence for 30-nm fibers in interphase nuclei of living largely unknown. Here, we use electron microscopy-assisted nucleo- cells has been controversial (reviewed in refs. 9 and 10). For exam- some interaction capture (EMANIC) cross-linking experiments in ple, whereas a distinct 30-nm fiber architecture is observed in ter- combination with mesoscale chromatin modeling of 96-nucleosome minally differentiated cells (11, 12), neither continuous nor periodic arrays to investigate the internal organization of condensed chroma- 30-nm fibers are observed in the nuclei of proliferating cells (13–15). tin in interphase cell nuclei and metaphase chromosomes at nucleo- However, zigzag features of the chromatin fibers are well supported somal resolution. The combined data suggest a novel hierarchical by nucleosome interaction mapping in vitro (16) and in vivo (15). looping model for chromatin higher-order folding, similar to rope For chromatin architecture within metaphase chromosomes, flaking used in mountain climbing and rappelling.
    [Show full text]
  • Chromatid Cohesion During Mitosis: Lessons from Meiosis
    Journal of Cell Science 112, 2607-2613 (1999) 2607 Printed in Great Britain © The Company of Biologists Limited 1999 JCS0467 COMMENTARY Chromatid cohesion during mitosis: lessons from meiosis Conly L. Rieder1,2,3 and Richard Cole1 1Wadsworth Center, New York State Dept of Health, PO Box 509, Albany, New York 12201-0509, USA 2Department of Biomedical Sciences, State University of New York, Albany, New York 12222, USA 3Marine Biology Laboratory, Woods Hole, MA 02543-1015, USA *Author for correspondence (e-mail: [email protected]) Published on WWW 21 July 1999 SUMMARY The equal distribution of chromosomes during mitosis and temporally separated under various conditions. Finally, we meiosis is dependent on the maintenance of sister demonstrate that in the absence of a centromeric tether, chromatid cohesion. In this commentary we review the arm cohesion is sufficient to maintain chromatid cohesion evidence that, during meiosis, the mechanism underlying during prometaphase of mitosis. This finding provides a the cohesion of chromatids along their arms is different straightforward explanation for why mutants in proteins from that responsible for cohesion in the centromere responsible for centromeric cohesion in Drosophila (e.g. region. We then argue that the chromatids on a mitotic ord, mei-s332) disrupt meiosis but not mitosis. chromosome are also tethered along their arms and in the centromere by different mechanisms, and that the Key words: Sister-chromatid cohesion, Mitosis, Meiosis, Anaphase functional action of these two mechanisms can be onset INTRODUCTION (related to the fission yeast Cut1P; Ciosk et al., 1998). When Pds1 is destroyed Esp1 is liberated, and this event somehow The equal distribution of chromosomes during mitosis is induces a class of ‘glue’ proteins, called cohesins (e.g.
    [Show full text]
  • Ftsk Actively Segregates Sister Chromosomes in Escherichia Coli
    FtsK actively segregates sister chromosomes in Escherichia coli Mathieu Stoufa,b, Jean-Christophe Meilea,b, and François Corneta,b,1 aLaboratoire de Microbiologie et de Génétique Moléculaires, Centre National de la Recherche Scientifique, F-31000, Toulouse, France; and bUniversité Paul Sabatier, Université de Toulouse, F-31000, Toulouse, France Edited by Nancy E. Kleckner, Harvard University, Cambridge, MA, and approved May 23, 2013 (received for review March 6, 2013) Bacteria use the replication origin-to-terminus polarity of their cir- with the divisome, is also required (13, 14). FtsK acts in a region cular chromosomes to control DNA transactions during the cell cy- about 400 kb long (15) and translocates DNA toward dif.Trans- cle. Segregation starts by active migration of the region of origin location is oriented by recognition of the FtsK-orienting polar followed by progressive movement of the rest of the chromo- sequences (KOPS) DNA motifs that are preferentially oriented somes. The last steps of segregation have been studied extensively toward dif, particularly in the ter region (4, 16–18). Upon reaching in the case of dimeric sister chromosomes and when chromosome the dif site, FtsK activates XerCD-mediated recombination that organization is impaired by mutations. In these special cases, the resolves chromosome dimers. The oriented translocation activity divisome-associated DNA translocase FtsK is required. FtsK pumps of FtsK also is strictly required when chromosome organization is chromosomes toward the dif chromosome dimer resolution site impaired by mutations, for instance by inactivation of the MukBEF using polarity of the FtsK-orienting polar sequence (KOPS) DNA complex (19, 20) or in strains carrying important asymmetry of the motifs.
    [Show full text]
  • Mitosis Vs. Meiosis
    Mitosis vs. Meiosis In order for organisms to continue growing and/or replace cells that are dead or beyond repair, cells must replicate, or make identical copies of themselves. In order to do this and maintain the proper number of chromosomes, the cells of eukaryotes must undergo mitosis to divide up their DNA. The dividing of the DNA ensures that both the “old” cell (parent cell) and the “new” cells (daughter cells) have the same genetic makeup and both will be diploid, or containing the same number of chromosomes as the parent cell. For reproduction of an organism to occur, the original parent cell will undergo Meiosis to create 4 new daughter cells with a slightly different genetic makeup in order to ensure genetic diversity when fertilization occurs. The four daughter cells will be haploid, or containing half the number of chromosomes as the parent cell. The difference between the two processes is that mitosis occurs in non-reproductive cells, or somatic cells, and meiosis occurs in the cells that participate in sexual reproduction, or germ cells. The Somatic Cell Cycle (Mitosis) The somatic cell cycle consists of 3 phases: interphase, m phase, and cytokinesis. 1. Interphase: Interphase is considered the non-dividing phase of the cell cycle. It is not a part of the actual process of mitosis, but it readies the cell for mitosis. It is made up of 3 sub-phases: • G1 Phase: In G1, the cell is growing. In most organisms, the majority of the cell’s life span is spent in G1. • S Phase: In each human somatic cell, there are 23 pairs of chromosomes; one chromosome comes from the mother and one comes from the father.
    [Show full text]
  • Aging Mice Have Increased Chromosome Instability That Is Exacerbated by Elevated Mdm2 Expression
    Oncogene (2011) 30, 4622–4631 & 2011 Macmillan Publishers Limited All rights reserved 0950-9232/11 www.nature.com/onc ORIGINAL ARTICLE Aging mice have increased chromosome instability that is exacerbated by elevated Mdm2 expression T Lushnikova1, A Bouska2, J Odvody1, WD Dupont3 and CM Eischen1 1Department of Pathology, Vanderbilt University School of Medicine, Nashville, TN, USA; 2Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA and 3Department of Biostatistics, Vanderbilt University School of Medicine, Nashville, TN, USA Aging is thought to negatively affect multiple cellular Introduction processes including the ability to maintain chromosome stability. Chromosome instability (CIN) is a common Genomic instability refers to the accumulation or property of cancer cells and may be a contributing factor acquisition of numerical and/or structural abnormali- to cellular transformation. The types of DNA aberrations ties in chromosomes. It has long been observed that that arise during aging before tumor development and that chromosome instability (CIN) is a hallmark of cancer contribute to tumorigenesis are currently unclear. Mdm2, cells and is postulated to be required for tumorigenesis a key regulator of the p53 tumor suppressor and (Lengauer et al., 1998; Negrini et al., 2010). Genomic modulator of DNA break repair, is frequently over- changes, such as chromosome breaks, translocations, expressed in malignancies and contributes to CIN. To genome rearrangements, aneuploidy and telomere short- determine the relationship between aging and CIN and the ening have been observed in aging organisms (Nisitani role of Mdm2, precancerous wild-type C57Bl/6 and et al., 1990; Tucker et al., 1999; Dolle and Vijg, 2002; littermate-matched Mdm2 transgenic mice at various Aubert and Lansdorp, 2008; Zietkiewicz et al., 2009).
    [Show full text]
  • Organization, Evolution and Function of Alpha Satellite Dna
    ORGANIZATION, EVOLUTION AND FUNCTION OF ALPHA SATELLITE DNA AT HUMAN CENTROMERES by M. KATHARINE RUDD Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Dissertation Advisor: Dr. Huntington F. Willard Department of Genetics CASE WESTERN RESERVE UNIVERSITY January, 2005 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the dissertation of ______________________________________________________ candidate for the Ph.D. degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. 1 Table of Contents Table of contents.................................................................................................1 List of Tables........................................................................................................2 List of Figures......................................................................................................3 Acknowledgements.............................................................................................5 Abstract................................................................................................................6
    [Show full text]
  • Comparative Genomic Hybridization in the Detection of DNA Copy Number Abnormalities in Uveal Melanoma1
    [CANCER RESEARCH 54. 4764-4768. September 1. 1994] Comparative Genomic Hybridization in the Detection of DNA Copy Number Abnormalities in Uveal Melanoma1 Kathleen B. Gordon, Curtis T. Thompson, Devron H. Char,2 Joan M. O'Brien, Stewart Kroll, Siavash Ghazvini, and Joe W. Gray Ocular Oncology Unii IK. B. G., D. H. C., J. M. O., S. K., S. G.¡and Laboratory of Molecular Cylomelry ¡C.T. T., J. W. G.I, University of California, San Francisco, California 94143-0730 ABSTRACT identified, and the possibility that more than one locus is involved in tumor initiation and progression can be assessed. Genomic DNA from Genomic instability appears to play an important role in the develop tumor specimens is used so that genetic alterations identified with ment, growth, invasiveness, and eventual metastasis of the neoplastic cell. CGH are not artifactually altered by propagation in cell culture. In the We have used a powerful new technique, comparative genomic hybrid present study, we used CGH to detect alterations in gene copy number ization, to evaluate genetic alterations in 10 fresh frozen uveal melanomas. Comparative genomic hybridization utilizes dual fluorescence in situ hy in ten fresh frozen uveal melanomas. bridization to characterize chromosome deletions and duplications, allow ing for simultaneous evaluation of the entire human genome. Several MATERIALS AND METHODS consistent chromosomal abnormalities were detected. This study con Clinical Data. Ten uveal melanomas were evaluated after primary enucle- firmed previous findings obtained using standard cytogenetic techniques ation. The tumors were classified histologically according to the modified but demonstrated an increased incidence in abnormalities of chromo Callender classification (5).
    [Show full text]
  • Two Distinct Domains in Drosophila Melanogaster Telomeres
    Copyright Ó 2005 by the Genetics Society of America DOI: 10.1534/genetics.105.048827 Two Distinct Domains in Drosophila melanogaster Telomeres Harald Biessmann,* Sudha Prasad,† Valery F. Semeshin,‡ Eugenia N. Andreyeva,‡ Quang Nguyen,§ Marika F. Walter* and James M. Mason†,1 *Developmental Biology Center, University of California, Irvine, California 92697, †Laboratory of Molecular Genetics, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709, ‡Laboratory of Molecular Cytogenetics, Institute of Cytology and Genetics, Russian Academy of Sciences, Novosibirsk 630090, Russia and §Department of Biological Chemistry, University of California, Irvine, California 92697 Manuscript received July 27, 2005 Accepted for publication August 16, 2005 ABSTRACT Telomeres are generally considered heterochromatic. On the basis of DNA composition, the telomeric region of Drosophila melanogaster contains two distinct subdomains: a subtelomeric region of repetitive DNA, termed TAS, and a terminal array of retrotransposons, which perform the elongation function instead of telomerase. We have identified several P-element insertions into this retrotransposon array and compared expression levels of transgenes with similar integrations into TAS and euchromatic regions. In contrast to insertions in TAS, which are silenced, reporter genes in the terminal HeT-A, TAHRE,orTART retroelements did not exhibit repressed expression in comparison with the same transgene construct in euchromatin. These data, in combination with cytological studies, provide evidence that the subtelomeric TAS region exhibits features resembling heterochromatin, while the terminal retrotransposon array exhibits euchromatic characteristics. NA sequences at the ends of eukaryotic chromo- tandem repeats of 457 bp (Walter et al. 1995; Mason D somes are the products of a telomere elongation et al.
    [Show full text]
  • Staining, and in Situ Digestion with Restriction Endonucleases
    Heredity66 (1991) 403—409 Received 23 August 1990 Genetical Society of Great Britain An analysis of coho salmon chromatin by means of C-banding, AG- and fluorochrome staining, and in situ digestion with restriction endonucleases R. LOZANO, C. RUIZ REJON* & M. RUIZ REJON* Departamento de Biologia Animal, Ecologia y Genética. E. /ngenierIa T. AgrIcola, Campus Universitario de Almeria, 04120 AlmerIa and *Facu/tad de Ciencias, 18071 Granada, Universidad de Granada, Spain Thechromosome complement of the coho salmon (Oncorhynchus kisutch) has been analysed by means of C-banding, silver and fluorochrome staining, and in situ digestion with restriction endo- nucleases. C-banding shows heterochromatic regions in the centromeres of most chromosomes but not in the telomeric areas. The fifteenth metacentric chromosome pair contains a large block of constitutive heterochromatin, which occupies almost all of one chromosome arm. This region is also the site where the ribosomal cistrons are located and it reacts positively to CMA3/DA fluorochrome staining. The NORs are subject to chromosome polymorphism, which might be explicable in terms of an amplification of ribosomal cistrons. The digestion banding patterns produced by four types of restriction endonucleases on the euchromatic and heterochromatic regions are described. Two kinds of highly repetitive DNAs can be distinguished and the role of restriction endonucleases as a valuable tool in chromosome characterization studies, as well as in the analysis of the structure and organization of fish chromatin, are also discussed. Keywords:C-banding,coho salmon, fluorochrome staining, restriction endonuclease banding. (Oncorhynchus kisutch), as well as applying conven- Introduction tional banding techniques, we have analysed the Theuse of restriction endonucleases (REs) is becom- mitotic chromosomes using DNA base-pair-specific ing common not only in molecular biology but also as fluorochromes and in situ digestion with restriction an important tool in molecular cytogenetics.
    [Show full text]
  • Holocentric Chromosomes: Convergent Evolution, Meiotic Adaptations, and Genomic Analysis
    Chromosome Res DOI 10.1007/s10577-012-9292-1 Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis Daniël P. Melters & Leocadia V. Paliulis & Ian F. Korf & Simon W. L. Chan # Springer Science+Business Media B.V. 2012 Abstract In most eukaryotes, the kinetochore protein trait has arisen at least 13 independent times (four times in complex assembles at a single locus termed the centro- plants and at least nine times in animals). Holocentric mere to attach chromosomes to spindle microtubules. chromosomes have inherent problems in meiosis because Holocentric chromosomes have the unusual property of bivalents can attach to spindles in a random fashion. attaching to spindle microtubules along their entire Interestingly, there are several solutions that have evolved length. Our mechanistic understanding of holocentric to allow accurate meiotic segregation of holocentric chro- chromosome function is derived largely from studies in mosomes. Lastly, we describe how extensive genome the nematode Caenorhabditis elegans, but holocentric sequencing and experiments in nonmodel organisms chromosomes are found over a broad range of animal may allow holocentric chromosomes to shed light on and plant species. In this review, we describe how hol- general principles of chromosome segregation. ocentricity may be identified through cytological and molecular methods. By surveying the diversity of organ- Keywords centromere . holocentric . meiosis . isms with holocentric chromosomes, we estimate that the phylogeny. tandem repeat . chromosome Abbreviations Responsible Editor: Rachel O’Neill and Beth Sullivan. ChIP-seq Chromatin immunoprecipitation Electronic supplementary material The online version of this followed by sequencing article (doi:10.1007/s10577-012-9292-1) contains ChIP-chip Chromatin immunoprecipitation supplementary material, which is available to authorized users.
    [Show full text]
  • Subtelomere Organization in the Genome of the Microsporidian Encephalitozoon Cuniculi: Patterns of Repeated Sequences and Physic
    Dia et al. BMC Genomics (2016) 17:34 DOI 10.1186/s12864-015-1920-7 RESEARCH ARTICLE Open Access Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: patterns of repeated sequences and physicochemical signatures Ndongo Dia1*, Laurence Lavie2, Ngor Faye3, Guy Méténier2, Edouard Yeramian4, Christophe Duroure5, Bhen S. Toguebaye3, Roger Frutos6, Mbayame N. Niang1, Christian P. Vivarès2, Choukri Ben Mamoun7 and Emmanuel Cornillot8,9* Abstract Background: The microsporidian Encephalitozoon cuniculi is an obligate intracellular eukaryotic pathogen with a small nuclear genome (2.9 Mbp) consisting of 11 chromosomes. Although each chromosome end is known to contain a single rDNA unit, the incomplete assembly of subtelomeric regions following sequencing of the genome identified only 3 of the 22 expected rDNA units. While chromosome end assembly remains a difficult process in most eukaryotic genomes, it is of significant importance for pathogens because these regions encode factors important for virulence and host evasion. Results: Here we report the first complete assembly of E. cuniculi chromosome ends, and describe a novel mosaic structure of segmental duplications (EXT repeats) in these regions. EXT repeats range in size between 3.5 and 23.8 kbp and contain four multigene families encoding membrane associated proteins. Twenty-one recombination sites were identified in the sub-terminal region of E. cuniculi chromosomes. Our analysis suggests that these sites contribute to the diversity of chromosome ends organization through Double Strand Break repair mechanisms. The region containing EXT repeats at chromosome extremities can be differentiated based on gene composition, GC content, recombination sites density and chromosome landscape. Conclusion: Together this study provides the complete structure of the chromosome ends of E.
    [Show full text]
  • Anaphase Bridges: Not All Natural Fibers Are Healthy
    G C A T T A C G G C A T genes Review Anaphase Bridges: Not All Natural Fibers Are Healthy Alice Finardi 1, Lucia F. Massari 2 and Rosella Visintin 1,* 1 Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, 20139 Milan, Italy; alice.fi[email protected] 2 The Wellcome Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK; [email protected] * Correspondence: [email protected]; Tel.: +39-02-5748-9859; Fax: +39-02-9437-5991 Received: 14 July 2020; Accepted: 5 August 2020; Published: 7 August 2020 Abstract: At each round of cell division, the DNA must be correctly duplicated and distributed between the two daughter cells to maintain genome identity. In order to achieve proper chromosome replication and segregation, sister chromatids must be recognized as such and kept together until their separation. This process of cohesion is mainly achieved through proteinaceous linkages of cohesin complexes, which are loaded on the sister chromatids as they are generated during S phase. Cohesion between sister chromatids must be fully removed at anaphase to allow chromosome segregation. Other (non-proteinaceous) sources of cohesion between sister chromatids consist of DNA linkages or sister chromatid intertwines. DNA linkages are a natural consequence of DNA replication, but must be timely resolved before chromosome segregation to avoid the arising of DNA lesions and genome instability, a hallmark of cancer development. As complete resolution of sister chromatid intertwines only occurs during chromosome segregation, it is not clear whether DNA linkages that persist in mitosis are simply an unwanted leftover or whether they have a functional role.
    [Show full text]