Cultivated Plant Taxonomy News 5
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Glossary - Cellbiology
1 Glossary - Cellbiology Blotting: (Blot Analysis) Widely used biochemical technique for detecting the presence of specific macromolecules (proteins, mRNAs, or DNA sequences) in a mixture. A sample first is separated on an agarose or polyacrylamide gel usually under denaturing conditions; the separated components are transferred (blotting) to a nitrocellulose sheet, which is exposed to a radiolabeled molecule that specifically binds to the macromolecule of interest, and then subjected to autoradiography. Northern B.: mRNAs are detected with a complementary DNA; Southern B.: DNA restriction fragments are detected with complementary nucleotide sequences; Western B.: Proteins are detected by specific antibodies. Cell: The fundamental unit of living organisms. Cells are bounded by a lipid-containing plasma membrane, containing the central nucleus, and the cytoplasm. Cells are generally capable of independent reproduction. More complex cells like Eukaryotes have various compartments (organelles) where special tasks essential for the survival of the cell take place. Cytoplasm: Viscous contents of a cell that are contained within the plasma membrane but, in eukaryotic cells, outside the nucleus. The part of the cytoplasm not contained in any organelle is called the Cytosol. Cytoskeleton: (Gk. ) Three dimensional network of fibrous elements, allowing precisely regulated movements of cell parts, transport organelles, and help to maintain a cell’s shape. • Actin filament: (Microfilaments) Ubiquitous eukaryotic cytoskeletal proteins (one end is attached to the cell-cortex) of two “twisted“ actin monomers; are important in the structural support and movement of cells. Each actin filament (F-actin) consists of two strands of globular subunits (G-Actin) wrapped around each other to form a polarized unit (high ionic cytoplasm lead to the formation of AF, whereas low ion-concentration disassembles AF). -
Eastern Deciduous Forest
Eastern Deciduous Forest Physical description Most of the terrain is rolling except for the Ozark Mountains, which can be steep. The average annual precipitation ranges from approximately 35 inches to 90 inches and is usually well-distributed throughout the year. Summers are hot; winters are cold. Dominant vegetation Deciduous trees dominate the landscape across the Eastern Deciduous Forest ecoregion where there is a lack of disturbance. Depending on location, trees such as oaks, hickories, maples, American beech, basswood, buckeye, yellow poplar, walnut, and birches are common in the overstory and can be indicators of a climax successional stage. Prevalent midstory trees include flowering dogwood, sassafras, sourwood, eastern redbud, hophornbeam, American hornbeam, and striped maple. Common shrubs include arrowwood, black huckleberry, blueberries, hawthorn, pawpaw, spicebush, viburnums, and witchhazel. A wide variety of forbs and ferns may be found in the understory. Common evergreen trees on many sites undergoing succession include eastern redcedar and shortleaf pine. Figure 2. Deciduous forest cover occurs over the Eastern Deciduous Forest ecoregion, except where areas have been cleared for agriculture and livestock. Changes in the composition, structure and function of the Eastern Deciduous Forest have already occurred during the past 100 years with the loss of American chestnut and the near total exclusion of fire. Prior to fire suppression, savannas and woodlands dominated by oak and shortleaf pine were prevalent over much of this ecoregion. Well-interspersed with forested areas in the Eastern Deciduous Forest ecoregion are agricultural fields, pastures and hayfields, and fields undergoing succession. Virtually all of these “old- fields” have been cropped in the past, and the vast majority has since been planted to nonnative grasses, especially tall fescue. -
Liliaceae S.L. (Lily Family)
Liliaceae s.l. (Lily family) Photo: Ben Legler Photo: Hannah Marx Photo: Hannah Marx Lilium columbianum Xerophyllum tenax Trillium ovatum Liliaceae s.l. (Lily family) Photo: Yaowu Yuan Fritillaria lanceolata Ref.1 Textbook DVD KRR&DLN Erythronium americanum Allium vineale Liliaceae s.l. (Lily family) Herbs; Ref.2 Stems often modified as underground rhizomes, corms, or bulbs; Flowers actinomorphic; 3 sepals and 3 petals or 6 tepals, 6 stamens, 3 carpels, ovary superior (or inferior). Tulipa gesneriana Liliaceae s.l. (Lily family) “Liliaceae” s.l. (sensu lato: “in the broad sense”) - Lily family; 288 genera/4950 species, including Lilium, Allium, Trillium, Tulipa; This family is treated in a very broad sense in this class, as in the Flora of the Pacific Northwest. The “Liliaceae” s.l. taught in this class is not monophyletic. It is apparent now that the family should be treated in a narrower sense and some of the members should form their own families. Judd et al. recognize 15+ families: Agavaceae, Alliaceae, Amarylidaceae, Asparagaceae, Asphodelaceae, Colchicaceae, Dracaenaceae (Nolinaceae), Hyacinthaceae, Liliaceae, Melanthiaceae, Ruscaceae, Smilacaceae, Themidaceae, Trilliaceae, Uvulariaceae and more!!! (see web reading “Consider the Lilies”) Iridaceae (Iris family) Photo: Hannah Marx Photo: Hannah Marx Iris pseudacorus Iridaceae (Iris family) Photo: Yaowu Yuan Photo: Yaowu Yuan Sisyrinchium douglasii Sisyrinchium sp. Iridaceae (Iris family) Iridaceae - 78 genera/1750 species, Including Iris, Gladiolus, Sisyrinchium. Herbs, aquatic or terrestrial; Underground stems as rhizomes, bulbs, or corms; Leaves alternate, 2-ranked and equitant Ref.3 (oriented edgewise to the stem; Gladiolus italicus Flowers actinomorphic or zygomorphic; 3 sepals and 3 petals or 6 tepals; Stamens 3; Ovary of 3 fused carpels, inferior. -
BIOL/APBI 324 – Introduction to Seed Plant Taxonomy
This syllabus is a general representation of the course as previously offered and is subject to change. BIOL/APBI 324 – Introduction to Seed Plant Taxonomy General Course Syllabus (as of September 2019) About the Course: Course Description: An introduction to seed plant taxonomy emphasizing descriptive morphology and identification. Each student will be required to submit a plant collection. Correct understanding of the actual relationships between plants, rather than superficial resemblance, is the basis of comparative biology required to analyze the diversity of plant forms. The species diversity of plants is considerable, and this course will pay particular attention to very diverse and important groups such as the grasses and the orchids, focusing on reasons for their evolutionary success. Identification skills will be inculcated by the lectures working in tandem with the laboratory sessions. This course aims to give students a good working knowledge of plant taxonomy as a preparation for work in any biological discipline. Course Format: Lecture and Laboratory Credits: 3 Pre-requisites: BIOL 121 Course Learning Objectives: By the end of this course, students will be able to: • Achieve a good working knowledge of concepts, principles, and recent discoveries in plant taxonomy. • Gain an overview of seed plant diversity, including the most species-rich plant families and so be able to place any botanical information in the overall context of plant diversity. • Learn ways in which their knowledge can be applied to ecology and evolutionary biology. • Gain an appreciation of how current research in the field is being done by reading recent research papers. Textbooks and Additional Resources: Laboratory fee: $25; please bring to first lab. -
Ethylene in Floriculture
technically speaking BY ERIK RUNKLE Ethylene in Floriculture Ethylene is a hormone that influences growth and development of plants throughout their life cycle. It is a colorless gas that is active at very low concentrations, even at parts per billion (which is 0.001 part per million). For most crops, ethylene inhibits extension growth, promotes branching, stimulates leaf senescence, and aborts flowers and flower buds. Ethylene can be a harmful contaminant in greenhouses, as well as during shipping of young plants to greenhouses and finished (flowering) plants to the retail market. However, there are situations when ethylene can elicit desirable responses in greenhouse crop production. This article summarizes inadvertent and intentional ethylene exposure to floriculture crops. Unwanted ethylene in greenhouses. Plants naturally produce ethylene, but this alone is not a concern Figure 1. If growth of plants is stunted, flowering is delayed, in greenhouses because concentrations are so low. or leaves start to twist or curl, ethylene contamination may be Ethylene contamination usually occurs when there is the problem. Check unit heaters to ensure adequate oxygen is insufficient oxygen provided to unit heaters (resulting in provided for complete combustion of fuels, and that the exhaust is incomplete combustion of fuels), or when the exhaust is sufficiently ventilated. inadequately vented. The effects of ethylene depend on the concentration, duration of exposure, temperature, State) as well as by private consultants has shown that Collate is and species. At a relatively high concentration, such as effective at lower drench rates, such as 20 to 40 ppm on bedding 1 or 2 ppm, symptoms of ethylene exposure are quite plants and 200 to 250 ppm on potted daffodils. -
Revised Glossary for AQA GCSE Biology Student Book
Biology Glossary amino acids small molecules from which proteins are A built abiotic factor physical or non-living conditions amylase a digestive enzyme (carbohydrase) that that affect the distribution of a population in an breaks down starch ecosystem, such as light, temperature, soil pH anaerobic respiration respiration without using absorption the process by which soluble products oxygen of digestion move into the blood from the small intestine antibacterial chemicals chemicals produced by plants as a defence mechanism; the amount abstinence method of contraception whereby the produced will increase if the plant is under attack couple refrains from intercourse, particularly when an egg might be in the oviduct antibiotic e.g. penicillin; medicines that work inside the body to kill bacterial pathogens accommodation ability of the eyes to change focus antibody protein normally present in the body acid rain rain water which is made more acidic by or produced in response to an antigen, which it pollutant gases neutralises, thus producing an immune response active site the place on an enzyme where the antimicrobial resistance (AMR) an increasing substrate molecule binds problem in the twenty-first century whereby active transport in active transport, cells use energy bacteria have evolved to develop resistance against to transport substances through cell membranes antibiotics due to their overuse against a concentration gradient antiretroviral drugs drugs used to treat HIV adaptation features that organisms have to help infections; they -
Floral Notes Newsletter
A Publication of the UMass Extension Greenhouse Crops & Floriculture Program Floral Notes Newsletter Volume 28, No. 6 http://extension.umass.edu/floriculture May-June 2016 In This Issue New Fungicide Products for Greenhouse Ornamental Production ..................................................... 2 Take Steps to Prevent and Control Botrytis in Greenhouse Crops ....................................................... 3 Retail Care: Watering, Cleaning, Fertilizing ...................................................................................... 5 Garden Mums - Early Season ........................................................................................................... 6 Silicon for Greenhouse Floriculture Crops? ...................................................................................... 6 New Advances for Biological Controls for Indoor and Outdoor Production of Ornamentals Co‐sponsored by UConn Extension and UMass Extension Floriculture Program Tuesday, June 21, 2016 Room 331, Student Union, University of Connecticut, Storrs, CT New Developments You Can Use from Bio‐control Research John Sanderson, Cornell University, Ithaca, NY Bio‐control Developments on a Global Level Ron Valentin, Bioline Agrosciences, Oxnard, CA Biological Control Agents (BCA) Use in Perennial Growing, Roger McGaughey, Pioneer Gardens, Deerfield, MA Good Garden Bugs: Identifying Native Predators and Parasitoids, Common in Outdoor Ornamental Production Mary Gardiner, Ohio State University, Wooster, OH Encouraging Beneficials to Enhance Biological -
Untangling Phylogenetic Patterns and Taxonomic Confusion in Tribe Caryophylleae (Caryophyllaceae) with Special Focus on Generic
TAXON 67 (1) • February 2018: 83–112 Madhani & al. • Phylogeny and taxonomy of Caryophylleae (Caryophyllaceae) Untangling phylogenetic patterns and taxonomic confusion in tribe Caryophylleae (Caryophyllaceae) with special focus on generic boundaries Hossein Madhani,1 Richard Rabeler,2 Atefeh Pirani,3 Bengt Oxelman,4 Guenther Heubl5 & Shahin Zarre1 1 Department of Plant Science, Center of Excellence in Phylogeny of Living Organisms, School of Biology, College of Science, University of Tehran, P.O. Box 14155-6455, Tehran, Iran 2 University of Michigan Herbarium-EEB, 3600 Varsity Drive, Ann Arbor, Michigan 48108-2228, U.S.A. 3 Department of Biology, Faculty of Sciences, Ferdowsi University of Mashhad, P.O. Box 91775-1436, Mashhad, Iran 4 Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 40530 Göteborg, Sweden 5 Biodiversity Research – Systematic Botany, Department of Biology I, Ludwig-Maximilians-Universität München, Menzinger Str. 67, 80638 München, Germany; and GeoBio Center LMU Author for correspondence: Shahin Zarre, [email protected] DOI https://doi.org/10.12705/671.6 Abstract Assigning correct names to taxa is a challenging goal in the taxonomy of many groups within the Caryophyllaceae. This challenge is most serious in tribe Caryophylleae since the supposed genera seem to be highly artificial, and the available morphological evidence cannot effectively be used for delimitation and exact determination of taxa. The main goal of the present study was to re-assess the monophyly of the genera currently recognized in this tribe using molecular phylogenetic data. We used the sequences of nuclear ribosomal internal transcribed spacer (ITS) and the chloroplast gene rps16 for 135 and 94 accessions, respectively, representing all 16 genera currently recognized in the tribe Caryophylleae, with a rich sampling of Gypsophila as one of the most heterogeneous groups in the tribe. -
Congolius, a New Genus of African Reed Frog Endemic to The
www.nature.com/scientificreports OPEN Congolius, a new genus of African reed frog endemic to the central Congo: A potential case of convergent evolution Tadeáš Nečas1,2*, Gabriel Badjedjea3, Michal Vopálenský4 & Václav Gvoždík1,5* The reed frog genus Hyperolius (Afrobatrachia, Hyperoliidae) is a speciose genus containing over 140 species of mostly small to medium-sized frogs distributed in sub-Saharan Africa. Its high level of colour polymorphism, together with in anurans relatively rare sexual dichromatism, make systematic studies more difcult. As a result, the knowledge of the diversity and taxonomy of this genus is still limited. Hyperolius robustus known only from a handful of localities in rain forests of the central Congo Basin is one of the least known species. Here, we have used molecular methods for the frst time to study the phylogenetic position of this taxon, accompanied by an analysis of phenotype based on external (morphometric) and internal (osteological) morphological characters. Our phylogenetic results undoubtedly placed H. robustus out of Hyperolius into a common clade with sympatric Cryptothylax and West African Morerella. To prevent the uncovered paraphyly, we place H. robustus into a new genus, Congolius. The review of all available data suggests that the new genus is endemic to the central Congolian lowland rain forests. The analysis of phenotype underlined morphological similarity of the new genus to some Hyperolius species. This uniformity of body shape (including cranial shape) indicates that the two genera have either retained ancestral morphology or evolved through convergent evolution under similar ecological pressures in the African rain forests. African reed frogs, Hyperoliidae Laurent, 1943, are presently encompassing almost 230 species in 17 genera. -
Genomic Analysis of the Tribe Emesidini (Lepidoptera: Riodinidae)
Zootaxa 4668 (4): 475–488 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2019 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4668.4.2 http://zoobank.org/urn:lsid:zoobank.org:pub:211AFB6A-8C0A-4AB2-8CF6-981E12C24934 Genomic analysis of the tribe Emesidini (Lepidoptera: Riodinidae) JING ZHANG1, JINHUI SHEN1, QIAN CONG1,2 & NICK V. GRISHIN1,3 1Departments of Biophysics and Biochemistry, University of Texas Southwestern Medical Center, and 3Howard Hughes Medical Insti- tute, 5323 Harry Hines Blvd, Dallas, TX, USA 75390-9050; [email protected] 2present address: Institute for Protein Design and Department of Biochemistry, University of Washington, 1959 NE Pacific Street, HSB J-405, Seattle, WA, USA 98195; [email protected] Abstract We obtained and phylogenetically analyzed whole genome shotgun sequences of nearly all species from the tribe Emesidini Seraphim, Freitas & Kaminski, 2018 (Riodinidae) and representatives from other Riodinidae tribes. We see that the recently proposed genera Neoapodemia Trujano, 2018 and Plesioarida Trujano & García, 2018 are closely allied with Apodemia C. & R. Felder, [1865] and are better viewed as its subgenera, new status. Overall, Emesis Fabricius, 1807 and Apodemia (even after inclusion of the two subgenera) are so phylogenetically close that several species have been previously swapped between these two genera. New combinations are: Apodemia (Neoapodemia) zela (Butler, 1870), Apodemia (Neoapodemia) ares (Edwards, 1882), and Apodemia (Neoapodemia) arnacis (Stichel, 1928) (not Emesis); and Emesis phyciodoides (Barnes & Benjamin, 1924) (not Apodemia), assigned to each genus by their monophyly in genomic trees with the type species (TS) of the genus. -
Fall Color Is a Byproduct of the Physiological Response of Temperate-Zone Plants to Shortening Days
Printed in: Southwest Horticulture (2001) 18(6):6 The Colors of Fall Ursula Schuch, Plant Sciences Department, University of Arizona, Tucson Cool nights and warm, sunny days signal the onset of fall, and perfect weather for the development of brilliant crimson, gold, copper or yellow foliage. Fall color is a byproduct of the physiological response of temperate-zone plants to shortening days. Best fall colors are generally seen in deciduous, broadleaf woody plants that originate in USDA zones 3 to 9. In Arizona, fall color is scarce in the low desert, but is displayed more generously at higher elevations. Chlorophyll is responsible for the green color of leaves or stems and enables plants to produce sugars through the process of photosynthesis. In green leaves, chlorophyll is the dominant pigment. Visible light is absorbed by pigments, and leaves appear green because chlorophyll absorbs red and blue light while transmitting and reflecting green light. Carotenoids are accessory pigments in the photosynthesis process with colors in shades of yellow to orange; however, they are much less abundant than chlorophyll. Starting in spring, when plant growth begins for temperate-zone plants, and throughout summer, chlorophyll is continuously produced in the growing leaves to enable maximum food production. This is the time of greatest stem elongation, new leaf production, and growth in girth. As summer transitions into fall, plants respond to shorter days with reduced stem elongation, initiation of leaf abscission, reduced chlorophyll production, and increased production of other pigments. This marks the onset of dormancy and the beginning of frost hardiness. The splendor of fall color begins when chlorophyll production declines in the leaves and when the less abundant carotenoids unveil yellow to orange hues, or anthocyanins flaunt colors of red and purple. -
Principles of Plant Taxonomy, V.*
THE OHIO JOURNAL OF SCIENCE VOL. XXVIII MARCH, 1928 No. 2 PRINCIPLES OF PLANT TAXONOMY, V.* JOHN H. SCHAFFNER, Ohio State University. After studying the taxonomy of plants for twenty-five years the very remarkable fact became evident that there is no general correspondence of the taxonomic system with the environment, but as the great paleontologist, Williams, said in 1895: "environmental conditions are but the medium through which organic evolution has been determinately ploughing its way." Of course, the very fact that there is a system of phylogenetic relationships of classes, orders, families, and genera and that these commonly have no general correspondence to environment shows that, in classifying the plant material, we must discard all notions of teleological, utilitarian, and selective factors as causative agents of evolution. The general progressive movement has been carried on along quite definite lines. The broader and more fundamental changes appeared first and are practically constant, and on top of these, .potentialities or properties of smaller and smaller value have been introduced, until at the end new factors of little general importance alone are evolved. These small potentialities are commonly much less stable than the more fundamental ones and thus great variability in subordinate characters is often present in the highest groups. We must then think of the highest groups as being full of hereditary potentialities while the lower groups have comparatively few. As stated above, there is a profound non-correspondence of the .taxonomic system and the various orthogenetic series with the environment. The system of plants, from the taxonomic point of view, is non-utilitarian.