Phycocyanin-Mediated Apoptosis in AK-5 Tumor Cells Involves Down-Regulation of Bcl-2 and Generation of ROS
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Patterns of Green Fluorescent Protein Expression in Transgenic Plants
Color profile: Generic CMYK printer profile Composite Default screen Plant Molecular Biology Reporter 18: 141a–141i, 2000 © 2000 International Society for Plant Molecular Biology. Printed in Canada. Publish by Abstract Patterns of Green Fluorescent Protein Expression in Transgenic Plants BRIAN K. HARPER1 and C. NEAL STEWART JR.2,* 1Novartis Agricultural Biotechnology Research, Inc., 3054 Cornwallis Rd., Research Triangle Park, NC 27709; 2Dept of Biology, University of North Carolina, Greensboro, NC 27402-6174 Abstract. Modified forms of genes encoding green fluorescent protein (GFP) can be mac- roscopically detected when expressed in whole plants. This technology has opened up new uses for GFP such as monitoring transgene presence and expression in the environment once it is linked or fused to a gene of interest. When whole-plant or whole-organ GFP vi- sualization is required, GFP should be predictably expressed and reliably fluorescent. In this study the whole plant expression and fluorescence patterns of a mGFP5er gene driven by the cauliflower mosaic virus 35S promoter was studied in intact GFP-expressing trans- genic tobacco (Nicotiana tabacum cv. Xanthi). It was shown that GFP synthesis levels in single plant organs were similar to GUS activity levels from published data when driven by the same promoter. Under the control of the 35S promoter, high expression of GFP can be used to visualize stems, young leaves, flowers, and organs where the 35S promoter is most active. Modified forms of GFP could replace GUS as the visual marker gene of choice. Key words: expression patterns, green fluorescent protein, marker genes Patterns of IntroductionGFP expression Harper and Stewart Since the discovery of green fluorescent protein (GFP) from the jellyfish Aequorea victoria it has become a frequently used tool in biology. -
Supplementary Materials and Method Immunostaining and Western Blot
Supplementary Materials and Method Immunostaining and Western Blot Analysis For immunofluorescence staining, mouse and human cells were fixed with 4% paraformaldehyde- PBS for 15 min. Following Triton-X100 permeabilization and blocking, cells were incubated with primary antibodies overnight at 4°C following with Alexa 594-conjugated secondary antibodies at 4°C for 1 hour (Thermo Fisher Scientific, 1:1000). Samples were mounted using VECTASHIELD Antifade Mounting Medium with DAPI (Vector Laboratories) and immunofluorescence was detected using Olympus confocal microscopy. For western blot analysis, cells were lysed on ice using RIPA buffer supplemented with protease and phosphatase inhibitors (Sigma). Primary Antibodies for Immunostaining and Western Blot Analysis: Yap (14074, Cell Signaling), pYAP (4911, Cell Signaling), Lats1 (3477, Cell Signaling), pLats1( 8654, Cell Signaling), Wnt5a (2530, Cell Signaling), cleaved Caspase-3 (9661, Cell Signaling), Ki-67 (VP-K451, Vector Laboratories), Cyr61 (sc-13100, Santa Cruz Biotechnology), CTGF (sc-14939, Santa Cruz Biotechnology), AXL (8661, Cell Signaling), pErk (4376, Cell Signaling), pMEK (4376, Cell Signaling), Ck-19 (16858-1-AP, Proteintech), Actin (A2228, Sigma Aldrich), Vinculin (V4139, Sigma Aldrich), Kras (sc-30, Santa Cruz Biotechnology). Ectopic expression of YAP1 and WNT5A in mouse and human cells To generate YAP1S127A-expressing stable Pa04C cells, Pa04C cells were transfected with a linearized pcDNA3.1 plasmid with or without YAP1 cDNA containing S127A substitution. Two days post-transfection using Lipofectamine1000, cultures were selected in G418 (Sigma) and single clones were picked and expanded for further analysis. Overexpression of YAPS127A or WNT5A in human or mouse cells other than Pa04C were acheieved with lentivral infection. Briefly, lentivirus infection was performed by transfecting 293T cells with either GFP control, YAP1S127A, or WNT5A cloned in pHAGE lentivirus vector {EF1α promoter-GW-IRES-eGFP (GW: Gateway modified)}. -
Digestion by Pepsin Releases Biologically Active Chromopeptides from C-Phycocyanin, a Blue-Colored Biliprotein of Microalga Spir
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Faculty of Chemistry Repository - Cherry ÔØ ÅÒÙ×Ö ÔØ Digestion by pepsin releases biologically active chromopeptides from C- phycocyanin, a blue-colored biliprotein of microalga Spirulina Simeon L. Minic, Dragana Stanic-Vucinic, Jelena Vesic, Maja Krstic, Milan R. Nikolic, Tanja Cirkovic Velickovic PII: S1874-3919(16)30111-7 DOI: doi: 10.1016/j.jprot.2016.03.043 Reference: JPROT 2483 To appear in: Journal of Proteomics Received date: 30 November 2015 Revised date: 2 March 2016 Accepted date: 28 March 2016 Please cite this article as: Minic Simeon L., Stanic-Vucinic Dragana, Vesic Jelena, Krstic Maja, Nikolic Milan R., Velickovic Tanja Cirkovic, Digestion by pepsin releases biologi- cally active chromopeptides from C-phycocyanin, a blue-colored biliprotein of microalga Spirulina, Journal of Proteomics (2016), doi: 10.1016/j.jprot.2016.03.043 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. ACCEPTED MANUSCRIPT Digestion by pepsin releases biologically active chromopeptides from C- phycocyanin, a blue-colored biliprotein of microalga Spirulina -
Regulation of Pigment Content and Enzyme Activity in the Cyanobacterium Nostoc Sp. Mac Grown in Continuous Light, a Light-Dark Photoperiod, Or Darkness
BBIBIOCHIMICA ET BIOPHYSICA ACTA ELSEVIER Biochimica et Biophysica Acta 1277 (1996) 141 - 149 Regulation of pigment content and enzyme activity in the cyanobacterium Nostoc sp. Mac grown in continuous light, a light-dark photoperiod, or darkness Patricia A. Austin, I. Stuart Ross, John D. Mills Department of Biological Sciences, Keele Uniz'ersit3', Keele, Staffs, ST5 5BG, Staff~, UK Received 23 January 1996; accepted 17 July 1996 Abstract Both short-term and long-term adaptations of cyanobacterial metabolism to light and dark were studied in Nostoc sp. Mac. Long-term adaptations were induced by growing cells in the presence of glucose under (a) 30 wE m ~- s- ~ continuous white light, (b) under a 14/10 h light/dark cycle, or (c) complete darkness. Short-term regulation of enzyme activities by light was then studied in cells rendered osmotically fragile with lysozyme. Cells were briefly illuminated then enzyme activities were measured following rapid lysis in a hypotonic assay medium. The following results were obtained. (1) Relative to fresh weight, dark-grown cells contained less chlorophyll, much less phycoerythrin, but similar amounts of phycocyanin compared to cells grown under either light regime. Relative to chlorophyll, the higher phycocyanin and much lower phycoerythrin in the dark-grown vs light-grown cells resembles long term changes in pigment content that occur during complementary chromatic adaptation to red vs orange light. (2) Both dark and light/dark grown cells displayed generally lowered photosynthetic activities compared to light-grown cells. The exception to this was the activity of fructose 1,6-bisphosphatase, which was higher in dark-grown cells. -
Scholarworks@UNO
University of New Orleans ScholarWorks@UNO University of New Orleans Theses and Dissertations Dissertations and Theses Summer 8-4-2011 Identification and characterization of enzymes involved in the biosynthesis of different phycobiliproteins in cyanobacteria Avijit Biswas University of New Orleans, [email protected] Follow this and additional works at: https://scholarworks.uno.edu/td Part of the Biochemistry, Biophysics, and Structural Biology Commons Recommended Citation Biswas, Avijit, "Identification and characterization of enzymes involved in the biosynthesis of different phycobiliproteins in cyanobacteria" (2011). University of New Orleans Theses and Dissertations. 446. https://scholarworks.uno.edu/td/446 This Dissertation-Restricted is protected by copyright and/or related rights. It has been brought to you by ScholarWorks@UNO with permission from the rights-holder(s). You are free to use this Dissertation-Restricted in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you need to obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/or on the work itself. This Dissertation-Restricted has been accepted for inclusion in University of New Orleans Theses and Dissertations by an authorized administrator of ScholarWorks@UNO. For more information, please contact [email protected]. Identification and characterization of enzymes involved in biosynthesis of different phycobiliproteins in cyanobacteria A Thesis Submitted to the Graduate Faculty of the University of New Orleans in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Chemistry (Biochemistry) By Avijit Biswas B.S. -
Development and Applications of Superfolder and Split Fluorescent Protein Detection Systems in Biology
International Journal of Molecular Sciences Review Development and Applications of Superfolder and Split Fluorescent Protein Detection Systems in Biology Jean-Denis Pedelacq 1,* and Stéphanie Cabantous 2,* 1 Institut de Pharmacologie et de Biologie Structurale, IPBS, Université de Toulouse, CNRS, UPS, 31077 Toulouse, France 2 Centre de Recherche en Cancérologie de Toulouse (CRCT), Inserm, Université Paul Sabatier-Toulouse III, CNRS, 31037 Toulouse, France * Correspondence: [email protected] (J.-D.P.); [email protected] (S.C.) Received: 15 June 2019; Accepted: 8 July 2019; Published: 15 July 2019 Abstract: Molecular engineering of the green fluorescent protein (GFP) into a robust and stable variant named Superfolder GFP (sfGFP) has revolutionized the field of biosensor development and the use of fluorescent markers in diverse area of biology. sfGFP-based self-associating bipartite split-FP systems have been widely exploited to monitor soluble expression in vitro, localization, and trafficking of proteins in cellulo. A more recent class of split-FP variants, named « tripartite » split-FP,that rely on the self-assembly of three GFP fragments, is particularly well suited for the detection of protein–protein interactions. In this review, we describe the different steps and evolutions that have led to the diversification of superfolder and split-FP reporter systems, and we report an update of their applications in various areas of biology, from structural biology to cell biology. Keywords: fluorescent protein; superfolder; split-GFP; bipartite; tripartite; folding; PPI 1. Superfolder Fluorescent Proteins: Progenitor of Split Fluorescent Protein (FP) Systems Previously described mutations that improve the physical properties and expression of green fluorescent protein (GFP) color variants in the host organism have already been the subject of several reviews [1–4] and will not be described here. -
Intrinsic Indicators for Specimen Degradation
Laboratory Investigation (2013) 93, 242–253 & 2013 USCAP, Inc All rights reserved 0023-6837/13 $32.00 Intrinsic indicators for specimen degradation Jie Li1, Catherine Kil1, Kelly Considine1, Bartosz Smarkucki1, Michael C Stankewich1, Brian Balgley2 and Alexander O Vortmeyer1 Variable degrees of molecular degradation occur in human surgical specimens before clinical examination and severely affect analytical results. We therefore initiated an investigation to identify protein markers for tissue degradation assessment. We exposed 4 cell lines and 64 surgical/autopsy specimens to defined periods of time at room temperature before procurement (experimental cold ischemic time (CIT)-dependent tissue degradation model). Using two-dimen- sional fluorescence difference gel electrophoresis in conjunction with mass spectrometry, we performed comparative proteomic analyses on cells at different CIT exposures and identified proteins with CIT-dependent changes. The results were validated by testing clinical specimens with western blot analysis. We identified 26 proteins that underwent dynamic changes (characterized by continuous quantitative changes, isoelectric changes, and/or proteolytic cleavages) in our degradation model. These changes are strongly associated with the length of CIT. We demonstrate these proteins to represent universal tissue degradation indicators (TDIs) in clinical specimens. We also devised and implemented a unique degradation measure by calculating the quantitative ratio between TDIs’ intact forms and their respective degradation- -
Investigations on the Impact of Toxic Cyanobacteria on Fish : As
INVESTIGATIONS ON THE IMPACT OF TOXIC CYANOBACTERIA ON FISH - AS EXEMPLIFIED BY THE COREGONIDS IN LAKE AMMERSEE - DISSERTATION Zur Erlangung des akademischen Grades des Doktors der Naturwissenschaften an der Universität Konstanz Fachbereich Biologie Vorgelegt von BERNHARD ERNST Tag der mündlichen Prüfung: 05. Nov. 2008 Referent: Prof. Dr. Daniel Dietrich Referent: Prof. Dr. Karl-Otto Rothhaupt Referent: Prof. Dr. Alexander Bürkle 2 »Erst seit gestern und nur für einen Tag auf diesem Planeten weilend, können wir nur hoffen, einen Blick auf das Wissen zu erhaschen, das wir vermutlich nie erlangen werden« Horace-Bénédict de Saussure (1740-1799) Pionier der modernen Alpenforschung & Wegbereiter des Alpinismus 3 ZUSAMMENFASSUNG Giftige Cyanobakterien beeinträchtigen Organismen verschiedenster Entwicklungsstufen und trophischer Ebenen. Besonders bedroht sind aquatische Organismen, weil sie von Cyanobakterien sehr vielfältig beeinflussbar sind und ihnen zudem oft nur sehr begrenzt ausweichen können. Zu den toxinreichsten Cyanobakterien gehören Arten der Gattung Planktothrix. Hierzu zählt auch die Burgunderblutalge Planktothrix rubescens, eine Cyanobakterienart die über die letzten Jahrzehnte im Besonderen in den Seen der Voralpenregionen zunehmend an Bedeutung gewonnen hat. An einigen dieser Voralpenseen treten seit dem Erstarken von P. rubescens existenzielle, fischereiwirtschaftliche Probleme auf, die wesentlich auf markante Wachstumseinbrüche bei den Coregonenbeständen (Coregonus sp.; i.e. Renken, Felchen, etc.) zurückzuführen sind. So auch -
Immunohistochemistry Stain Offerings
immunohistochemistry stain offerings TRUSTED PATHOLOGISTS. INVALUABLE ANSWERS.™ MARCHMAY 20172021 www.aruplab.com/ap-ihcaruplab.com/ap-ihc InformationInformation in this brochurein this brochure is current is current as of as May of March 2021. 2017. All content All content is subject is subject to tochange. change. Please contactPlease ARUPcontact ClientARUP Services Client Services at 800-522-2787 at (800) 522-2787 with any with questions any questions or concerns.or concerns. ARUP LABORATORIES As a nonprofit, academic institution of the University of Utah and its Department We believe in of Pathology, ARUP believes in collaborating, sharing and contributing to laboratory science in ways that benefit our clients and their patients. collaborating, Our test menu is one of the broadest in the industry, encompassing more sharing and than 3,000 tests, including highly specialized and esoteric assays. We offer comprehensive testing in the areas of genetics, molecular oncology, pediatrics, contributing pain management, and more. to laboratory ARUP’s clients include many of the nation’s university teaching hospitals and children’s hospitals, as well as multihospital groups, major commercial science in ways laboratories, and group purchasing organizations. We believe that healthcare should be delivered as close to the patient as possible, which is why we support that provide our clients’ efforts to be the principal healthcare provider in the communities they serve by offering highly complex assays and accompanying consultative support. the best value Offering analytics, consulting, and decision support services, ARUP provides for the patient. clients with the utilization management tools necessary to prosper in this time of value-based care. -
Phytochrome from Agrobacterium Tumefaciens Has Unusual Spectral Properties and Reveals an N-Terminal Chromophore Attachment Site
Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment site Tilman Lamparter*, Norbert Michael, Franz Mittmann, and Berta Esteban Freie Universita¨t Berlin, Pflanzenphysiologie, Ko¨nigin Luise Strasse 12–16, D-14195 Berlin, Germany Edited by Winslow R. Briggs, Carnegie Institution of Washington, Stanford, CA, and approved May 30, 2002 (received for review May 2, 2002) Phytochromes are photochromic photoreceptors with a bilin chro- reversion has so far not been found in bacterial phytochromes. mophore that are found in plants and bacteria. The soil bacterium Cph1 of Synechocystis (17) and CphA of Calothrix (18) have a stable Agrobacterium tumefaciens contains two genes that code for Pfr form; reports on other bacterial orthologs are missing so far. phytochrome-homologous proteins, termed Agrobacterium phyto- Most bacterial phytochromes carry a histidine-kinase module, chrome 1 and 2 (Agp1 and Agp2). To analyze its biochemical and the first component of ‘‘two-component’’ systems. His-kinase spectral properties, Agp1 was purified from the clone of an E. coli activity is light-modulated; cyanobacterial phytochromes are overexpressor. The protein was assembled with the chromophores more active in the Pr form (19–21), whereas phytochrome BphP phycocyanobilin and biliverdin, which is the putative natural chro- from the proteobacterium Pseudomonas aeruginosa is more mophore, to photoactive holoprotein species. Like other bacterial active in the Pfr form (11). In general, His kinases transphos- phytochromes, Agp1 acts as light-regulated His kinase. The biliverdin phorylate particular response regulators (22); this mechanism adduct of Agp1 represents a previously uncharacterized type of also has been shown for bacterial phytochromes (11, 19, 21). -
Elongation Inhibitors Do Not Prevent the Release Of
RESEARCH ARTICLE Elongation inhibitors do not prevent the release of puromycylated nascent polypeptide chains from ribosomes Benjamin D Hobson1,2, Linghao Kong1, Erik W Hartwick3, Ruben L Gonzalez3, Peter A Sims1,4,5* 1Department of Systems Biology, Columbia University Irving Medical Center, New York, United States; 2Medical Scientist Training Program, Columbia University Irving Medical Center, New York, United States; 3Department of Chemistry, Columbia University, New York, United States; 4Department of Biochemistry & Molecular Biophysics, Columbia University Irving Medical Center, New York, United States; 5Sulzberger Columbia Genome Center, Columbia University Irving Medical Center, New York, United States Abstract Puromycin is an amino-acyl transfer RNA analog widely employed in studies of protein synthesis. Since puromycin is covalently incorporated into nascent polypeptide chains, anti- puromycin immunofluorescence enables visualization of nascent protein synthesis. A common assumption in studies of local messenger RNA translation is that the anti-puromycin staining of puromycylated nascent polypeptides in fixed cells accurately reports on their original site of translation, particularly when ribosomes are stalled with elongation inhibitors prior to puromycin treatment. However, when we attempted to implement a proximity ligation assay to detect ribosome-puromycin complexes, we found no evidence to support this assumption. We further demonstrated, using biochemical assays and live cell imaging of nascent polypeptides in mammalian cells, that puromycylated nascent polypeptides rapidly dissociate from ribosomes even in the presence of elongation inhibitors. Our results suggest that attempts to define precise *For correspondence: subcellular translation sites using anti-puromycin immunostaining may be confounded by release of [email protected] puromycylated nascent polypeptide chains prior to fixation. -
Tubulin Or Not Tubulin: Heading Toward Total Protein Staining As Loading Control in Western Blots Christian Moritz
Tubulin or Not Tubulin: Heading Toward Total Protein Staining as Loading Control in Western Blots Christian Moritz To cite this version: Christian Moritz. Tubulin or Not Tubulin: Heading Toward Total Protein Staining as Loading Control in Western Blots. Proteomics, Wiley-VCH Verlag, 2017, 17 (20), 10.1002/pmic.201600189. hal- 01900776 HAL Id: hal-01900776 https://hal.archives-ouvertes.fr/hal-01900776 Submitted on 22 Oct 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. This is the pre-peer reviewed version of the following article: Moritz, C. P. (2017), Tubulin or not tubulin: Heading towards total protein staining as loading control in Western blots. Proteomics, 1600189. Accepted Author Manuscript. doi:10.1002/pmic.201600189 which has been published in final form at http://onlinelibrary.wiley.com/doi/10.1002/pmic.201600189/ab stract. If you have access, the final form is recommended as it differs in some parts from the pre-version. This version of the article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving. Pre-peer reviewed version of a review article published in PROTEOMICS Tubulin or not tubulin: Heading towards total protein staining as loading control in Western blots.