Chaperonin 10 from Escherichia Coli (C7438)
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"Hsp70 Chaperones"
Hsp70 Chaperones Advanced article Elizabeth A Craig, University of Wisconsin, Madison, Wisconsin, USA Article Contents . Introduction Jaroslaw Marszalek, University of Gdansk, Gdansk, Poland . Hsp70:Client Protein Interaction Cycle . Proliferation of Hsp70 and J-protein Genes . Function and Evolution of Mitochondrial Hsp70 Systems . Conclusions: Versatility of Hsp70 System Allows for Adaptation to New Functions Online posting date: 15th March 2011 Via their interaction with client proteins, Hsp70 molecu- stress. In some cases they also facilitate transfer of client lar chaperone machines function in a variety of cellular proteins to proteolytic systems, particularly when refolding processes, including protein folding, translocation of into the native state is unachievable. See also: Chaperones, proteins across membranes and assembly/disassembly of Chaperonin and Heat-Shock Proteins The ability of Hsp70 chaperones to be involved in such protein complexes. Such machines are composed of a core diverse cellular functions, whereas relying on a single bio- Hsp70, as well as a J-protein and a nucleotide exchange chemical activity, an adenosine triphosphate (ATP)- factor as co-chaperones. These co-factors regulate the dependent client binding and release cycle, is remarkable. cycle of adenosine triphosphate (ATP) hydrolysis and Here, to illustrate the molecular mechanisms and evo- nucleotide exchange, which is critical for Hsp70’s inter- lutionary history behind the specialisation of Hsp70 sys- action with client proteins. Cellular compartments often tems we focus on mitochondrial Hsp70 systems, as they contain multiple Hsp70s, J-proteins and nucleotide exemplify two major strategies of Hsp70 specialisation: exchange factors. The capabilities of Hsp70s to carry out (i) amplification and diversification of HSP70 genes and diverse cellular functions can result from either special- (ii) multiplication and specialisation of genes encoding isation of an Hsp70 or by interaction of a multifunctional their J-proteins co-chaperones (Figure 1). -
Global Analysis of Chaperone Effects Using a Reconstituted Cell-Free Translation System
Global analysis of chaperone effects using a reconstituted cell-free translation system Tatsuya Niwaa, Takashi Kanamorib,1, Takuya Uedab,2, and Hideki Taguchia,2 aDepartment of Biomolecular Engineering, Graduate School of Biosciences and Biotechnology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan; and bDepartment of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba 277-8562, Japan Edited by George H. Lorimer, University of Maryland, College Park, MD, and approved April 19, 2012 (received for review January 25, 2012) Protein folding is often hampered by protein aggregation, which can three chaperone systems are known to act cooperatively: TF and be prevented by a variety of chaperones in the cell. A dataset that DnaK exhibit overlapping cotranslational roles in vivo (13–15). evaluates which chaperones are effective for aggregation-prone Overexpression of DnaK/DnaJ and GroEL/GroES in E. coli proteins would provide an invaluable resource not only for un- rpoH mutant cells, which are deficient in heat-shock proteins, derstanding the roles of chaperones, but also for broader applications prevents aggregation of newly translated proteins (16). GroEL is in protein science and engineering. Therefore, we comprehensively believed to be involved in folding after the polypeptides are re- evaluated the effects of the major Escherichia coli chaperones, trigger leased from the ribosome, although the possible cotranslational factor, DnaK/DnaJ/GrpE, and GroEL/GroES, on ∼800 aggregation- involvement of GroEL has also been reported (17–20). prone cytosolic E. coli proteins, using a reconstituted chaperone-free Over the past two decades many efforts have been focused on translation system. -
XIAO-DISSERTATION-2015.Pdf
CELLULAR AND PROCESS ENGINEERING TO IMPROVE MAMMALIAN MEMBRANE PROTEIN EXPRESSION By Su Xiao A dissertation is submitted to Johns Hopkins University in conformity with the requirements for degree of Doctor of Philosophy Baltimore, Maryland May 2015 © 2015 Su Xiao All Rights Reserved Abstract Improving the expression level of recombinant mammalian proteins has been pursued for production of commercial biotherapeutics in industry, as well as for biomedical studies in academia, as an adequate supply of correctly folded proteins is a prerequisite for all structure and function studies. Presented in this dissertation are different strategies to improve protein functional expression level, especially for membrane proteins. The model protein is neurotensin receptor 1 (NTSR1), a hard-to- express G protein-coupled receptor (GPCR). GPCRs are integral membrane proteins playing a central role in cell signaling and are targets for most of the medicines sold worldwide. Obtaining adequate functional GPCRs has been a bottleneck in their structure studies because the expression of these proteins from mammalian cells is very low. The first strategy is the adoption of mammalian inducible expression system. A stable and inducible T-REx-293 cell line overexpressing an engineered rat NTSR1 was constructed. 2.5 million Functional copies of NTSR1 per cell were detected on plasma membrane, which is 167 fold improvement comparing to NTSR1 constitutive expression. The second strategy is production process development including suspension culture adaptation and induction parameter optimization. A further 3.5 fold improvement was achieved and approximately 1 milligram of purified functional NTSR1 per liter suspension culture was obtained. This was comparable yield to the transient baculovirus- insect cell system. -
Chaperonin Function: Folding by Forced Unfolding
R EPORTS (1985); N. Romani et al., ibid. 169, 1169 (1989); C. migrated was measured with the clonotypic antibody 26. J. G. Cyster, J. Exp. Med. 189, 447 (1999). Heufler et al., ibid. 176, 1221 (1992). to TCR KJ1-26 (28). Overnight incubation of day 2 27. G. G. MacPherson, C. D. Jenkins, M. J. Stein, C. Ed- 23. R. Bonecchi et al., ibid. 187, 129 (1998). draining lymph node cells (at 107 cells/ml) in medium wards, J. Immunol. 154, 1317 (1995). 24. Anti-OVA (DO11.10) T cell receptor (TCR) transgenic containing interleukin-2 (IL-2) (4 ng/ml) increased 28. K. Haskins et al., J. Exp. Med. 157, 1149 (1983). 1 lymph node cells (5 3 106 cells) were transferred to the sensitivity of activated KJ1-26 cells to MDC 29. We thank R. Locksley, S. Luther, K. Reif, and A. Weiss for comments on the manuscript; M. Ansel for help BALB/c mice that were immunized 1 day later with (14). Therefore, IL-2–cultured cells were used in ex- with the in vivo transfer experiments; and C. 100-mg OVA in Freund’s complete adjuvant (25). periments to detect chemokine production by puri- McArthur for cell sorting. Supported in part by NIH fied lymph node DCs and stromal cells. Draining (pool of brachial, axillary, and inguinal) and grant AI-40098, the Pew Foundation (J.G.C.), and the nondraining (mesenteric) lymph node cells were iso- 25. E. R. Kearney, K. A. Pape, D. Y. Loh, M. K. Jenkins, American Lung Association (H.L.T.). lated 1 to 5 days later and used in MDC chemotaxis Immunity 1, 327 (1994); K. -
Chaperonin-Assisted Protein Folding: a Chronologue
Quarterly Reviews of Chaperonin-assisted protein folding: Biophysics a chronologue cambridge.org/qrb Arthur L. Horwich1,2 and Wayne A. Fenton2 1Howard Hughes Medical Institute, Yale School of Medicine, Boyer Center, 295 Congress Avenue, New Haven, CT 06510, USA and 2Department of Genetics, Yale School of Medicine, Boyer Center, 295 Congress Avenue, New Invited Review Haven, CT 06510, USA Cite this article: Horwich AL, Fenton WA (2020). Chaperonin-assisted protein folding: a Abstract chronologue. Quarterly Reviews of Biophysics This chronologue seeks to document the discovery and development of an understanding of – 53, e4, 1 127. https://doi.org/10.1017/ oligomeric ring protein assemblies known as chaperonins that assist protein folding in the cell. S0033583519000143 It provides detail regarding genetic, physiologic, biochemical, and biophysical studies of these Received: 16 August 2019 ATP-utilizing machines from both in vivo and in vitro observations. The chronologue is orga- Revised: 21 November 2019 nized into various topics of physiology and mechanism, for each of which a chronologic order Accepted: 26 November 2019 is generally followed. The text is liberally illustrated to provide firsthand inspection of the key Key words: pieces of experimental data that propelled this field. Because of the length and depth of this Chaperonin; GroEL; GroES; Hsp60; protein piece, the use of the outline as a guide for selected reading is encouraged, but it should also be folding of help in pursuing the text in direct order. Author for correspondence: Arthur L. Horwich, E-mail: [email protected] Table of contents I. Foundational discovery of Anfinsen and coworkers – the amino acid sequence of a polypeptide contains all of the information required for folding to the native state 7 II. -
Mrvr, a Group B Streptococcus Transcription Factor That Controls Multiple Virulence Traits
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.17.386367; this version posted November 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 2 3 4 MrvR, a Group B Streptococcus Transcription Factor that Controls Multiple Virulence Traits 5 6 Allison N. Dammann1, Anna B. Chamby2, Andrew J. Catomeris3, Kyle M. Davidson4, Hervé 7 Tettelin5,6, Jan-Peter van Pijkeren7, Kathyayini P. Gopalakrishna4, Mary F. Keith4, Jordan L. 8 Elder4, Adam J. Ratner1,8, Thomas A. Hooven4,9* 9 10 1 Department of Pediatrics, New York University School of Medicine, New York, NY, USA 11 12 2 University of Vermont Larner College of Medicine, Burlington, VT, USA 13 14 3 Georgetown University School of Medicine, Washington, DC, USA 15 16 4 Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA 17 18 5 Department of Microbiology and Immunology, University of Maryland School of Medicine, 19 Baltimore, MD, USA 20 21 6 Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, 22 USA 23 24 7 Department of Food Science, University of Wisconsin, Madison, WI, USA 25 26 8 Department of Microbiology, New York University, New York, NY, USA 27 28 9 Richard King Mellon Institute for Pediatric Research, UPMC Children’s Hospital of Pittsburgh, 29 Pittsburgh, PA, USA 30 31 * Corresponding author 32 E-mail: [email protected] 33 bioRxiv preprint doi: https://doi.org/10.1101/2020.11.17.386367; this version posted November 17, 2020. -
Structure-Function Relationship and Their Role in Protein Folding
Chapter 8 1 Molecular Chaperones: Structure-Function 2 Relationship and their Role in Protein Folding 3 Bhaskar K. Chatterjee, Sarita Puri, Ashima Sharma, Ashutosh Pastor, 4 and Tapan K. Chaudhuri 5 Abstract During heat shock conditions a plethora of proteins are found to play a 6 role in maintaining cellular homeostasis. They play diverse roles from folding of 7 non-native proteins to the proteasomal degradation of harmful aggregates. A few 8 out of these heat shock proteins (Hsp) help in the folding of non-native substrate 9 proteins and are termed as molecular chaperones. Various structural and functional 10 adaptations make them work efficiently under both normal and stress conditions. 11 These adaptations involve transitions to oligomeric structures, thermal stability, 12 efficient binding affinity for substrates and co-chaperones, elevated synthesis during 13 shock conditions, switching between ‘holding’ and ‘folding’ functions etc. Their 14 ability to function under various kinds of stress conditions like heat shock, cancers, 15 neurodegenerative diseases, and in burdened cells due to recombinant protein pro- 16 duction makes them therapeutically and industrially important biomolecules. 17 Keywords Chaperone assisted folding · Heat shock · Molecular chaperones · 18 Protein folding · Structure-function of chaperones 19 Abbreviations 20 ACD α-crystallin domain 21 ADP Adenosine di-phosphate 22 ATP Adenosine tri-phosphate 23 CCT Chaperonin containing TCP-1 24 CIRCE Controlling inverted repeat of chaperone expression 25 Bhaskar K. Chatterjee, Sarita Puri, Ashima Sharma, and Ashutosh Pastor authors are equally contributed. B. K. Chatterjee · S. Puri · A. Sharma · A. Pastor · T. K. Chaudhuri (*) Kusuma School of Biological Sciences, Indian Institute of Technology Delhi, HauzKhas, New Delhi, India e-mail: [email protected] © Springer International Publishing AG 2018 181 A. -
Engineering Proteins with GFP: Study of Protein-Protein Interactions in Vivo, Protein Expression and Solubility
Engineering Proteins with GFP: Study of Protein-Protein Interactions In vivo, Protein Expression and Solubility Dissertation Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Mohosin M. Sarkar, M. Sc. Graduate Program in Chemistry The Ohio State University 2009 Dissertation Committee: Thomas J. Magliery, Advisor Dennis Bong Ross E. Dalbey Christopher M. Hadad Copyright by Mohosin M. Sarkar 2009 Abstract Protein–protein interactions (PPIs) play a key role in most biological processes. Many of these interactions are necessary for cell survival. To understand the molecular mechanisms of biological processes, it is essential to study and characterize protein-protein interactions, identify interacting partners and protein interaction networks. There are a number of methods that have been developed to study protein-protein interactions in vitro and in vivo, such as yeast-2-hybrid, fluorescence resonance energy transfer, co-immunoprecipitation, etc. Split protein reassembly is an in vivo probe of protein interactions that circumvents some of the problems with yeast 2- hybrid (indirect interactions, false positives) and co-immunoprecipitation (loss of weak and transient interactions, decompartmentalization). Split GFP reassembly is especially attractive because the GFP chromophore forms spontaneously on protein folding in almost every cell type. However, existing split systems have limitations of evolving cellular fluorescence slowly (3-4 days), failure to evolve at all for some interactions, and also failure to work at a physiological temperature. Among different variants of GFP tested, we found that split folding-reporter GFP (frGFP, a hybrid of EGFP and GFPuv) evolves fluorescence much faster (24 - 30 h) with associating peptides and also evolves fluorescence for the RING domain BRCA1/BARD1 wild type pair. -
Horizontal Gene Transfers and Cell Fusions in Microbiology, Immunology and Oncology (Review)
441-465.qxd 20/7/2009 08:23 Ì ™ÂÏ›‰·441 INTERNATIONAL JOURNAL OF ONCOLOGY 35: 441-465, 2009 441 Horizontal gene transfers and cell fusions in microbiology, immunology and oncology (Review) JOSEPH G. SINKOVICS St. Joseph's Hospital's Cancer Institute Affiliated with the H. L. Moffitt Comprehensive Cancer Center; Departments of Medical Microbiology/Immunology and Molecular Medicine, The University of South Florida College of Medicine, Tampa, FL 33607-6307, USA Received April 17, 2009; Accepted June 4, 2009 DOI: 10.3892/ijo_00000357 Abstract. Evolving young genomes of archaea, prokaryota or immunogenic genetic materials. Naturally formed hybrids and unicellular eukaryota were wide open for the acceptance of dendritic and tumor cells are often tolerogenic, whereas of alien genomic sequences, which they often preserved laboratory products of these unisons may be immunogenic in and vertically transferred to their descendants throughout the hosts of origin. As human breast cancer stem cells are three billion years of evolution. Established complex large induced by a treacherous class of CD8+ T cells to undergo genomes, although seeded with ancestral retroelements, have epithelial to mesenchymal (ETM) transition and to yield to come to regulate strictly their integrity. However, intruding malignant transformation by the omnipresent proto-ocogenes retroelements, especially the descendents of Ty3/Gypsy, (for example, the ras oncogenes), they become defenseless the chromoviruses, continue to find their ways into even the toward oncolytic viruses. Cell fusions and horizontal exchanges most established genomes. The simian and hominoid-Homo of genes are fundamental attributes and inherent characteristics genomes preserved and accommodated a large number of of the living matter. -
Role of CCT Chaperonin in the Disassembly of Mitotic Checkpoint Complexes
Role of CCT chaperonin in the disassembly of mitotic checkpoint complexes Sharon Kaisaria, Danielle Sitry-Shevaha, Shirly Miniowitz-Shemtova, Adar Teichnera, and Avram Hershkoa,1 aUnit of Biochemistry, Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 31096, Israel Contributed by Avram Hershko, December 14, 2016 (sent for review November 23, 2016; reviewed by Michele Pagano and Alexander Varshavsky) The mitotic checkpoint system prevents premature separation of thebindingoftheATPasetoMCC(13,14).TheenergyofATP sister chromatids in mitosis and thus ensures the fidelity of hydrolysis is apparently used in this process to promote a confor- chromosome segregation. When this checkpoint is active, a mitotic mational change of Mad2 back from C-Mad2 to O-Mad2, leading checkpoint complex (MCC), composed of the checkpoint proteins to loss of its affinity for Cdc20 in MCC and thus to Mad2 release. Mad2, BubR1, Bub3, and Cdc20, is assembled. MCC inhibits the By the action of TRIP13 and p31comet, MCC is converted to a ubiquitin ligase anaphase promoting complex/cyclosome (APC/C), remnant, called BC-1, in which Cdc20 is still associated with whose action is necessary for anaphase initiation. When the check- BubR1 (15). Cdc20 is released from BubR1 in MCC by a dif- point signal is turned off, MCC is disassembled, a process required ferent process involving the phosphorylation of Cdc20 by Cdk1 for exit from checkpoint-arrested state. Different moieties of MCC (16). We noticed, however, that a considerable part of the release are disassembled by different ATP-requiring processes. Previous of Cdc20 from MCC was due to a phosphorylation-independent, work showed that Mad2 is released from MCC by the joint action comet but ATP-dependent process (16). -
Functional Insights from the Distribution and Role of Homopeptide Repeat-Containing Proteins
Downloaded from genome.cshlp.org on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press Letter Functional insights from the distribution and role of homopeptide repeat-containing proteins Noel G. Faux,1,2,3 Stephen P. Bottomley,1,2 Arthur M. Lesk,1,2,6 James A. Irving,1,2,3 John R. Morrison,5 Maria Garcia de la Banda,2,3,4,7 and James C. Whisstock1,2,3,7 1Protein Crystallography Unit, Department of Biochemistry and Molecular Biology, 2Victorian Bioinformatics Consortium, 3ARC Centre for Structural and Functional Microbial Genomics, and 4School of Computer Science and Software Engineering, Monash University, Clayton Campus, Melbourne, VIC 3800, Australia; 5Monash Institute of Reproduction and Development, Monash University, Clayton, VIC 3168, Australia; 6Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA Expansion of “low complex” repeats of amino acids such as glutamine (Poly-Q) is associated with protein misfolding and the development of degenerative diseases such as Huntington’s disease. The mechanism by which such regions promote misfolding remains controversial, the function of many repeat-containing proteins (RCPs) remains obscure, and the role (if any) of repeat regions remains to be determined. Here, a Web-accessible database of RCPs is presented. The distribution and evolution of RCPs that contain homopeptide repeats tracts are considered, and the existence of functional patterns investigated. Generally, it is found that while polyamino acid repeats are extremely rare in prokaryotes, several eukaryote putative homologs of prokaryote RCP—involved in important housekeeping processes—retain the repetitive region, suggesting an ancient origin for certain repeats. -
Proteins to Exosomes Soluble Mycobacterial and Eukaryotic
Ubiquitination as a Mechanism To Transport Soluble Mycobacterial and Eukaryotic Proteins to Exosomes This information is current as Victoria L. Smith, Liam Jackson and Jeffrey S. Schorey of September 28, 2021. J Immunol published online 5 August 2015 http://www.jimmunol.org/content/early/2015/08/05/jimmun ol.1403186 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2015/08/05/jimmunol.140318 Material 6.DCSupplemental Why The JI? Submit online. http://www.jimmunol.org/ • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average by guest on September 28, 2021 Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2015 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published August 5, 2015, doi:10.4049/jimmunol.1403186 The Journal of Immunology Ubiquitination as a Mechanism To Transport Soluble Mycobacterial and Eukaryotic Proteins to Exosomes Victoria L. Smith, Liam Jackson, and Jeffrey S. Schorey Exosomes are extracellular vesicles of endocytic origin that function in intercellular communication. Our previous studies indicate that exosomes released from Mycobacterium tuberculosis-infected macrophages contain soluble mycobacterial proteins.