Mutations in Neuroligin-3 in Male Mice Impact Behavioral Flexibility but Not Relational Memory in a Touchscreen Test of Visual Transitive Inference Rebecca H
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The Classification of Esterases: an Important Gene Family Involved in Insecticide Resistance - a Review
Mem Inst Oswaldo Cruz, Rio de Janeiro, Vol. 107(4): 437-449, June 2012 437 The classification of esterases: an important gene family involved in insecticide resistance - A Review Isabela Reis Montella1,2, Renata Schama1,2,3/+, Denise Valle1,2,3 1Laboratório de Fisiologia e Controle de Artrópodes Vetores, Instituto Oswaldo Cruz-Fiocruz, Av. Brasil 4365, 21040-900 Rio de Janeiro, RJ, Brasil 2Instituto de Biologia do Exército, Rio de Janeiro, RJ, Brasil 3Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular, Rio de Janeiro, RJ, Brasil The use of chemical insecticides continues to play a major role in the control of disease vector populations, which is leading to the global dissemination of insecticide resistance. A greater capacity to detoxify insecticides, due to an increase in the expression or activity of three major enzyme families, also known as metabolic resistance, is one major resistance mechanisms. The esterase family of enzymes hydrolyse ester bonds, which are present in a wide range of insecticides; therefore, these enzymes may be involved in resistance to the main chemicals employed in control programs. Historically, insecticide resistance has driven research on insect esterases and schemes for their classification. Currently, several different nomenclatures are used to describe the esterases of distinct species and a universal standard classification does not exist. The esterase gene family appears to be rapidly evolving and each insect species has a unique complement of detoxification genes with only a few orthologues across species. The examples listed in this review cover different aspects of their biochemical nature. However, they do not appear to contribute to reliably distinguish among the different resistance mechanisms. -
Screening of a Clinically and Biochemically Diagnosed SOD Patient Using Exome Sequencing: a Case Report with a Mutations/Variations Analysis Approach
The Egyptian Journal of Medical Human Genetics (2016) 17, 131–136 HOSTED BY Ain Shams University The Egyptian Journal of Medical Human Genetics www.ejmhg.eg.net www.sciencedirect.com CASE REPORT Screening of a clinically and biochemically diagnosed SOD patient using exome sequencing: A case report with a mutations/variations analysis approach Mohamad-Reza Aghanoori a,b,1, Ghazaleh Mohammadzadeh Shahriary c,2, Mahdi Safarpour d,3, Ahmad Ebrahimi d,* a Department of Medical Genetics, Shiraz University of Medical Sciences, Shiraz, Iran b Research and Development Division, RoyaBioGene Co., Tehran, Iran c Department of Genetics, Shahid Chamran University of Ahvaz, Ahvaz, Iran d Cellular and Molecular Research Center, Research Institute for Endocrine Sciences, Shahid Beheshti University of Medical Sciences, Tehran, Iran Received 12 May 2015; accepted 15 June 2015 Available online 22 July 2015 KEYWORDS Abstract Background: Sulfite oxidase deficiency (SOD) is a rare neurometabolic inherited disor- Sulfite oxidase deficiency; der causing severe delay in developmental stages and premature death. The disease follows an auto- Case report; somal recessive pattern of inheritance and causes deficiency in the activity of sulfite oxidase, an Exome sequencing enzyme that normally catalyzes conversion of sulfite to sulfate. Aim of the study: SOD is an underdiagnosed disorder and its diagnosis can be difficult in young infants as early clinical features and neuroimaging changes may imitate some common diseases. Since the prognosis of the disease is poor, using exome sequencing as a powerful and efficient strat- egy for identifying the genes underlying rare mendelian disorders can provide important knowledge about early diagnosis, disease mechanisms, biological pathways, and potential therapeutic targets. -
Interaction of Acetylcholinesterase with Neurexin-1Β Regulates
Xiang et al. Molecular Brain 2014, 7:15 http://www.molecularbrain.com/content/7/1/15 RESEARCH Open Access Interaction of Acetylcholinesterase with Neurexin-1β regulates Glutamatergic Synaptic stability in Hippocampal neurons Yun-Yan Xiang1,2†, Haiheng Dong3†, Burton B Yang4, John F MacDonald1,2 and Wei-Yang Lu1,2,3,5* Abstract Background: Excess expression of acetylcholinesterase (AChE) in the cortex and hippocampus causes a decrease in the number of glutamatergic synapses and alters the expression of neurexin and neuroligin, trans-synaptic proteins that control synaptic stability. The molecular sequence and three-dimensional structure of AChE are homologous to the corresponding aspects of the ectodomain of neuroligin. This study investigated whether excess AChE interacts physically with neurexin to destabilize glutamatergic synapses. Results: The results showed that AChE clusters colocalized with neurexin assemblies in the neurites of hippocampal neurons and that AChE co-immunoprecipitated with neurexin from the lysate of these neurons. Moreover, when expressed in human embryonic kidney 293 cells, N-glycosylated AChE co-immunoprecipitated with non-O–glycosylated neurexin-1β,withN-glycosylation of the AChE being required for this co-precipitation to occur. Increasing extracellular AChE decreased the association of neurexin with neuroligin and inhibited neuroligin-induced synaptogenesis. The number and activity of excitatory synapses in cultured hippocampal neurons were reduced by extracellular catalytically inactive AChE. Conclusions: Excessive glycosylated AChE could competitively disrupt a subset of the neurexin–neuroligin junctions consequently impairing the integrity of glutamatergic synapses. This might serve a molecular mechanism of excessive AChE induced neurodegeneration. Keywords: Protein interaction, Glycosylation, Neurodegeneration, Synaptic apoptosis Introduction globular monomers and dimers of AChE-S. -
Environmental and Genetic Factors in Autism Spectrum Disorders: Special Emphasis on Data from Arabian Studies
International Journal of Environmental Research and Public Health Review Environmental and Genetic Factors in Autism Spectrum Disorders: Special Emphasis on Data from Arabian Studies Noor B. Almandil 1,† , Deem N. Alkuroud 2,†, Sayed AbdulAzeez 2, Abdulla AlSulaiman 3, Abdelhamid Elaissari 4 and J. Francis Borgio 2,* 1 Department of Clinical Pharmacy Research, Institute for Research and Medical Consultation (IRMC), Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia; [email protected] 2 Department of Genetic Research, Institute for Research and Medical Consultation (IRMC), Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia; [email protected] (D.N.A.); [email protected] (S.A.) 3 Department of Neurology, College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia; [email protected] or [email protected] 4 Univ Lyon, University Claude Bernard Lyon-1, CNRS, LAGEP-UMR 5007, F-69622 Lyon, France; [email protected] * Correspondence: [email protected] or [email protected]; Tel.: +966-13-333-0864 † These authors contributed equally to this work. Received: 26 January 2019; Accepted: 19 February 2019; Published: 23 February 2019 Abstract: One of the most common neurodevelopmental disorders worldwide is autism spectrum disorder (ASD), which is characterized by language delay, impaired communication interactions, and repetitive patterns of behavior caused by environmental and genetic factors. This review aims to provide a comprehensive survey of recently published literature on ASD and especially novel insights into excitatory synaptic transmission. Even though numerous genes have been discovered that play roles in ASD, a good understanding of the pathophysiologic process of ASD is still lacking. -
Excess of Rare Novel Loss-Of-Function Variants in Synaptic Genes in Schizophrenia and Autism Spectrum Disorders
Molecular Psychiatry (2014) 19, 872–879 & 2014 Macmillan Publishers Limited All rights reserved 1359-4184/14 www.nature.com/mp ORIGINAL ARTICLE Excess of rare novel loss-of-function variants in synaptic genes in schizophrenia and autism spectrum disorders EM Kenny1,3, P Cormican1,3, S Furlong1,3, E Heron1, G Kenny1, C Fahey1, E Kelleher1, S Ennis2, D Tropea1, R Anney1, AP Corvin1, G Donohoe1, L Gallagher1, M Gill1 and DW Morris1 Schizophrenia (SZ) and autism spectrum disorders (ASDs) are complex neurodevelopmental disorders that may share an underlying pathology suggested by shared genetic risk variants. We sequenced the exonic regions of 215 genes in 147 ASD cases, 273 SZ cases and 287 controls, to identify rare risk mutations. Genes were primarily selected for their function in the synapse and were categorized as: (1) Neurexin and Neuroligin Interacting Proteins, (2) Post-synaptic Glutamate Receptor Complexes, (3) Neural Cell Adhesion Molecules, (4) DISC1 and Interactors and (5) Functional and Positional Candidates. Thirty-one novel loss-of-function (LoF) variants that are predicted to severely disrupt protein-coding sequence were detected among 2 861 rare variants. We found an excess of LoF variants in the combined cases compared with controls (P ¼ 0.02). This effect was stronger when analysis was limited to singleton LoF variants (P ¼ 0.0007) and the excess was present in both SZ (P ¼ 0.002) and ASD (P ¼ 0.001). As an individual gene category, Neurexin and Neuroligin Interacting Proteins carried an excess of LoF variants in cases compared with controls (P ¼ 0.05). A de novo nonsense variant in GRIN2B was identified in an ASD case adding to the growing evidence that this is an important risk gene for the disorder. -
Acetylcholinesterase — New Roles for Gate a Relatively Long Distance to Reach the Active Site, Ache Is One of the Fastest an Old Actor Enzymes14
PERSPECTIVES be answered regarding AChE catalysis; for OPINION example, the mechanism behind the extremely fast turnover rate of the enzyme. Despite the fact that the substrate has to navi- Acetylcholinesterase — new roles for gate a relatively long distance to reach the active site, AChE is one of the fastest an old actor enzymes14. One theory to explain this phe- nomenon has to do with the unusually strong electric field of AChE. It has been argued that Hermona Soreq and Shlomo Seidman this field assists catalysis by attracting the cationic substrate and expelling the anionic The discovery of the first neurotransmitter — understanding of AChE functions beyond the acetate product15. Site-directed mutagenesis, acetylcholine — was soon followed by the classical view and suggest the molecular basis however, has indicated that reducing the elec- discovery of its hydrolysing enzyme, for its functional heterogeneity. tric field has no effect on catalysis16.However, acetylcholinesterase. The role of the same approach has indicated an effect on acetylcholinesterase in terminating From early to recent discoveries the rate of association of fasciculin, a peptide acetylcholine-mediated neurotransmission The unique biochemical properties and phys- that can inhibit AChE17. made it the focus of intense research for iological significance of AChE make it an much of the past century. But the complexity interesting target for detailed structure–func- of acetylcholinesterase gene regulation and tion analysis. AChE-coding sequences have recent evidence for some of the long- been cloned so far from a range of evolution- a Peripheral Choline binding site suspected ‘non-classical’ actions of this arily diverse vertebrate and invertebrate binding enzyme have more recently driven a species that include insects, nematodes, fish, site profound revolution in acetylcholinesterase reptiles, birds and several mammals, among Active site research. -
Neurexin–Neuroligin Signaling in Synapse Development Ann Marie Craig and Yunhee Kang
Neurexin–neuroligin signaling in synapse development Ann Marie Craig and Yunhee Kang Neurexins and neuroligins are emerging as central organizing and knockdown of neuroligins in culture led to the idea molecules for excitatory glutamatergic and inhibitory that these molecules control the balance of GABAergic GABAergic synapses in mammalian brain. They function as cell and glutamatergic inputs [4,5]. We focus our discussion adhesion molecules, bridging the synaptic cleft. Remarkably, here on studies from the past two years that address how each partner can trigger formation of a hemisynapse: alternative splicing in both neurexin and neuroligin tran- neuroligins trigger presynaptic differentiation and neurexins scripts regulates their function. We also discuss initial trigger postsynaptic differentiation. Recent protein interaction results from studies of knockout mice and disease-linked assays and cell culture studies indicate a selectivity of function mutations. conferred by alternative splicing in both partners. An insert at site 4 of b-neurexins selectively promotes GABAergic synaptic Structure of neurexins and neuroligins function, whereas an insert at site B of neuroligin 1 selectively There are three neurexin genes in mammals, each of promotes glutamatergic synaptic function. Initial knockdown which has both an upstream promoter that is used to and knockout studies indicate that neurexins and neuroligins generate the larger a-neurexins and a downstream pro- have an essential role in synaptic transmission, particularly at moter that is used to generate the b-neurexins (Figure 1) GABAergic synapses, but further studies are needed to assess [6]. Alternative splicing at five sites and N- and O-gly- the in vivo functions of these complex protein families. -
Mouse Nlgn3 Knockout Project (CRISPR/Cas9)
https://www.alphaknockout.com Mouse Nlgn3 Knockout Project (CRISPR/Cas9) Objective: To create a Nlgn3 knockout Mouse model (C57BL/6J) by CRISPR/Cas-mediated genome engineering. Strategy summary: The Nlgn3 gene (NCBI Reference Sequence: NM_172932 ; Ensembl: ENSMUSG00000031302 ) is located on Mouse chromosome X. 7 exons are identified, with the ATG start codon in exon 2 and the TAG stop codon in exon 7 (Transcript: ENSMUST00000065858). Exon 2~4 will be selected as target site. Cas9 and gRNA will be co-injected into fertilized eggs for KO Mouse production. The pups will be genotyped by PCR followed by sequencing analysis. Note: Homozygous null mice show impaired context and cued conditioning, hyperactivity, altered social behavior, less vocalization, smaller brains, and impaired olfaction. Males carrying a knock-in allele show impaired social interaction, and enhanced spatial learning and inhibitory synaptic transmission. Exon 2 starts from the coding region. Exon 2~4 covers 26.59% of the coding region. The size of effective KO region: ~7122 bp. The KO region does not have any other known gene. Page 1 of 9 https://www.alphaknockout.com Overview of the Targeting Strategy Wildtype allele 5' gRNA region gRNA region 3' 1 2 3 4 7 Legends Exon of mouse Nlgn3 Knockout region Page 2 of 9 https://www.alphaknockout.com Overview of the Dot Plot (up) Window size: 15 bp Forward Reverse Complement Sequence 12 Note: The 2000 bp section upstream of Exon 2 is aligned with itself to determine if there are tandem repeats. Tandem repeats are found in the dot plot matrix. The gRNA site is selected outside of these tandem repeats. -
Neuroligin3 Splice Isoforms Shape Mouse Hippocampal Inhibitory Synaptic Function
bioRxiv preprint doi: https://doi.org/10.1101/2020.01.22.915801; this version posted January 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Accelerated Communication Title Neuroligin3 Splice Isoforms Shape Mouse Hippocampal Inhibitory Synaptic Function Running Title Nlgn3 expression and function in mouse hippocampal neurons Motokazu Uchigashima1,2,5, Ming Leung3,5, Takuya Watanabe1,5, Amy Cheung1, Masahiko Watanabe2, Yuka Imamura Kawasawa3,4 and Kensuke Futai1* 1Brudnick Neuropsychiatric Research Institute, Department of Neurobiology, University of Massachusetts Medical School, 364 Plantation Street, LRB-706 Worcester, MA 01605-2324, USA 2Department of Anatomy, Hokkaido University Graduate School of Medicine, Sapporo, Hokkaido 060-8638, Japan 3Department of Biochemistry and Molecular Biology and Institute for Personalized Medicine, Pennsylvania State University College of Medicine, 500 University Drive, Hershey, Pennsylvania 17033, USA 4Department of Pharmacology Pennsylvania State University College of Medicine, 500 University Drive, Hershey, Pennsylvania 17033, USA 5These authors contributed equally *Corresponding author: [email protected] Tel: 1-774-455-4318 KEYWORDS Neuron, trans-synaptic cell adhesion, excitatory and inhibitory balance, hippocampus bioRxiv preprint doi: https://doi.org/10.1101/2020.01.22.915801; this version posted January 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. ABSTRACT Synapse formation is a dynamic process essential for neuronal circuit development and maturation. At the synaptic cleft, trans-synaptic protein-protein interactions constitute major biological determinants of proper synapse efficacy. -
Neuroligin 3 (Nlgn3) Knockout Rat
Genetically engineered models (GEMS) Neuroligin 3 (Nlgn3) knockout rat Model Neuroligin 3 (Nlgn3) knockout rat Strain HsdSage:SD- Nlgn3tm1sage Location U.S. Availability Cryopreserved Characteristics/husbandry Research use + This model was created in collaboration with Autism Speaks + Autism and is currently undergoing phenotypic characterization by + Asperger’s syndrome Dr. Richard Paylor at Baylor College of Medicine + Synaptic plasticity + Preliminary results suggest that Nlgn3 knockout rats are less anxious and exhibit decreased juvenile play, deficits in Origin sensorimotor gating and increased perseverative behaviors The Neuroligin 3 (Nlgn3) KO rat model was originally created + Homozygous knockout rats exhibit complete loss of target at SAGE Labs, Inc. in St. Louis, MO and distributed out of the protein as demonstrated by Western blot Boyertown, PA facility. The line continues to be maintained through the original SAGE Labs animal inventory acquired by + Mutations in Nlgn3 have been associated with autism and Asperger’s syndrome Envigo. + Nlgn3 is a member of the broader neuroligins, neuronal cell surface proteins thought to play a role in synaptic plasticity Description This model contains a biallelic deletion of the neuroligin 3 gene + Background strain: Sprague Dawley (Nlgn3). Mutations in Nlgn3 have been linked with autism and Asperger’s syndrome. This model is useful for understanding Zygosity genotype the role of neuroligins in the development of autism spectrum disorders. + Cryopreserved as heterozygous embryos Neuroligins -
Advances in Autism Genetics: on the Threshold of a New Neurobiology
REVIEWS Advances in autism genetics: on the threshold of a new neurobiology Brett S. Abrahams and Daniel H. Geschwind Abstract | Autism is a heterogeneous syndrome defined by impairments in three core domains: social interaction, language and range of interests. Recent work has led to the identification of several autism susceptibility genes and an increased appreciation of the contribution of de novo and inherited copy number variation. Promising strategies are also being applied to identify common genetic risk variants. Systems biology approaches, including array-based expression profiling, are poised to provide additional insights into this group of disorders, in which heterogeneity, both genetic and phenotypic, is emerging as a dominant theme. Gene association studies Autistic disorder is the most severe end of a group of into the ASDs. This work, in concert with important A set of methods that is used neurodevelopmental disorders referred to as autism technical advances, made it possible to carry out the to determine the correlation spectrum disorders (ASDs), all of which share the com- first candidate gene association studies and resequenc- (positive or negative) between mon feature of dysfunctional reciprocal social interac- ing efforts in the late 1990s. Whole-genome linkage a defined genetic variant and a studies phenotype of interest. tion. A meta-analysis of ASD prevalence rates suggests followed, and were used to identify additional that approximately 37 in 10,000 individuals are affected1. loci of potential interest. Although -
Mirna Regulons Associated with Synaptic Function
miRNA Regulons Associated with Synaptic Function Maria Paschou1, Maria D. Paraskevopoulou2, Ioannis S. Vlachos2, Pelagia Koukouraki1, Artemis G. Hatzigeorgiou2,3, Epaminondas Doxakis1* 1 Basic Neurosciences Division, Biomedical Research Foundation of the Academy of Athens, Athens, Greece, 2 Institute of Molecular Oncology, Biomedical Sciences Research Center ‘‘Alexander Fleming’’ Vari, Greece, 3 Department of Computer and Communication Engineering, University of Thessaly, Volos, Greece Abstract Differential RNA localization and local protein synthesis regulate synapse function and plasticity in neurons. MicroRNAs are a conserved class of regulatory RNAs that control mRNA stability and translation in tissues. They are abundant in the brain but the extent into which they are involved in synaptic mRNA regulation is poorly known. Herein, a computational analysis of the coding and 39UTR regions of 242 presynaptic and 304 postsynaptic proteins revealed that 91% of them are predicted to be microRNA targets. Analysis of the longest 39UTR isoform of synaptic transcripts showed that presynaptic mRNAs have significantly longer 39UTR than control and postsynaptic mRNAs. In contrast, the shortest 39UTR isoform of postsynaptic mRNAs is significantly shorter than control and presynaptic mRNAs, indicating they avert microRNA regulation under specific conditions. Examination of microRNA binding site density of synaptic 39UTRs revealed that they are twice as dense as the rest of protein-coding transcripts and that approximately 50% of synaptic transcripts are predicted to have more than five different microRNA sites. An interaction map exploring the association of microRNAs and their targets revealed that a small set of ten microRNAs is predicted to regulate 77% and 80% of presynaptic and postsynaptic transcripts, respectively.