Eight-Coordination Inorganic Chemistry, Vol
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Crystal Structures
Crystal Structures Academic Resource Center Crystallinity: Repeating or periodic array over large atomic distances. 3-D pattern in which each atom is bonded to its nearest neighbors Crystal structure: the manner in which atoms, ions, or molecules are spatially arranged. Unit cell: small repeating entity of the atomic structure. The basic building block of the crystal structure. It defines the entire crystal structure with the atom positions within. Lattice: 3D array of points coinciding with atom positions (center of spheres) Metallic Crystal Structures FCC (face centered cubic): Atoms are arranged at the corners and center of each cube face of the cell. FCC continued Close packed Plane: On each face of the cube Atoms are assumed to touch along face diagonals. 4 atoms in one unit cell. a 2R 2 BCC: Body Centered Cubic • Atoms are arranged at the corners of the cube with another atom at the cube center. BCC continued • Close Packed Plane cuts the unit cube in half diagonally • 2 atoms in one unit cell 4R a 3 Hexagonal Close Packed (HCP) • Cell of an HCP lattice is visualized as a top and bottom plane of 7 atoms, forming a regular hexagon around a central atom. In between these planes is a half- hexagon of 3 atoms. • There are two lattice parameters in HCP, a and c, representing the basal and height parameters Volume respectively. 6 atoms per unit cell Coordination number – the number of nearest neighbor atoms or ions surrounding an atom or ion. For FCC and HCP systems, the coordination number is 12. For BCC it’s 8. -
Crystal Structure of a Material Is Way in Which Atoms, Ions, Molecules Are Spatially Arranged in 3-D Space
Crystalline Structures – The Basics •Crystal structure of a material is way in which atoms, ions, molecules are spatially arranged in 3-D space. •Crystal structure = lattice (unit cell geometry) + basis (atom, ion, or molecule positions placed on lattice points within the unit cell). •A lattice is used in context when describing crystalline structures, means a 3-D array of points in space. Every lattice point must have identical surroundings. •Unit cell: smallest repetitive volume •Each crystal structure is built by stacking which contains the complete lattice unit cells and placing objects (motifs, pattern of a crystal. A unit cell is chosen basis) on the lattice points: to represent the highest level of geometric symmetry of the crystal structure. It’s the basic structural unit or building block of crystal structure. 7 crystal systems in 3-D 14 crystal lattices in 3-D a, b, and c are the lattice constants 1 a, b, g are the interaxial angles Metallic Crystal Structures (the simplest) •Recall, that a) coulombic attraction between delocalized valence electrons and positively charged cores is isotropic (non-directional), b) typically, only one element is present, so all atomic radii are the same, c) nearest neighbor distances tend to be small, and d) electron cloud shields cores from each other. •For these reasons, metallic bonding leads to close packed, dense crystal structures that maximize space filling and coordination number (number of nearest neighbors). •Most elemental metals crystallize in the FCC (face-centered cubic), BCC (body-centered cubic, or HCP (hexagonal close packed) structures: Room temperature crystal structure Crystal structure just before it melts 2 Recall: Simple Cubic (SC) Structure • Rare due to low packing density (only a-Po has this structure) • Close-packed directions are cube edges. -
Tetrahedral Coordination with Lone Pairs
TETRAHEDRAL COORDINATION WITH LONE PAIRS In the examples we have discussed so far, the shape of the molecule is defined by the coordination geometry; thus the carbon in methane is tetrahedrally coordinated, and there is a hydrogen at each corner of the tetrahedron, so the molecular shape is also tetrahedral. It is common practice to represent bonding patterns by "generic" formulas such as AX4, AX2E2, etc., in which "X" stands for bonding pairs and "E" denotes lone pairs. (This convention is known as the "AXE method") The bonding geometry will not be tetrahedral when the valence shell of the central atom contains nonbonding electrons, however. The reason is that the nonbonding electrons are also in orbitals that occupy space and repel the other orbitals. This means that in figuring the coordination number around the central atom, we must count both the bonded atoms and the nonbonding pairs. The water molecule: AX2E2 In the water molecule, the central atom is O, and the Lewis electron dot formula predicts that there will be two pairs of nonbonding electrons. The oxygen atom will therefore be tetrahedrally coordinated, meaning that it sits at the center of the tetrahedron as shown below. Two of the coordination positions are occupied by the shared electron-pairs that constitute the O–H bonds, and the other two by the non-bonding pairs. Thus although the oxygen atom is tetrahedrally coordinated, the bonding geometry (shape) of the H2O molecule is described as bent. There is an important difference between bonding and non-bonding electron orbitals. Because a nonbonding orbital has no atomic nucleus at its far end to draw the electron cloud toward it, the charge in such an orbital will be concentrated closer to the central atom. -
The Volumes of a Compact Hyperbolic Antiprism
The volumes of a compact hyperbolic antiprism Vuong Huu Bao joint work with Nikolay Abrosimov Novosibirsk State University G2R2 August 6-18, Novosibirsk, 2018 Vuong Huu Bao (NSU) The volumes of a compact hyperbolic antiprism Aug. 6-18,2018 1/14 Introduction Calculating volumes of polyhedra is a classical problem, that has been well known since Euclid and remains relevant nowadays. This is partly due to the fact that the volume of a fundamental polyhedron is one of the main geometrical invariants for a 3-dimensional manifold. Every 3-manifold can be presented by a fundamental polyhedron. That means we can pair-wise identify the faces of some polyhedron to obtain a 3-manifold. Thus the volume of 3-manifold is the volume of prescribed fundamental polyhedron. Theorem (Thurston, Jørgensen) The volumes of hyperbolic 3-dimensional hyperbolic manifolds form a closed non-discrete set on the real line. This set is well ordered. There are only finitely many manifolds with a given volume. Vuong Huu Bao (NSU) The volumes of a compact hyperbolic antiprism Aug. 6-18,2018 2/14 Introduction 1835, Lobachevsky and 1982, Milnor computed the volume of an ideal hyperbolic tetrahedron in terms of Lobachevsky function. 1993, Vinberg computed the volume of hyperbolic tetrahedron with at least one vertex at infinity. 1907, Gaetano Sforza; 1999, Yano, Cho ; 2005 Murakami; 2005 Derevnin, Mednykh gave different formulae for general hyperbolic tetrahedron. 2009, N. Abrosimov, M. Godoy and A. Mednykh found the volumes of spherical octahedron with mmm or 2 m-symmetry. | 2013, N. Abrosimov and G. Baigonakova, found the volume of hyperbolic octahedron with mmm-symmetry. -
Oxide Crystal Structures: the Basics
Oxide crystal structures: The basics Ram Seshadri Materials Department and Department of Chemistry & Biochemistry Materials Research Laboratory, University of California, Santa Barbara CA 93106 USA [email protected] Originally created for the: ICMR mini-School at UCSB: Computational tools for functional oxide materials – An introduction for experimentalists This lecture 1. Brief description of oxide crystal structures (simple and complex) a. Ionic radii and Pauling’s rules b. Electrostatic valence c. Bond valence, and bond valence sums Why do certain combinations of atoms take on specific structures? My bookshelf H. D. Megaw O. Muller & R. Roy I. D. Brown B. G. Hyde & S. Andersson Software: ICSD + VESTA K. Momma and F. Izumi, VESTA 3 for three-dimensional visualization of crystal, volumetric and morphology data, J. Appl. Cryst. 44 (2011) 1272–1276. [doi:10.1107/S0021889811038970] Crystal structures of simple oxides [containing a single cation site] Crystal structures of simple oxides [containing a single cation site] N.B.: CoO is simple, Co3O4 is not. ZnCo2O4 is certainly not ! Co3O4 and ZnCo2O4 are complex oxides. Graphs of connectivity in crystals: Atoms are nodes and edges (the lines that connect nodes) indicate short (near-neighbor) distances. CO2: The molecular structure is O=C=O. The graph is: Each C connected to 2 O, each O connected to a 1 C OsO4: The structure comprises isolated tetrahedra (molecular). The graph is below: Each Os connected to 4 O and each O to 1 Os Crystal structures of simple oxides of monovalent ions: A2O Cu2O Linear coordination is unusual. Found usually in Cu+ and Ag+. -
Inorganic Chemistry
Inorganic Chemistry Chemistry 120 Fall 2005 Prof. Seth Cohen Some Important Features of Metal Ions Electronic configuration • Oxidation State/Charge. •Size. • Coordination number. • Coordination geometry. • “Soft vs. Hard”. • Lability. • Electrochemistry. • Ligand environment. 1 Oxidation State/Charge • The oxidation state describes the charge on the metal center and number of valence electrons • Group - Oxidation Number = d electron count 3 4 5 6 7 8 9 10 11 12 Size • Size of the metal ions follows periodic trends. • Higher positive charge generally means a smaller ion. • Higher on the periodic table means a smaller ion. • Ions of the same charge decrease in radius going across a row, e.g. Ca2+>Mn2+>Zn2+. • Of course, ion size will effect coordination number. 2 Coordination Number • Coordination Number = the number of donor atoms bound to the metal center. • The coordination number may or may not be equal to the number of ligands bound to the metal. • Different metal ions, depending on oxidation state prefer different coordination numbers. • Ligand size and electronic structure can also effect coordination number. Common Coordination Numbers • Low coordination numbers (n =2,3) are fairly rare, in biological systems a few examples are Cu(I) metallochaperones and Hg(II) metalloregulatory proteins. • Four-coordinate is fairly common in complexes of Cu(I/II), Zn(II), Co(II), as well as in biologically less relevant metal ions such as Pd(II) and Pt(II). • Five-coordinate is also fairly common, particularly for Fe(II). • Six-coordinate is the most common and important coordination number for most transition metal ions. • Higher coordination numbers are found in some 2nd and 3rd row transition metals, larger alkali metals, and lanthanides and actinides. -
Systematics of Atomic Orbital Hybridization of Coordination Polyhedra: Role of F Orbitals
molecules Article Systematics of Atomic Orbital Hybridization of Coordination Polyhedra: Role of f Orbitals R. Bruce King Department of Chemistry, University of Georgia, Athens, GA 30602, USA; [email protected] Academic Editor: Vito Lippolis Received: 4 June 2020; Accepted: 29 June 2020; Published: 8 July 2020 Abstract: The combination of atomic orbitals to form hybrid orbitals of special symmetries can be related to the individual orbital polynomials. Using this approach, 8-orbital cubic hybridization can be shown to be sp3d3f requiring an f orbital, and 12-orbital hexagonal prismatic hybridization can be shown to be sp3d5f2g requiring a g orbital. The twists to convert a cube to a square antiprism and a hexagonal prism to a hexagonal antiprism eliminate the need for the highest nodality orbitals in the resulting hybrids. A trigonal twist of an Oh octahedron into a D3h trigonal prism can involve a gradual change of the pair of d orbitals in the corresponding sp3d2 hybrids. A similar trigonal twist of an Oh cuboctahedron into a D3h anticuboctahedron can likewise involve a gradual change in the three f orbitals in the corresponding sp3d5f3 hybrids. Keywords: coordination polyhedra; hybridization; atomic orbitals; f-block elements 1. Introduction In a series of papers in the 1990s, the author focused on the most favorable coordination polyhedra for sp3dn hybrids, such as those found in transition metal complexes. Such studies included an investigation of distortions from ideal symmetries in relatively symmetrical systems with molecular orbital degeneracies [1] In the ensuing quarter century, interest in actinide chemistry has generated an increasing interest in the involvement of f orbitals in coordination chemistry [2–7]. -
Fifty Years of the VSEPR Model R.J
Available online at www.sciencedirect.com Coordination Chemistry Reviews 252 (2008) 1315–1327 Review Fifty years of the VSEPR model R.J. Gillespie Department of Chemistry, McMaster University, Hamilton, Ont. L8S 4M1, Canada Received 26 April 2007; accepted 21 July 2007 Available online 27 July 2007 Contents 1. Introduction ........................................................................................................... 1315 2. The VSEPR model ..................................................................................................... 1316 3. Force constants and the VSEPR model ................................................................................... 1318 4. Linnett’s double quartet model .......................................................................................... 1318 5. Exceptions to the VSEPR model, ligand–ligand repulsion and the ligand close packing (LCP) model ........................... 1318 6. Analysis of the electron density.......................................................................................... 1321 7. Molecules of the transition metals ....................................................................................... 1325 8. Teaching the VSEPR model ............................................................................................. 1326 9. Summary and conclusions .............................................................................................. 1326 Acknowledgements ................................................................................................... -
Enhancing Strategic Discourse Systematically Using Climate Metaphors Widespread Comprehension of System Dynamics in Weather Patterns As a Resource -- /
Alternative view of segmented documents via Kairos 24 August 2015 | Draft Enhancing Strategic Discourse Systematically using Climate Metaphors Widespread comprehension of system dynamics in weather patterns as a resource -- / -- Introduction Systematic global insight of memorable quality? Towards memorable framing of global climate of governance processes? Visual representations of globality of requisite variety for global governance Four-dimensional requisite for a time-bound global civilization? Comprehending the shapes of time through four-dimensional uniform polychora Five-fold ordering of strategic engagement with time Interplay of cognitive patterns in discourse on systemic change Five-fold cognitive dynamics of relevance to governance? Decision-making capacity versus Distinction-making capacity: embodying whether as weather From star-dom to whizdom to isdom? From space-ship design to time-ship embodiment as a requisite metaphor of governance References Prepared in anticipation of the United Nations Climate Change Conference (Paris, 2015) Introduction There is considerable familiarity with the dynamics of climate and weather through the seasons and in different locations. These provide a rich source of metaphor, widely shared, and frequently exploited as a means of communicating subtle insights into social phenomena, strategic options and any resistance to them. It is however now difficult to claim any coherence to the strategic discourse on which humanity and global governance is held to be dependent. This is evident in the deprecation of one political faction by another, the exacerbation of conflictual perceptions by the media, the daily emergence of intractable crises, and the contradictory assertions of those claiming expertise in one arena or another. The dynamics have been caricatured as blame-gaming, as separately discussed (Blame game? It's them not us ! 2015). -
A Tourist Guide to the RCSR
A tourist guide to the RCSR Some of the sights, curiosities, and little-visited by-ways Michael O'Keeffe, Arizona State University RCSR is a Reticular Chemistry Structure Resource available at http://rcsr.net. It is open every day of the year, 24 hours a day, and admission is free. It consists of data for polyhedra and 2-periodic and 3-periodic structures (nets). Visitors unfamiliar with the resource are urged to read the "about" link first. This guide assumes you have. The guide is designed to draw attention to some of the attractions therein. If they sound particularly attractive please visit them. It can be a nice way to spend a rainy Sunday afternoon. OKH refers to M. O'Keeffe & B. G. Hyde. Crystal Structures I: Patterns and Symmetry. Mineral. Soc. Am. 1966. This is out of print but due as a Dover reprint 2019. POLYHEDRA Read the "about" for hints on how to use the polyhedron data to make accurate drawings of polyhedra using crystal drawing programs such as CrystalMaker (see "links" for that program). Note that they are Cartesian coordinates for (roughly) equal edge. To make the drawing with unit edge set the unit cell edges to all 10 and divide the coordinates given by 10. There seems to be no generally-agreed best embedding for complex polyhedra. It is generally not possible to have equal edge, vertices on a sphere and planar faces. Keywords used in the search include: Simple. Each vertex is trivalent (three edges meet at each vertex) Simplicial. Each face is a triangle. -
Ten-Coordinate Lanthanide [Ln(HL)(L)] Complexes (Ln = Dy, Ho, Er, Tb) with Pentadentate N3O2-Type Schiff-Base Ligands: Synthesis, Structure and Magnetism
magnetochemistry Article Ten-Coordinate Lanthanide [Ln(HL)(L)] Complexes (Ln = Dy, Ho, Er, Tb) with Pentadentate N3O2-Type Schiff-Base Ligands: Synthesis, Structure and Magnetism Tamara A. Bazhenova 1, Ilya A. Yakushev 1,2,3 , Konstantin A. Lyssenko 4 , Olga V. Maximova 1,5,6, Vladimir S. Mironov 1,7,* , Yuriy V. Manakin 1 , Alexey B. Kornev 1, Alexander N. Vasiliev 5,8 and Eduard B. Yagubskii 1,* 1 Institute of Problems of Chemical Physics, 142432 Chernogolovka, Russia; [email protected] (T.A.B.); [email protected] (I.A.Y.); [email protected] (O.V.M.); [email protected] (Y.V.M.); [email protected] (A.B.K.) 2 Kurnakov Institute of General and Inorganic Chemistry, 119991 Moscow, Russia 3 National Research Center “Kurchatov Institute”, 123182 Moscow, Russia 4 Department of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia; [email protected] 5 Faculty of Physics, Lomonosov Moscow State University, 119991 Moscow, Russia; [email protected] 6 National University “MISiS”, 119049 Moscow, Russia 7 Shubnikov Institute of Crystallography of Federal Scientific Research Centre “Crystallography and Photonics” RAS, 119333 Moscow, Russia 8 National Research South Ural State University, 454080 Chelyabinsk, Russia * Correspondence: [email protected] (V.S.M.); [email protected] (E.B.Y.) Received: 26 October 2020; Accepted: 9 November 2020; Published: 13 November 2020 Abstract: A series of five neutral mononuclear lanthanide complexes [Ln(HL)(L)] (Ln = Dy3+, 3+ 3+ 3+ H Ho Er and Tb ) with rigid pentadentate N3O2-type Schiff base ligands, H2L (1-Dy, OCH3 3-Ho, 4-Er and 6-Tb complexes) or H2L ,(2-Dy complex) has been synthesized by reaction H of two equivalents of 1,10-(pyridine-2,6-diyl)bis(ethan-1-yl-1-ylidene))dibenzohydrazine (H2L , [H2DAPBH]) or 1,10-(pyridine-2,6-diyl)bis(ethan-1-yl-1-ylidene))di-4-methoxybenzohydrazine OCH3 (H2L , [H2DAPMBH]) with common lanthanide salts. -
Uniform Panoploid Tetracombs
Uniform Panoploid Tetracombs George Olshevsky TETRACOMB is a four-dimensional tessellation. In any tessellation, the honeycells, which are the n-dimensional polytopes that tessellate the space, Amust by definition adjoin precisely along their facets, that is, their ( n!1)- dimensional elements, so that each facet belongs to exactly two honeycells. In the case of tetracombs, the honeycells are four-dimensional polytopes, or polychora, and their facets are polyhedra. For a tessellation to be uniform, the honeycells must all be uniform polytopes, and the vertices must be transitive on the symmetry group of the tessellation. Loosely speaking, therefore, the vertices must be “surrounded all alike” by the honeycells that meet there. If a tessellation is such that every point of its space not on a boundary between honeycells lies in the interior of exactly one honeycell, then it is panoploid. If one or more points of the space not on a boundary between honeycells lie inside more than one honeycell, the tessellation is polyploid. Tessellations may also be constructed that have “holes,” that is, regions that lie inside none of the honeycells; such tessellations are called holeycombs. It is possible for a polyploid tessellation to also be a holeycomb, but not for a panoploid tessellation, which must fill the entire space exactly once. Polyploid tessellations are also called starcombs or star-tessellations. Holeycombs usually arise when (n!1)-dimensional tessellations are themselves permitted to be honeycells; these take up the otherwise free facets that bound the “holes,” so that all the facets continue to belong to two honeycells. In this essay, as per its title, we are concerned with just the uniform panoploid tetracombs.