Annex 1: Field Protocol
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Cobitis Elongata, Heckel & Kner, 1858
Molekularna ekologija velikog vijuna (Cobitis elongata, Heckel & Kner, 1858) Nemec, Petra Master's thesis / Diplomski rad 2019 Degree Grantor / Ustanova koja je dodijelila akademski / stručni stupanj: University of Zagreb, Faculty of Science / Sveučilište u Zagrebu, Prirodoslovno-matematički fakultet Permanent link / Trajna poveznica: https://urn.nsk.hr/urn:nbn:hr:217:053268 Rights / Prava: In copyright Download date / Datum preuzimanja: 2021-10-02 Repository / Repozitorij: Repository of Faculty of Science - University of Zagreb Sveuĉilište u Zagrebu Prirodoslovno-matematiĉki fakultet Biološki odsjek Petra Nemec MOLEKULARNA EKOLOGIJA VELIKOG VIJUNA (Cobitis elongata Heckel & Kner, 1858) Diplomski rad Zagreb, 2019. Ovaj rad, izraĊen u Zoologijskom zavodu Biološkog odsjeka Prirodoslovno-matematiĉkog fakulteta Sveuĉilišta u Zagrebu, pod vodstvom doc. dr. sc. Ivane Buj, predan je na ocjenu Biološkom odsjeku Prirodoslovno-matematiĉkog fakulteta Sveuĉilišta u Zagrebu radi stjecanja zvanja magistra ekologije i zaštite prirode. Zahvala Zahvaljujem svojoj mentorici doc. dr. sc. Ivani Buj na stručnom vodstvu i prenesenom znanju, usmjeravanju i pomoći, strpljenju te vremenu koje mi je poklonila tijekom izrade ovog diplomskog rada. Hvala što ste vjerovali da ja to mogu! Hvala mojoj obitelji bez koje ovo sve ne bi bilo moguće. Hvala vam svima na velikoj potpori i brizi što ste me bodrili i bili uz mene tijekom mojih uspona, ali i padova. Najveća hvala mami i tati na bezuvjetnoj ljubavi, podršci, a najviše na svim odricanjima i nesebičnom trudu koji su uložili u moje obrazovanje. Zahvaljujem svim svojim prijateljima i kolegama s kojima sam provela najbolje studentske dane. Hvala vam na svakom zajedničkom trenutku, zabavnim druženjima, razgovorima te učenju do dugo u noć. Hvala što ste mi život u drugom gradu učinili ljepšim. -
Rudd (Scardinius Erythrophthalmus) Introduced to the Iberian Peninsula: Feeding Ecology in Lake Banyoles
Hydrobiologia 436: 159–164, 2000. 159 © 2000 Kluwer Academic Publishers. Printed in the Netherlands. Rudd (Scardinius erythrophthalmus) introduced to the Iberian peninsula: feeding ecology in Lake Banyoles Emili Garc´ıa-Berthou & Ramon Moreno-Amich Departament de Ci`encies Ambientals & Institut d’Ecologia Aqu`atica, Universitat de Girona, E-17071 Girona, Catalonia, Spain Phone: +34 972 418 467. Fax: +34 972 418 150. E-mail: [email protected] Received in revised form 10 March 2000; accepted 20 June 2000 Key words: cyprinid fish, rudd, Scardinius erythrophthalmus, food, diet Abstract The first data on the ecology of rudd (Scardinius erythrophthalmus) introduced to the Iberian peninsula are presen- ted. The habitat and diet variation of rudd were studied in Lake Banyoles (Spain), an oligotrophic karstic lake dominated by exotic fish species. Rudd were strictly littoral and the diet was based on detritus and plant material. The most important animal prey were the cladocerans Daphnia longispina and Scapholeberis rammneri, amphi- pods and several late stages of nematoceran dipterans. Rudd were more zooplanktivorous in spring and autumn and less in summer. There was also a size-dependent diet shift, from microcrustaceans to macroinvertebrates. The diet of rudd was also distinguished by the importance of plant material and various small neustonic invertebrates, particularly S. rammneri and late stages of nematocerans, showing a strong resource partitioning with other fish species. The degree of herbivory in Lake Banyoles was lower than usual. Introduction or early 20th and since the 1980s are expanding their distribution (Burkhead & Williams, 1991), though Rudd (Scardinius erythrophthalmus) are medium- their interactions with native species remain unknown sized cyprinid fish native to freshwaters of Europe and (Easton et al., 1993). -
Guidance Document on the Strict Protection of Animal Species of Community Interest Under the Habitats Directive 92/43/EEC
Guidance document on the strict protection of animal species of Community interest under the Habitats Directive 92/43/EEC Final version, February 2007 1 TABLE OF CONTENTS FOREWORD 4 I. CONTEXT 6 I.1 Species conservation within a wider legal and political context 6 I.1.1 Political context 6 I.1.2 Legal context 7 I.2 Species conservation within the overall scheme of Directive 92/43/EEC 8 I.2.1 Primary aim of the Directive: the role of Article 2 8 I.2.2 Favourable conservation status 9 I.2.3 Species conservation instruments 11 I.2.3.a) The Annexes 13 I.2.3.b) The protection of animal species listed under both Annexes II and IV in Natura 2000 sites 15 I.2.4 Basic principles of species conservation 17 I.2.4.a) Good knowledge and surveillance of conservation status 17 I.2.4.b) Appropriate and effective character of measures taken 19 II. ARTICLE 12 23 II.1 General legal considerations 23 II.2 Requisite measures for a system of strict protection 26 II.2.1 Measures to establish and effectively implement a system of strict protection 26 II.2.2 Measures to ensure favourable conservation status 27 II.2.3 Measures regarding the situations described in Article 12 28 II.2.4 Provisions of Article 12(1)(a)-(d) in relation to ongoing activities 30 II.3 The specific protection provisions under Article 12 35 II.3.1 Deliberate capture or killing of specimens of Annex IV(a) species 35 II.3.2 Deliberate disturbance of Annex IV(a) species, particularly during periods of breeding, rearing, hibernation and migration 37 II.3.2.a) Disturbance 37 II.3.2.b) Periods -
Cenozoic Tectonic and Climatic Events in Southern Iberian Peninsula: Implications
Research paper Cenozoic tectonic and climatic events in southern Iberian Peninsula: implications for the evolutionary history of freshwater fish of the genus Squalius (Actinopterygii, Cyprinidae) Silvia Perea 1*, Marta Cobo-Simon2 and Ignacio Doadrio1 1 Biodiversity and Evolutionary Group. Museo Nacional de Ciencias Naturales, CSIC, C/ José Gutiérrez Abascal, 2. 28006, Madrid, Spain 2 National Center of Biotechnology, Systems Biology Department, C/ Darwin 3. 28049, Madrid, Spain. *Corresponding author: Silvia Perea; Tel.: +34 91 4111328; fax: +34 91 5645078. Museo Nacional de Ciencias Naturales, CSIC, Biodiversity and Evolutionary Group, C/ José Gutiérrez Abascal, 2. 28006, Madrid, Spain E-mail addresses: SP: [email protected] (Corresponding author) ID: [email protected] MCS: [email protected] 1 ABSTRACT Southern Iberian freshwater ecosystems located at the border between the European and African plates represent a tectonically complex region spanning several geological ages, from the uplifting of the Betic Mountains in the Serravalian-Tortonian periods to the present. This area has also been subjected to the influence of changing climate conditions since the Middle-Upper Pliocene when seasonal weather patterns were established. Consequently, the ichthyofauna of southern Iberia is an interesting model system for analyzing the influence of Cenozoic tectonic and climatic events on its evolutionary history. The cyprinids Squalius malacitanus and Squalius pyrenaicus are allopatrically distributed in southern Iberia and their evolutionary history may have been defined by Cenozoic tectonic and climatic events. We analyzed MT-CYB (510 specimens) and RAG1 (140 specimens) genes of both species to reconstruct phylogenetic relationships and to estimate divergence times and ancestral distribution ranges of the species and their populations. -
Publis14-Mistea-007 {5E1DA239
Bayesian hierarchical model used to analyze regression between fish body size and scale size: application torare fish species Zingel asper Bénédicte Fontez Nguyen The, Laurent Cavalli To cite this version: Bénédicte Fontez Nguyen The, Laurent Cavalli. Bayesian hierarchical model used to analyze regression between fish body size and scale size: application to rare fish species Zingel asper. Knowledge and Management of Aquatic Ecosystems, EDP sciences/ONEMA, 2014, pp.10P1-10P8. 10.1051/kmae/2014008. hal-01499072 HAL Id: hal-01499072 https://hal.archives-ouvertes.fr/hal-01499072 Submitted on 30 Mar 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Knowledge and Management of Aquatic Ecosystems (2014) 413, 10 http://www.kmae-journal.org c ONEMA, 2014 DOI: 10.1051/kmae/2014008 Bayesian hierarchical model used to analyze regression between fish body size and scale size: application to rare fish species Zingel asper B. Fontez(1),(2), L. Cavalli(3), Received May 24, 2013 Revised February 20, 2014 Accepted February 21, 2014 ABSTRACT Key-words: Back-calculation allows to increase available data on fish growth. The ac- hierarchical curacy of back-calculation models is of paramount importance for growth Bayes model, analysis. -
Phylogenetic Position of the Fish Genus Ellopostoma (Teleostei: Cypriniformes) Using Molecular Genetic Data
157 Ichthyol. Explor. Freshwaters, Vol. 20, No. 2, pp. 157-162, 2 figs., June 2009 © 2009 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 Phylogenetic position of the fish genus Ellopostoma (Teleostei: Cypriniformes) using molecular genetic data Jörg Bohlen* and Vendula Šlechtová* We investigated the phylogenetic position of Ellopostoma based on nuclear sequence data (RAG-1 gene). Ellopo- stoma is a member of the superfamily Cobitoidea (loaches) of Cypriniformes, but does not belong to any of the currently recognised families. It represents an independent lineage, recognised as a distinct new family Ellopo- stomatidae, characterized by a squarish and oblique snout, a minute protrusible mouth, a single pair of barbels, large eyes and 35-38 pharyngeal teeth. Introduction middle stretches of the Kapuas River in western Borneo. It is only in 1976 that the species was With about 3800 recognised species, the freshwa- collected again, also in the Kapuas (Roberts, 1989). ter fish order Cypriniformes (Osteichthyes: Tele- Kottelat (1989) recorded the presence of an un- ostei) is one of the largest recognised to date named Ellopostoma from the Malay Peninsula among vertebrates. It is divided into two main [Tapi River, Thailand], later described by Tan & lineages, the superfamilies Cyprinoidea (carps, Lim (2002) as E. mystax. Kottelat & Widjanarti minnows and related fishes) and Cobitoidea (2005) provide additional records of E. megalo- (loaches and related fishes) (Nelson, 2006). With- mycter, also in the Kapuas drainage. in Cobitoidea seven lineages are recognizable Because of its unique morphological features, (called families by e. g., Šlechtová et al., 2007; Chen the phylogenetic position of Ellopostoma has been & Mayden, 2009). -
Iberian Cyprinids: Habitat Requirements and Vulnerabilities
Session 1 Cyprinid species: ecology and constraints Iberian cyprinids: habitat requirements and vulnerabilities 2nd Stakeholder Workshop – Iberia – Lisboa, Portugal 20.03.2019 Francisco Godinho Hidroerg 20/03/2018 Francisco Godinho 1 Setting the scene 22/03/2018 Francisco Godinho 2 Relatively small river catchmentsIberian fluvial systems Douro/Duero is the largest one, with 97 600 km2 Loire – 117 000 km2, Rhinne -185 000 km2, Vistula – 194 000 km2, Danube22/03/2018 – 817 000 km2, Volga –Francisco 1 380 Godinho 000 km2 3 Most Iberian rivers present a mediterranean hydrological regime (temporary rivers are common) Vascão river, a tributary of the Guadiana river 22/03/2018 Francisco Godinho 4 Cyprinidae are the characteristic fish taxa of Iberian fluvial ecosystems, occurring from mountain streams (up to 1000 m in altitude) to lowland rivers Natural lakes are rare in the Iberian Peninsula and most natural freshwater bodies are rivers and streams 22/03/2018 Francisco Godinho 5 Six fish-based river types have been distinguished in Portugal (INAG and AFN, 2012) Type 1 - Northern salmonid streams Type 2 - Northern salmonid–cyprinid trans. streams Type 3 - Northern-interior medium-sized cyprinid streams Type 4 - Northern-interior medium-sized cyprinid streams Type 5 - Southern medium-sized cyprinid streams Type 6 - Northern-coastal cyprinid streams With the exception of assemblages in small northern, high altitude streams, native cyprinids dominate most unaltered fish assemblages, showing a high sucess in the hidrological singular 22/03/2018 -
CBD First National Report
FIRST NATIONAL REPORT OF THE REPUBLIC OF SERBIA TO THE UNITED NATIONS CONVENTION ON BIOLOGICAL DIVERSITY July 2010 ACRONYMS AND ABBREVIATIONS .................................................................................... 3 1. EXECUTIVE SUMMARY ........................................................................................... 4 2. INTRODUCTION ....................................................................................................... 5 2.1 Geographic Profile .......................................................................................... 5 2.2 Climate Profile ...................................................................................................... 5 2.3 Population Profile ................................................................................................. 7 2.4 Economic Profile .................................................................................................. 7 3 THE BIODIVERSITY OF SERBIA .............................................................................. 8 3.1 Overview......................................................................................................... 8 3.2 Ecosystem and Habitat Diversity .................................................................... 8 3.3 Species Diversity ............................................................................................ 9 3.4 Genetic Diversity ............................................................................................. 9 3.5 Protected Areas .............................................................................................10 -
Identification and Modelling of a Representative Vulnerable Fish Species for Pesticide Risk Assessment in Europe
Identification and Modelling of a Representative Vulnerable Fish Species for Pesticide Risk Assessment in Europe Von der Fakultät für Mathematik, Informatik und Naturwissenschaften der RWTH Aachen University zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigte Dissertation vorgelegt von Lara Ibrahim, M.Sc. aus Mazeraat Assaf, Libanon Berichter: Universitätsprofessor Dr. Andreas Schäffer Prof. Dr. Christoph Schäfers Tag der mündlichen Prüfung: 30. Juli 2015 Diese Dissertation ist auf den Internetseiten der Universitätsbibliothek online verfügbar Erklärung Ich versichere, dass ich diese Doktorarbeit selbständig und nur unter Verwendung der angegebenen Hilfsmittel angefertigt habe. Weiterhin versichere ich, die aus benutzten Quellen wörtlich oder inhaltlich entnommenen Stellen als solche kenntlich gemacht zu haben. Lara Ibrahim Aachen, am 18 März 2015 Zusammenfassung Die Zulassung von Pflanzenschutzmitteln in der Europäischen Gemeinschaft verlangt unter anderem eine Abschätzung des Risikos für Organismen in der Umwelt, die nicht Ziel der Anwendung sind. Unvertretbare Auswirkungen auf den Naturhalt sollen vermieden werden. Die ökologische Risikoanalyse stellt die dafür benötigten Informationen durch eine Abschätzung der Exposition der Organismen und der sich daraus ergebenden Effekte bereit. Die Effektabschätzung beruht dabei hauptsächlich auf standardisierten ökotoxikologischen Tests im Labor mit wenigen, oft nicht einheimischen Stellvertreterarten. In diesen Tests werden z. B. Effekte auf das Überleben, das Wachstum und/oder die Reproduktion von Fischen bei verschiedenen Konzentrationen der Testsubstanz gemessen und Endpunkte wie die LC50 (Lethal Concentrations for 50%) oder eine NOEC (No Observed Effect Concentration, z. B. für Wachstum oder Reproduktionsparameter) abgeleitet. Für Fische und Wirbeltiere im Allgemeinen beziehen sich die spezifischen Schutzziele auf das Überleben von Individuen und die Abundanz und Biomasse von Populationen. -
Three New Species of Alburnoides (Teleostei: Cyprinidae) from Euphrates River, Eastern Anatolia, Turkey
Zootaxa 3754 (2): 101–116 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3754.2.1 http://zoobank.org/urn:lsid:zoobank.org:pub:33DCB673-BC7C-4DB2-84CE-5AC5C6AD2052 Three new species of Alburnoides (Teleostei: Cyprinidae) from Euphrates River, Eastern Anatolia, Turkey DAVUT TURAN1,3, CÜNEYT KAYA1, F. GÜLER EKMEKÇİ2 & ESRA DOĞAN1 1Recep Tayyip Erdoğan University, Faculty of Fisheries and Aquatic Sciences, 53100 Rize, Turkey. E-mail: [email protected]; [email protected]; [email protected] 2Department of Biology, Faculty of Sciences, Hacettepe University, Beytepe Campus, 06800 Ankara, Turkey. E-mail: [email protected] 3Corresponding author. E-mail: [email protected] Abstract Three new species of Alburnoides, Alburnoides emineae sp. n., Alburnoides velioglui sp. n., Alburnoides recepi sp. n., are described from the Euphrates River drainages (Persian Gulf basin) in eastern Anatolia, Turkey. Alburnoides emineae, from Beyazsu Stream (south-eastern Euphrates River drainage), is distinguished from all species of Alburnoides in Turkey and adjacent regions by a combination of the following characters (none unique to the species): a well developed ventral keel between pelvic and anal fins, commonly scaleless or very rarely 1–2 scales covering the anterior portion of the keel; a deep body (depth at dorsal-fin origin 31–36% SL); 37–43 + 1–2 lateral-line scales, 13½–15½ branched anal-fin rays; number of total vertebrae 41–42, modally 41, comprising 20–21 abdominal and 20–21 caudal vertebrae. Alburnoides velioglui, from Sırlı, Karasu, Divriği and Sultansuyu streams (northern and northeastern Euphrates River drainages), is distinguished by a poorly developed ventral keel, completely scaled; a moderately deep body (depth at dorsal-fin origin 24–29% SL); 45–53 + 1–2 lateral-line scales, 11½ –13½ branched anal-fin rays; number of total vertebrae 41–42, modally 42, comprising 20–22 abdominal and 20–21 caudal vertebrae. -
Reconstruction of Oligocene and Neogene Freshwater Fish Faunas—An Actualistic Study on Cypriniform Otoliths
Reconstruction of Oligocene and Neogene freshwater fish faunas—an actualistic study on cypriniform otoliths TANJA SCHULZ−MIRBACH and BETTINA REICHENBACHER Schulz−Mirbach, T. and Reichenbacher, B. 2006. Reconstruction of Oligocene and Neogene freshwater fish faunas—an actualistic study on cypriniform otoliths. Acta Palaeontologica Polonica 51 (2): 283–304. Fossil utricular otoliths (= lapilli) from cypriniform fishes have long been recorded from European Oligocene and Neo− gene freshwater and oligohaline sediments. Until now, their determination was limited to the family level owing to the lack of morphological investigations on lapilli of Recent cypriniforms. The present study introduces a terminology for the lapillus morphology that is based on the lapilli of 134 specimens of 20 cyprinid and one balitorid species. It is demon− strated that the lapillus has valuable characters for taxonomic classification. As a result, fossil lapilli from Oligocene and Miocene continental deposits from the western Mediterranean, the Swiss and the South German Molasse Basin, the Mainz Basin, and additionally from Anatolia could be determined. Nine species were identified: aff. Abramis sp. vel aff. Alburnus sp., aff. Alburnoides sp., aff. Barbus sp., cf. Leuciscus sp., Palaeoleuciscus sp., Palaeotinca moeddeni sp. nov., Palaeotinca sp. 1, aff. Phoxinus sp., and aff. Rutilus sp. vel aff. Scardinius sp. Our study includes the oldest record of a Phoxinus−related and a Palaeotinca species from Europe. Additionally, aff. Abramis sp. vel aff. Alburnus sp. and aff. Alburnoides have been identified as fossils for the first time. The determination of the fossil lapilli has been supported by means of pharyngeal teeth, with the exception of aff. Abramis sp. -
Die Eier Heimischer Fische 24. Zingel – Zingel Zingel (Linnaeus, 1758) (Percidae)
©Österr. Fischereiverband u. Bundesamt f. Wasserwirtschaft, download unter www.zobodat.at Museth, J., R. Borgstrom, J. E. Brittain, I. Herberg und C. Naalsund (2002): Introduction of the European minnow into a subalpine lake: habitat use and long-term changes in population dynamics. Journal of Fish Biology 60: 1308– 1321. Muus, B. J. und P. Dahlström (1993): Süßwasserfische Europas – Biologie, Fang, wirtschaftliche Bedeutung. BLV Verlagsgesellschaft, München, 224 S. Nunn, A. D., J. P. Harvey und I. G. Cowx (2007): Variations in the spawning periodicity of eight fish species in three English lowland rivers over a 6 year period, inferred from 0+ year fish length distributions. Journal of Fish Bio- logy 70: 1254–1267. Riehl, R. (1979): Ein erweiterter und verbesserter Bestimmungsschlüssel für die Eier deutscher Süßwasser-Teleosteer. Zeitschrift für angewandte Zoologie 2: 199–216. Riehl, R. (1991): Die Struktur der Oocyten und Eihüllen oviparer Knochenfische – eine Übersicht. Acta Biologica Benrodis 3: 27–65. Riehl, R. (1996): Ein ganz besonderes »Loch« in der Eihülle von Knochenfischen – die Mikropyle. Aquatica 1: 122– 123. Riehl, R. und E. Schulte (1977): Licht- und elektronenmikroskopische Untersuchungen an den Eihüllen der Elritze Phoxinus phoxinus (L.) (Teleostei, Cyprinidae). Protoplasma 92: 147–162. Riehl, R. und R. A. Patzner (1998): Minireview: The modes of attachment in the eggs of teleost fishes. Italian Jour- nal of Zoology 65 (suppl. 1): 415–420. Schadt, J. (1993): Fische, Neunaugen, Krebse und Muscheln in Oberfranken. Bezirk Oberfranken, Bayreuth, 136 S. Schneider, G. und K. M. Levander (1900): Ichthyologische Beiträge. I. Notizen über die an der Südküste Finnlands in den Schären des Kirchspieles Esbo vorkommenden Fische.