AUSTRALIAN PATHOLOGY UNITS AND TERMINOLOGY

(APUTS)

Reporting Terminology and Codes

Microbiology (v1.0)

1

12/02/2013 APUTS Report Information Model - Urine Microbiology Page 1 of 1

Specimen Type Specimen Macro Time

Glucose Bilirubin Ketones Specific Gravity pH Chemistry Protein Urobilinogen Nitrites Haemoglobin Leucocyte Esterases

White blood cell count

Red blood cells Cells Epithelial cells

Bacteria Microscopy Parasites Microorganisms Yeasts

Casts Crystals Other elements

Antibacterial Activity

No growth

Mixed growth

Urine MCS No significant growth Klebsiella sp. Bacteria ESBL Klebsiella pneumoniae Identification Virus Fungi

Growth of >10^8 org/L 10^7 to 10^8 organism/L of mixed Range or number Colony Count growth of 3 organisms 19090-0 Culture Organism 1 630-4 LOINC >10^8 organisms/L LOINC Significant growth

e.g. Ampicillin 18864-9 LOINC

Antibiotics Susceptibility Method

Released/suppressed None Organism 2 Organism 3 Organism 4

None Consistent with UTI Probable contamination Growth unlikely to be significant Comment Please submit a repeat specimen for testing if clinically indicated Catheter comments Sterile pyuria

Notification to infection control and public health departments

PUTS Urine Microbiology Information Model v1.mmap - 12/02/2013 - Mindjet 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Urine Page 1 of 3

RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1 LOINC LOINC LOINC LOINC LOINC LOINC LOINC Urine Microbiology Report Component Property Timing System Scale Method

Specimen Collection Method 19159-3 Urinalysis specimen collection method Prid Pt Urine Nom

Dipstick/Chemistry Glucose 25428-4 Glucose ACnc Pt Urine Ord Test strip Bilirubin 5770-3 Bilirubin ACnc Pt Urine Ord Test strip Ketones 2514-8 Ketones ACnc Pt Urine Ord Test strip Specific Gravity 5811-5 Specific gravity Rden Pt Urine Qn Test strip pH 5803-2 pH LsCnc Pt Urine Qn Test strip Protein 20454-5 Protein ACnc Pt Urine Ord Test strip Urobilinogen 5818-0 Urobilinogen ACnc Pt Urine Ord Test strip Nitrites 5802-4 Nitrite ACnc Pt Urine Ord Test strip Haemoglobin 5794-3 Hemoglobin ACnc Pt Urine Ord Test strip Leucocyte Esterase 5799-2 Leukocyte esterase ACnc Pt Urine Ord Test strip

Microscopy Cells White blood cell count 30405-5 Leukocytes NCnc Pt Urine Qn Red blood cell count 30391-7 Erythrocytes NCnc Pt Urine Qn Red blood cell morphology 53974-2 Erythrocyte morphology Imp Pt Urine sed Nar Microscopy.light Epithelial cells 30383-4 Epithelial cells NCnc Pt Urine Qn Microorganisms Bacteria 50221-1 Bacteria ACnc Pt Urine Ord Automated Parasites 33017-5 Parasites Naric Pt Urine sed Qn Microscopy.light.LPF Yeast 32356-8 Yeast ACnc Pt Urine sed Ord Microscopy.light Fungi 20457-8 Fungi.filamentous ACnc Pt Urine sed Ord Microscopy.light Casts Casts present 24124-0 Casts ACnc Pt Urine sed Ord Microscopy.light Casts number 9842-6 Casts Naric Pt Urine sed Qn Microscopy.light.LPF Casts type 58436-7 Casts Type Pt Urine sed Nom Microscopy.light Crystals Crystals present 49755-2 Crystals ACnc Pt Urine sed Ord Microscopy.light Crystals number 38459-4 Crystals Naric Pt Urine sed Qn Microscopy.light.HPF Crystals type 5782-8 Crystals Prid Pt Urine sed Nom Microscopy.light Other 58442-5 Prid Pt Urine sed Nom Microscopy.light Spermatozoa 8248-7 Spermatozoa ACnc Pt Urine sed Ord Microscopy.light

Antibacterial activity

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RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1 LOINC LOINC LOINC LOINC LOINC LOINC LOINC Urine Microbiology Report Component Property Timing System Scale Method Antibacterial activity 30910-4 Antimicrobials ACnc Pt Urine Ord

Culture The same LOINC should be used if multiple organisms are cultured. The HL7 Sub ID (OBX-4) field can be used to distiguish organisms from each other and group relevant colony counts and susceptiblity testing. Culture result/Organism 630-4 Bacteria identified Prid Pt Urine Nom Culture Colony count 19090-0 Colony count NCnc Pt Urine Qn Antimicrobial Susceptibility The LOINC terms listed below are an extract from a large selection of antimicrobial substances available. All are methodless and have the scale property of OrdQn. The OrdQn scale property allow results to be reported as as resistant, intermediate, susceptible or as the mm diameter of the inhibition zone/ MIC numeric value. In addition to the methodless LOINC terms there are versions with the following methods: Agar diffusion, MIC, MLC (Minimum lethal concentration), SBT (Serum bactericidal titre)and Gradient strip (E-Test or gradient strip) Antibacterials Amikacin 18860-7 Amikacin Susc Pt Isolate OrdQn Amoxycillin 18861-5 Amoxicillin Susc Pt Isolate OrdQn Ampicillin 18864-9 Ampicillin Susc Pt Isolate OrdQn Augmentin 18862-3 Amoxicillin+Clavulanate Susc Pt Isolate OrdQn Azithromycin 18866-4 Azithromycin Susc Pt Isolate OrdQn Aztreonam 18868-0 Aztreonam Susc Pt Isolate OrdQn Cefepime 18879-7 Cefepime Susc Pt Isolate OrdQn Cefotaxime 18886-2 Cefotaxime Susc Pt Isolate OrdQn Cefpirome 18889-6 Cefpirome Susc Pt Isolate OrdQn Ceftazidime 18893-8 Ceftazidime Susc Pt Isolate OrdQn Ceftriaxone 18895-3 Ceftriaxone Susc Pt Isolate OrdQn Cephalexin 18897-9 Cephalexin Susc Pt Isolate OrdQn Cephalothin 18900-1 Cephalothin Susc Pt Isolate OrdQn Cephazolin 18878-9 Cefazolin Susc Pt Isolate OrdQn Chloramphenicol 18903-5 Chloramphenicol Susc Pt Isolate OrdQn Ciprofloxacin 18906-8 Ciprofloxacin Susc Pt Isolate OrdQn Clarithromycin 18907-6 Clarithromycin Susc Pt Isolate OrdQn Daptomycin 35789-7 Daptomycin Susc Pt Isolate OrdQn Doripenem 60535-2 Doripenem Susc Pt Isolate OrdQn Ertapenem 35802-8 Ertapenem Susc Pt Isolate OrdQn Erythromycin 18919-1 Erythromycin Susc Pt Isolate OrdQn Flucloxacillin/ 18923-3 Floxacillin Susc Pt Isolate OrdQn Flucloxacillin/Dicloxacillin 18916-7 Dicloxacillin Susc Pt Isolate OrdQn Fosfomycin 25596-8 Fosfomycin Susc Pt Isolate OrdQn Fusidic acid 18927-4 Fusidate Susc Pt Isolate OrdQn Gentamicin 18928-2 Gentamicin Susc Pt Isolate OrdQn Gentamicin (high level) 18929-0 Gentamicin.high potency Susc Pt Isolate OrdQn Linezolid 29258-1 Linezolid Susc Pt Isolate OrdQn lmipenem 18932-4 Imipenem Susc Pt Isolate OrdQn

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RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1 LOINC LOINC LOINC LOINC LOINC LOINC LOINC Urine Microbiology Report Component Property Timing System Scale Method Meropenem 18943-1 Meropenem Susc Pt Isolate OrdQn Methicillin 18945-6 Methicillin Susc Pt Isolate OrdQn Metronidazole 18946-4 Metronidazole Susc Pt Isolate OrdQn Moxifloxacin 31039-1 Moxifloxacin Susc Pt Isolate OrdQn Mupirocin 20389-3 Mupirocin Susc Pt Isolate OrdQn Nitrofurantoin 18955-5 Nitrofurantoin Susc Pt Isolate OrdQn Norfloxacin 18956-3 Norfloxacin Susc Pt Isolate OrdQn Penicillin 18964-7 Penicillin Susc Pt Isolate OrdQn Piperacillin 18969-6 Piperacillin Susc Pt Isolate OrdQn Polymyxin B (Colistin) 18972-0 Polymyxin B Susc Pt Isolate OrdQn Quinupristin/Dalfopristin (Synercid) 23640-6 Quinupristin+Dalfopristin Susc Pt Isolate OrdQn Rifampicin 18974-6 Rifampin Susc Pt Isolate OrdQn Streptomycin (high level) 18983-7 Streptomycin.high potency Susc Pt Isolate OrdQn Tazocin 18970-4 Piperacillin+Tazobactam Susc Pt Isolate OrdQn Teicoplanin 18989-4 Teicoplanin Susc Pt Isolate OrdQn Tetracycline 18993-6 Tetracycline Susc Pt Isolate OrdQn Tigecycline 42357-4 Tigecycline Susc Pt Isolate OrdQn Timentin 18995-1 Ticarcillin+Clavulanate Susc Pt Isolate OrdQn Tobramycin 18996-9 Tobramycin Susc Pt Isolate OrdQn Trimethoprim 18997-7 Trimethoprim Susc Pt Isolate OrdQn Vancomycin 19000-9 Vancomycin Susc Pt Isolate OrdQn

Antifungals Amphotericin B 18863-1 Amphotericin B Susc Pt Isolate OrdQn 15 Flucytosine 18855-7 5-Fluorocytosine Susc Pt Isolate OrdQn

Fluconazole 18924-1 Fluconazole Susc Pt Isolate OrdQn Itraconazole 32603-3 Itraconazole Susc Pt Isolate OrdQn

Others ESBL 6984-9 Beta lactamase.extended spectrum Susc Pt Isolate OrdQn Metallo Beta lactamase No LOINC

Notifying Infection / Public Health departments 54217-5 Public health notifiable condition Prid Pt XXX Nom 11323-3 General health Find Pt ^Patient Nom Reported

Page 3 of 3 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Serology and Molecular Page 1 of 6

RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Alphavirus group Any No Unit 51663-3 Alphavirus RNA ACnc Pt XXX Ord Probe.amp.tar Bacillus anthracis DNA Any No Unit 41623-0 Bacillus anthracis DNA ACnc Pt XXX Ord Probe.amp.tar Bacterial 16S rRNA Any No Unit 66885-5 Bacterial 16S rRNA sequencing Prid Pt XXX Nom Barmah Forest virus IgG Ab Blood/Serum No Unit 31247-0 Barmah forest virus Ab.IgG ACnc Pt Ser Ord Barmah Forest virus IgM Ab Blood/Serum No Unit 31248-8 Barmah forest virus Ab.IgM ACnc Pt Ser Ord Bartonella henselae DNA Any No Unit 33986-1 Bartonella henselae DNA ACnc Pt XXX Ord Probe.amp.tar Bartonella quintana DNA Any No Unit 57910-2 Bartonella quintana DNA ACnc Pt XXX Ord Probe.amp.tar BK virus DNA For qualitative reporting Any No Unit 47251-4 BK virus DNA ACnc Pt XXX Ord Probe.amp.tar BK virus DNA For quantitative reporting in international units/mL Any IU/mL 42587-6 BK virus DNA ACnc Pt XXX Qn Probe.amp.tar BK virus DNA For quantitative reporting in log copies/mL Any log copies/mL 43201-3 BK virus DNA LnCnc Pt XXX Qn Probe.amp.tar BK virus DNA For quantitative reporting in copies/mL Any copies/mL 48309-9 BK virus DNA NCnc Pt XXX Qn Probe.amp.tar Bordetella pertussis DNA Any No Unit 23826-1 Bordetella pertussis DNA ACnc Pt XXX Ord Probe.amp.tar Bordetella pertussis IgA Ab Blood/Serum No Unit 29672-3 Bordetella pertussis Ab.IgA ACnc Pt Ser Ord Bordetella pertussis IgG Ab For qualitative reporting Blood/Serum No Unit 29674-9 Bordetella pertussis Ab.IgG ACnc Pt Ser Ord Bordetella pertussis IgG Ab Blood/Serum U/mL 9363-3 Bordetella pertussis Ab.IgG ACnc Pt Ser Qn Bordetella pertussis IgM Ab Blood/Serum No Unit 29673-1 Bordetella pertussis Ab.IgM ACnc Pt Ser Ord Bordetella pertussis toxin IgA Ab Blood/Serum IU/mL 23830-3 Bordetella pertussis.toxin Ab.IgA ACnc Pt Ser Qn Bordetella pertussis toxin IgG Ab Blood/Serum IU/mL 23831-1 Bordetella pertussis.toxin Ab.IgG ACnc Pt Ser Qn Bordetella pertussis toxin IgM Ab Blood/Serum ??? 23832-9 Bordetella pertussis.toxin Ab.IgM ACnc Pt Ser Qn Brucella Ab For use with agglutination assay Blood/Serum titre 19053-8 Brucella sp Ab Titr Pt Ser Qn Aggl Brucella Ab For use with complement fixation test Blood/Serum titre 6325-5 Brucella abortus Ab Titr Pt Ser Qn Comp fix Brucella IgG Ab Blood/Serum No Unit 24396-4 Brucella sp Ab.IgG ACnc Pt Ser Ord Brucella IgM Ab Blood/Serum No Unit 24397-2 Brucella sp Ab.IgM ACnc Pt Ser Ord Chikungunya virus RNA Any No Unit 51664-1 Chikungunya virus RNA ACnc Pt XXX Ord Probe.amp.tar Chikungunya virus Total Ab Blood/Serum titre 43064-5 Chikungunya virus Ab Titr Pt Ser Qn Chlamydia sp IgA Ab Blood/Serum No Unit 29677-2 Chlamydia sp Ab.IgA ACnc Pt Ser Ord Chlamydia sp IgG Ab Blood/Serum No Unit 21185-4 Chlamydia sp Ab.IgG ACnc Pt Ser Ord Chlamydia sp IgM Ab Blood/Serum No Unit 21186-2 Chlamydia sp Ab.IgM ACnc Pt Ser Ord Chlamydia sp total Ab Blood/Serum No Unit 45012-2 Chlamydia sp Ab ACnc Pt Ser Ord Chlamydia trachomatis DNA Any No Unit 21613-5 Chlamydia trachomatis DNA ACnc Pt XXX Ord Probe.amp.tar Chlamydia trachomatis IgA Ab Blood/Serum No Unit 45005-6 Chlamydia trachomatis Ab.IgA ACnc Pt Ser Ord Chlamydia trachomatis IgG Ab Blood/Serum No Unit 43848-1 Chlamydia trachomatis Ab.IgG ACnc Pt Ser Ord Chlamydia trachomatis IgM Ab Blood/Serum No Unit 41157-9 Chlamydia trachomatis Ab.IgM ACnc Pt Ser Ord Chlamydia trachomatis L2 DNA) Lymphogranuloma venerum Any No Unit 47211-8 Chlamydia trachomatis L2 DNA ACnc Pt XXX Ord Probe.amp.tar Chlamydia trachomatis total Ab Blood/Serum titre 22187-9 Chlamydia trachomatis Ab Titr Pt Ser Qn

Chlamydia trachomatis total Ab For qualitative reporting other than immunofluoresence methods Blood/Serum No Unit 30204-2 Chlamydia trachomatis Ab ACnc Pt Ser Ord

Chlamydia trachomatis total Ab For qualitative reporting with immunofluoresence methodsmethods Any No Unit 6355-2 Chlamydia trachomatis Ag ACnc Pt XXX Ord IF Chlamydophila pneumoniae IgA Ab Chlamydia pneumoniae IgA Ab For qualitative reporting Blood/Serum No Unit 44982-7 Chlamydophila pneumoniae Ab.IgA ACnc Pt Ser Ord Chlamydophila pneumoniae IgA Ab Blood/Serum titre 22170-5 Chlamydophila pneumoniae Ab.IgA Titr Pt Ser Qn Chlamydophila pneumoniae IgG Ab For qualitative reporting Blood/Serum No Unit 44981-9 Chlamydophila pneumoniae Ab.IgG ACnc Pt Ser Ord Chlamydophila pneumoniae IgG Ab Blood/Serum titre 22172-1 Chlamydophila pneumoniae Ab.IgG Titr Pt Ser Qn Chlamydophila pneumoniae IgM Ab For qualitative reporting Blood/Serum No Unit 24004-4 Chlamydophila pneumoniae Ab.IgM ACnc Pt Ser Ord Chlamydophila pneumoniae IgM Ab Blood/Serum titre 22174-7 Chlamydophila pneumoniae Ab.IgM Titr Pt Ser Qn Chlamydophila pneumoniae Total Ab Blood/Serum titre 11254-0 Chlamydophila pneumoniae Ab Titr Pt Ser Qn Chlamydophila psittaci Total Ab Chlamydia psittaci Total Ab Blood/Serum titre 22176-2 Chlamydophila psittaci Ab Titr Pt Ser Qn Clostridium difficile DNA Any No Unit 61367-9 Clostridium difficile DNA ACnc Pt XXX Ord Probe.amp.tar Clostridium difficile glutamate dehydrogenase Stool No Unit 57901-1 Clostridium difficile glutamate dehydrogenase ACnc Pt Stool Ord Clostridium difficile toxin A+B Stool No Unit 34713-8 Clostridium difficile toxin A+B ACnc Pt Stool Ord Clostridium difficile toxin genes faeces For molecular assay Stool No Unit 54067-4 Clostridium difficile toxin genes ACnc Pt Stool Ord Probe.amp.tar Cryptococcus Ag Blood/Serum No Unit 31790-9 Cryptococcus sp Ag ACnc Pt Ser Ord Cryptococcus Ag Blood/Serum titre 40768-4 Cryptococcus sp Ag Titr Pt Ser Qn Cryptococcus Ag CSF CSF No Unit 31788-3 Cryptococcus sp Ag ACnc Pt CSF Ord Cryptococcus Ag CSF CSF titre 9819-4 Cryptococcus sp Ag Titr Pt CSF Qn LA Cytomegalovirus Ab IgG avidity Blood/Serum % 52984-2 Cytomegalovirus Ab.IgG avidity Ratio Pt Ser Qn EIA Cytomegalovirus DNA For qualitative reporting Any No Unit 5000-5 Cytomegalovirus DNA ACnc Pt XXX Ord Probe.amp.tar Cytomegalovirus DNA For quantitative reporting in log copies/mL Any log copies/mL 53763-9 Cytomegalovirus DNA LnCnc Pt XXX Qn Probe.amp.tar Cytomegalovirus DNA For quantitative reporting in copies/mL Any copies/mL 33006-8 Cytomegalovirus DNA NCnc Pt XXX Qn Probe.amp.tar Cytomegalovirus IgG Ab For qualitative reporting Blood/Serum No Unit 22244-8 Cytomegalovirus Ab.IgG ACnc Pt Ser Ord Cytomegalovirus IgG Ab Blood/Serum U/mL 7852-7 Cytomegalovirus Ab.IgG ACnc Pt Ser Qn Cytomegalovirus IgM Ab For qualitative reporting Blood/Serum No Unit 30325-5 Cytomegalovirus Ab.IgM ACnc Pt Ser Ord Cytomegalovirus IgM Ab For quantitative reporting in titres Blood/Serum titre 22249-7 Cytomegalovirus Ab.IgM Titr Pt Ser Qn Cytomegalovirus IgM Ab For quantitative reporting in units/mL Blood/Serum U/mL 7853-5 Cytomegalovirus Ab.IgM ACnc Pt Ser Qn Cytomegalovirus Total Ab Blood/Serum titre 22241-4 Cytomegalovirus Ab Titr Pt Ser Qn Dengue virus 1 RNA Blood/Serum No Unit 60262-3 Dengue virus 1 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus 2 RNA Blood/Serum No Unit 60420-7 Dengue virus 2 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus 3 RNA Blood/Serum No Unit 60419-9 Dengue virus 3 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus 4 RNA Blood/Serum No Unit 60418-1 Dengue virus 4 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus group RNA Blood/Serum No Unit 7855-0 Dengue virus 1, 2, 3, 4 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus IgG Ab Blood/Serum No Unit 29676-4 Dengue virus Ab.IgG ACnc Pt Ser Ord Dengue virus IgM Ab Blood/Serum No Unit 25338-5 Dengue virus Ab.IgM ACnc Pt Ser Ord Dengue virus IgM Ab Blood/Serum titre 6812-2 Dengue virus Ab.IgM Titr Pt Ser Qn Dengue virus NS1 Ag Blood/Serum No Unit 31798-2 Dengue virus Ag ACnc Pt Ser Ord Dengue virus total Ab Blood/Serum titre 33606-5 Dengue virus Ab Titr Pt Ser Qn

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RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Entamoeba histolytica Ab Blood/Serum titre 22286-9 Entamoeba histolytica Ab Titr Pt Ser Qn Enterovirus RNA Any No Unit 29591-5 Enterovirus RNA ACnc Pt XXX Ord Probe.amp.tar Enterovirus subtype RNA Any No Unit 60528-7 Enterovirus subtype Type Pt XXX Nom Probe.amp.tar Epstein Barr virus virus capsid Ab IgG EBV VCA IgG For quantitative reporting in units/mL Blood/Serum U/mL 7885-7 Epstein Barr virus capsid Ab.IgG ACnc Pt Ser Qn Epstein Barr virus virus capsid Ab IgM EBV VCA IgM Blood/Serum No Unit 30340-4 Epstein Barr virus capsid Ab.IgM ACnc Pt Ser Ord Epstein Barr virus virus capsid Ab IgM EBV VCA IgM Blood/Serum titre 20491-7 Epstein Barr virus capsid Ab.IgM Titr Pt Ser Qn Epstein Barr virus virus capsid Ab IgM EBV VCA IgM Blood/Serum U/mL 7886-5 Epstein Barr virus capsid Ab.IgM ACnc Pt Ser Qn Epstein Barr virus early Ab IgA EBV EA IgA Blood/Serum titre 47435-3 Epstein Barr virus early Ab.IgA Titr Pt Ser Qn Epstein Barr virus early Ab IgG EBV EA IgG Blood/Serum No Unit 22295-0 Epstein Barr virus early Ab.IgG ACnc Pt Ser Ord Epstein Barr virus nuclear Ab IgG EBNA IgG For qualitative reporting Blood/Serum No Unit 7883-2 Epstein Barr virus nuclear Ab.IgG ACnc Pt Ser Ord Epstein Barr virus nuclear Ab IgG EBNA IgG Blood/Serum U/mL 31374-2 Epstein Barr virus nuclear Ab.IgG ACnc Pt Ser Qn Epstein Barr virus nuclear Ab IgM EBNA IgM Blood/Serum No Unit 7884-0 Epstein Barr virus nuclear Ab.IgM ACnc Pt Ser Ord Epstein Barr virus virus capsid Ab IgG EBV VCA IgG For qualitative reporting Blood/Serum No Unit 30339-6 Epstein Barr virus capsid Ab.IgG ACnc Pt Ser Ord Epstein Barr virus virus capsid Ab IgG EBV VCA IgG For quantitative reporting in titres Blood/Serum titre 20490-9 Epstein Barr virus capsid Ab.IgG Titr Pt Ser Qn Flavivirus Group RNA Any No Unit 51665-8 Flavivirus RNA ACnc Pt XXX Ord Probe.amp.tar Francisella tularensis DNA Any No Unit 33679-2 Francisella tularensis DNA ACnc Pt XXX Ord Probe.amp.tar Helicobacter pylori IgA Ab For qualitative reporting Blood/Serum No Unit 16125-7 Helicobacter pylori Ab.IgA ACnc Pt Ser Ord Helicobacter pylori IgA Ab Blood/Serum U/mL 7901-2 Helicobacter pylori Ab.IgA ACnc Pt Ser Qn Helicobacter pylori IgG Ab For qualitative reporting Blood/Serum No Unit 16126-5 Helicobacter pylori Ab.IgG ACnc Pt Ser Ord Helicobacter pylori IgG Ab Blood/Serum U/mL 7902-0 Helicobacter pylori Ab.IgG ACnc Pt Ser Qn Helicobacter pylori Total Ab For qualitative reporting Blood/Serum No Unit 22310-7 Helicobacter pylori Ab ACnc Pt Ser Ord Helicobacter pylori Total Ab Blood/Serum U/mL 7900-4 Helicobacter pylori Ab ACnc Pt Ser Qn Hepatitis A IgG Ab Blood/Serum No Unit 32018-4 Hepatitis A virus Ab.IgG ACnc Pt Ser Ord Hepatitis A IgM Ab Blood/Serum No Unit 22314-9 Hepatitis A virus Ab.IgM ACnc Pt Ser Ord Hepatitis A Total Ab Blood/Serum No Unit 20575-7 Hepatitis A virus Ab ACnc Pt Ser Ord Hepatitis B core Ab Blood/Serum No Unit 16933-4 Hepatitis B virus core Ab ACnc Pt Ser Ord Hepatitis B core IgM Ab Blood/Serum No Unit 31204-1 Hepatitis B virus core Ab.IgM ACnc Pt Ser Ord Hepatitis B e Ab Blood/Serum No Unit 22320-6 Hepatitis B virus little e Ab ACnc Pt Ser Ord Hepatitis B e Ag Blood/Serum No Unit 31844-4 Hepatitis B virus little e Ag ACnc Pt Ser Ord Hepatitis B surface Ab Blood/Serum IU/L 16935-9 Hepatitis B virus surface Ab ACnc Pt Ser Qn Hepatitis B surface Ag Blood/Serum IU/mL 58452-4 Hepatitis B virus surface Ag ACnc Pt Ser Qn Hepatitis B surface Ag For qualitative reporting Blood/Serum No Unit 5195-3 Hepatitis B virus surface Ag ACnc Pt Ser Ord Hepatitis B Surface Ag Use as supplementary assay Blood/Serum No Unit 65633-0 Hepatitis B virus surface Ag ACnc Pt Ser Ord Confirm Hepatitis B Surface Ag Use as supplementary assay - neutralisation Blood/Serum No Unit 7905-3 Hepatitis B virus surface Ag ACnc Pt Ser Ord Neut Hepatitis B virus DNA For qualitative reporting Blood/Serum No Unit 29610-3 Hepatitis B virus DNA ACnc Pt Ser/Plas Ord Probe.amp.tar Hepatitis B virus DNA For quantitative reporting in international units/mL Blood/Serum IU/mL 42595-9 Hepatitis B virus DNA ACnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis B virus DNA For quantitative reporting in log international units/mL Blood/Serum log IU/mL 49600-0 Hepatitis B virus DNA LaCnc Pt XXX Qn Probe.amp.tar Hepatitis B virus DNA fluid For qualitative reporting Any No Unit 5009-6 Hepatitis B virus DNA ACnc Pt XXX Ord Probe.amp.tar Hepatitis B virus DNA fluid For quantitative reporting in log international units/mL Any log IU/mL 48398-2 Hepatitis B virus DNA LaCnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis B virus DNA fluid For quantitative reporting in international units/mL Any IU/mL 49360-1 Hepatitis B virus DNA ACnc Pt XXX Qn Probe.amp.tar Hepatitis C Ab Use for screening and supplementary tests Blood/Serum No Unit 16128-1 Hepatitis C virus Ab ACnc Pt Ser Ord Hepatitis C Ab immunoblot Use as supplementary test - immunoblot Blood/Serum No Unit 5199-5 Hepatitis C virus Ab ACnc Pt Ser Ord IB Hepatitis C Ag Blood/Serum pg/ml 54914-7 Hepatitis C virus Ag ACnc Pt Ser Qn EIA Hepatitis C virus Genotyping Blood/Serum No Unit 32286-7 Hepatitis C virus genotype Prid Pt Ser/Plas Nom Probe.amp.tar Hepatitis C virus RNA Blood/Serum No Unit 11259-9 Hepatitis C virus RNA ACnc Pt Ser/Plas Ord Probe.amp.tar Hepatitis C virus RNA For quantitative reporting in international units/mL Blood/Serum IU/mL 11011-4 Hepatitis C virus RNA ACnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis C virus RNA For quantitative reporting in log international units/mL Blood/Serum log IU/mL 38180-6 Hepatitis C virus RNA LaCnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis C virus RNA fluid Any No Unit 5012-0 Hepatitis C virus RNA ACnc Pt XXX Ord Probe.amp.tar Hepatitis D D Ag Blood/Serum No Unit 33464-9 Hepatitis D virus Ag ACnc Pt Ser Ord Hepatitis D IgM Ab Blood/Serum No Unit 34597-5 Hepatitis D virus Ab.IgM ACnc Pt Ser Ord Hepatitis D Total Ab Blood/Serum No Unit 13248-0 Hepatitis D virus Ab ACnc Pt Ser Ord Hepatitis E IgG Ab Blood/Serum No Unit 14211-7 Hepatitis E virus Ab.IgG ACnc Pt Ser Ord Hepatitis E IgM Ab Blood/Serum No Unit 14212-5 Hepatitis E virus Ab.IgM ACnc Pt Ser Ord Hepatitis E Total Ab Blood/Serum No Unit 13294-4 Hepatitis E virus Ab ACnc Pt Ser Ord Herpes simplex 1 IgG Ab For qualitative reporting Blood/Serum No Unit 17850-9 Herpes simplex virus 1 Ab.IgG ACnc Pt Ser Ord Herpes simplex 1 IgG Ab For quantitative reporting in units/mL Blood/Serum U/mL 7909-5 Herpes simplex virus 1 Ab.IgG ACnc Pt Ser Qn Herpes simplex 1 IgM Ab For qualitative reporting Blood/Serum No Unit 32687-6 Herpes simplex virus 1 Ab.IgM ACnc Pt Ser Ord Herpes simplex 1 IgM Ab For quantitative reporting in titre Blood/Serum titre 21326-4 Herpes simplex virus 1 Ab.IgM Titr Pt Ser Qn Herpes simplex 1 IgM Ab For quantitative reporting in units/mL Blood/Serum U/mL 7910-3 Herpes simplex virus 1 Ab.IgM ACnc Pt Ser Qn Herpes simplex 2 IgG Ab For qualitative reporting Blood/Serum No Unit 17851-7 Herpes simplex virus 2 Ab.IgG ACnc Pt Ser Ord Herpes simplex 2 IgG Ab For quantitative reporting in titre Blood/Serum titre 24014-3 Herpes simplex virus 2 Ab.IgG Titr Pt Ser Qn Herpes simplex 2 IgG Ab For quantitative reporting in units/mL Blood/Serum U/mL 7912-9 Herpes simplex virus 2 Ab.IgG ACnc Pt Ser Qn Herpes simplex 2 IgM Ab For qualitative reporting Blood/Serum No Unit 32688-4 Herpes simplex virus 2 Ab.IgM ACnc Pt Ser Ord Herpes simplex 2 IgM Ab For quantitative reporting in titre Blood/Serum titre 21327-2 Herpes simplex virus 2 Ab.IgM Titr Pt Ser Qn Herpes simplex 2 IgM Ab For quantitative reporting in units/mL Blood/Serum U/mL 7913-7 Herpes simplex virus 2 Ab.IgM ACnc Pt Ser Qn Herpes simplex 1 & 2 IgG Ab For quantitative reporting in units/mL Blood/Serum U/mL 31411-2 Herpes simplex virus 1, 2 Ab.IgG ACnc Pt Ser Qn Herpes simplex 1 & 2 IgG Ab For quantitative reporting in titre Blood/Serum titre 34613-0 Herpes simplex virus 1, 2 Ab.IgG Titr Pt Ser Qn Herpes simplex 1 & 2 IgG Ab For qualitative reporting Blood/Serum No Unit 36921-5 Herpes simplex virus 1, 2 Ab.IgG ACnc Pt Ser Ord Herpes simplex 1 & 2 IgM Ab For qualitative reporting Blood/Serum No Unit 41149-6 Herpes simplex virus 1, 2 Ab.IgM ACnc Pt Ser Ord Herpes simplex 1 & 2 IgM Ab For quantitative reporting in titre Blood/Serum titre 34152-9 Herpes simplex virus 1, 2 Ab.IgM Titr Pt Ser Qn Herpes simplex 1 & 2 IgM Ab For quantitative reporting in units/mL Blood/Serum U/mL 43030-6 Herpes simplex virus 1, 2 Ab.IgM ACnc Pt Ser Qn Herpes simplex Virus 1 & 2 total Ab For qualitative reporting Blood/Serum No Unit 22339-6 Herpes simplex virus Ab ACnc Pt Ser Ord Herpes simplex Virus 1 & 2 total Ab For qualitative reporting with immunoblot Blood/Serum No Unit 16942-5 Herpes simplex virus Ab ACnc Pt Ser Ord IB Herpes simplex Virus 1 & 2 total Ab For quantitative reporting in titre Blood/Serum titre 22341-2 Herpes simplex virus Ab Titr Pt Ser Qn Herpes simplex Virus 1 & 2 total Ab For quantitative reporting in units/mL Blood/Serum U/mL 7907-9 Herpes simplex virus Ab ACnc Pt Ser Qn Herpes simplex Virus 1 & 2 total Ab CSF CSF titre 22340-4 Herpes simplex virus Ab Titr Pt CSF Qn

Page 2 of 6 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Serology and Molecular Page 3 of 6

RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Herpes simplex virus type 1 DNA fluid Any No Unit 16130-7 Herpes simplex virus 1 DNA ACnc Pt XXX Ord Probe.amp.tar Herpes simplex virus type 2 DNA fluid Any No Unit 16131-5 Herpes simplex virus 2 DNA ACnc Pt XXX Ord Probe.amp.tar HIV 1 gp41 band With western blot method Blood/Serum No Unit 9662-8 HIV 1 gp41 Ab ACnc Pt Ser Ord IB HIV 1 p15 band With western blot method Blood/Serum No Unit 12872-8 HIV 1 p15 Ab ACnc Pt Ser Ord IB HIV 1 p17 band With western blot method Blood/Serum No Unit 9663-6 HIV 1 p17 Ab ACnc Pt Ser Ord IB HIV 1 p17, p18 bands With western blot method Blood/Serum No Unit 32827-8 HIV 1 p17, p18 Ab ACnc Pt Ser Ord IB HIV 1 p18 band With western blot method Blood/Serum No Unit 12859-5 HIV 1 p18 Ab ACnc Pt Ser Ord IB HIV 1 p24 band With western blot method Blood/Serum No Unit 9664-4 HIV 1 p24 Ab ACnc Pt Ser Ord IB HIV 1 p31 band With western blot method Blood/Serum No Unit 9666-9 HIV 1 p31 Ab ACnc Pt Ser Ord IB HIV 1 p32 band With western blot method Blood/Serum No Unit 35564-4 HIV 1 p31, p32 Ab ACnc Pt Ser Ord IB HIV 1 p40 band With western blot method Blood/Serum No Unit 35565-1 HIV 1 p40 Ab ACnc Pt Ser Ord IB HIV 1 p51 band With western blot method Blood/Serum No Unit 9667-7 HIV 1 p51 Ab ACnc Pt Ser Ord IB HIV 1 p53 band With western blot method Blood/Serum No Unit 12876-9 HIV 1 p53 Ab ACnc Pt Ser Ord IB HIV 1 p55 band With western blot method Blood/Serum No Unit 9668-5 HIV 1 p55 Ab ACnc Pt Ser Ord IB HIV 1 p66 band With western blot method Blood/Serum No Unit 9669-3 HIV 1 p66 Ab ACnc Pt Ser Ord IB HIV 1 p68 band With western blot method Blood/Serum No Unit 12894-2 HIV 1 p68 Ab ACnc Pt Ser Ord IB HIV 1 Ag confirmatory Test Blood/Serum No Unit 33660-2 HIV 1 p24 Ag ACnc Pt Ser Ord Neut HIV 1 confirmatory test With western blot method Blood/Serum No Unit 13499-9 HIV 1 Ab band pattern Imp Pt Ser Nom IB HIV 1 gp120 band With western blot method Blood/Serum No Unit 9661-0 HIV 1 gp120 Ab ACnc Pt Ser Ord IB HIV 1 gp160 band With western blot method Blood/Serum No Unit 9660-2 HIV 1 gp160 Ab ACnc Pt Ser Ord IB HIV 1 RNA For specimens other than blood Any log copies/mL 49890-7 HIV 1 RNA LnCnc Pt XXX Qn Probe.amp.tar HIV 1 RNA Blood/Serum copies/mL 20447-9 HIV 1 RNA NCnc Pt Ser/Plas Qn Probe.amp.tar HIV 1 RNA For specimens other than blood Any copies/mL 25836-8 HIV 1 RNA NCnc Pt XXX Qn Probe.amp.tar HIV 2 confirmatory test With western blot method Blood/Serum No Unit 31073-0 HIV 2 Ab band pattern Imp Pt Ser Nom IB HIV 2 gp36 band With western blot method Blood/Serum No Unit 10902-5 HIV 2 gp36 Ab ACnc Pt Ser Ord IB HIV 2 RNA Quantitative With western blot method Blood/Serum IU/mL 69354-9 HIV 2 RNA ACnc Pt Ser/Plas Qn Probe.amp.tar HIV Ab Blood/Serum No Unit 48345-3 HIV 1, O, 2 Ab ACnc Pt Ser/Plas Ord HIV Ag Rapid tests Blood/Serum No Unit 24012-7 HIV 1 Ag ACnc Pt Ser Ord HIV Ag/Ab Combination Blood/Serum No Unit 56888-1 HIV 1, 2 Ab, HIV1 p24 Ag ACnc Pt Ser Ord EIA HIV p24 Ag Blood/Serum pg/mL 42339-2 HIV 1 p24 Ag MCnc Pt Ser Qn EIA HIV p24 Ag Blood/Serum No Unit 9821-0 HIV 1 p24 Ag ACnc Pt Ser Ord HIV2 Ab Blood/Serum No Unit 7919-4 HIV 2 Ab ACnc Pt Ser Ord HTLV Ab Blood/Serum No Unit 22362-8 HTLV 1, 2 Ab ACnc Pt Ser Ord HTLV Ab Supplementary test with immunoblot Blood/Serum No Unit 16982-1 HTLV 1, 2 Ab ACnc Pt Ser Ord IB Human Papilloma virus DNA Any No Unit 44547-8 Human papilloma virus DNA ACnc Pt XXX Ord Probe.amp.sig Human Papilloma virus Genotyping Any No Unit 48560-7 Human papilloma virus genotype Prid Pt XXX Nom Probe.amp.tar For use with Digene method detecting high risk types 16, 18, 31, 33, Human Papilloma virus high risk type DNA 35, 39, 45, 51, 52, 56, 58, 59 and 68 Cervical No Unit 30167-1 Human papilloma virus 16, 18, 31, 33, 35, 39, 45, 51, 52, 56,ACnc 58, 59, 68 DNA Pt Cvx Ord Probe.amp.sig For use with Roche Cobas 4800 Human Papilloma virus assay detecting high risk types 31, 33, 35, 39, 45, 51, 52, 56,58, 59, 66 and Human Papilloma virus high risk type DNA 68 Cervical No Unit 71431-1 Human papilloma virus 31, 33, 35, 39, 45, 51, 52, 56, 58, 59,Threshold 66, 68 DNA Pt Cvx Ord Probe.amp.tar Human Papilloma virus type 16 DNA Cervical No Unit 59263-4 Human papilloma virus 16 DNA ACnc Pt Cvx Ord Probe.amp.sig Human Papilloma virus type 18 DNA Cervical No Unit 59264-2 Human papilloma virus 18 DNA ACnc Pt Cvx Ord Probe.amp.sig Hydatid total Ab For qualitative reporting Blood/Serum No Unit 25339-3 Echinococcus sp Ab ACnc Pt Ser Ord Hydatid total Ab Blood/Serum titre 25867-3 Echinococcus sp Ab Titr Pt Ser Qn Influenza A Ag For qualitative reporting with immunochromatographic test Any No Unit 31859-2 Influenza virus A Ag ACnc Pt XXX Ord Influenza A Ag For qualitative reporting with immunofluorescence method Any No Unit 5863-6 Influenza virus A Ag ACnc Pt XXX Ord IF Influenza A IgA Ab Blood/Serum No Unit 43851-5 Influenza virus A Ab.IgA ACnc Pt Ser Ord Influenza A IgG Ab Blood/Serum No Unit 43837-4 Influenza virus A Ab.IgG ACnc Pt Ser Ord Influenza A IgM Ab Blood/Serum No Unit 43838-2 Influenza virus A Ab.IgM ACnc Pt Ser Ord Influenza A RNA Any No Unit 34487-9 Influenza virus A RNA ACnc Pt XXX Ord Probe.amp.tar Influenza A Subtype Any No Unit 22827-0 Influenza virus A subtype Prid Pt XXX Nom Probe.amp.tar Influenza A total Ab For qualitative reporting Blood/Serum No Unit 22096-2 Influenza virus A Ab ACnc Pt Ser Ord Influenza A total Ab For quantitative reporting with complement fixation method Blood/Serum titre 5229-0 Influenza virus A Ab Titr Pt Ser Qn Comp fix Influenza A total Ab For quantitative reporting with complement fixation method Blood/Serum titre 22824-7 Influenza virus A Ab Titr Pt Ser Qn HAI

For quantitative reporting with methods other than Influenza A total Ab hemagglutination inhibition assay or complement fixation method Blood/Serum titre 22365-1 Influenza virus A Ab Titr Pt Ser Qn Influenza B Ag For qualitative reporting with complement fixation method Any No Unit 31864-2 Influenza virus B Ag ACnc Pt XXX Ord Influenza B Ag For qualitative reporting with immunofluorescence method Any No Unit 5867-7 Influenza virus B Ag ACnc Pt XXX Ord IF Influenza B IgA Ab Blood/Serum No Unit 43852-3 Influenza virus B Ab.IgA ACnc Pt Ser Ord Influenza B IgG Ab Blood/Serum No Unit 43839-0 Influenza virus B Ab.IgG ACnc Pt Ser Ord Influenza B IgM Ab Blood/Serum No Unit 43840-8 Influenza virus B Ab.IgM ACnc Pt Ser Ord Influenza B RNA Any No Unit 40982-1 Influenza virus B RNA ACnc Pt XXX Ord Probe.amp.tar Influenza B Total Blood/Serum No Unit 44570-0 Influenza virus B Ab ACnc Pt Ser Ord Influenza B Total Complement Fixation For quantitative reporting with complement fixation method Blood/Serum titre 5230-8 Influenza virus B Ab Titr Pt Ser Qn Comp fix Influenza B Total HAI For quantitative reporting with complement fixation method Blood/Serum titre 50709-5 Influenza virus B Ab Titr Pt Ser Qn HAI

For quantitative reporting with methods other than Influenza B Total Methodless hemagglutination inhibition assay or complement fixation method Blood/Serum titre 22367-7 Influenza virus B Ab Titr Pt Ser Qn

Interferon gamma release assay For use with assays like QuantiFERON®-TB Blood/Serum No Unit 45323-3 Mycobacterium tuberculosis tuberculin stimulated gamma ACncinterferon Pt Bld Ord Japanese encephalitis virus RNA Any No Unit 51666-6 Japanese encephalitis virus RNA ACnc Pt XXX Ord Probe.amp.tar JC virus DNA Any No Unit 42921-7 JC virus DNA ACnc Pt XXX Ord Probe.amp.tar Legionella Ag Urine pneumophilla 1 specific assay Urine No Unit 31868-3 Legionella pneumophila 1 Ag ACnc Pt Urine Ord

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RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Legionella longbeachae 1 IgM Ab Blood/Serum No Unit 17054-8 Legionella longbeachae 1 Ab.IgM ACnc Pt Ser Ord Legionella longbeachae 2 IgM Ab For qualitative reporting Blood/Serum No Unit 17056-3 Legionella longbeachae 2 Ab.IgM ACnc Pt Ser Ord Legionella longbeachae total Ab Blood/Serum No Unit 13255-5 Legionella longbeachae 1, 2 Ab ACnc Pt Ser Ord Legionella longbeachae total Ab Blood/Serum titre 32694-2 Legionella longbeachae 1, 2 Ab Titr Pt Ser Qn Legionella pneumophila 1 IgM Ab Blood/Serum titre 22382-6 Legionella pneumophila 1 Ab.IgM Titr Pt Ser Qn Legionella pneumophila 1 IgM Ab For qualitative reporting Blood/Serum No Unit 35395-3 Legionella pneumophila 1 Ab.IgM ACnc Pt Ser Ord Legionella pneumophila 1 total Ab Blood/Serum titre 17060-5 Legionella pneumophila 1 Ab Titr Pt Ser Qn Legionella pneumophila 1 total Ab Blood/Serum No Unit 40840-1 Legionella pneumophila 1 Ab ACnc Pt Ser Ord Legionella pneumophilla IgG Ab Blood/Serum titre 21362-9 Legionella pneumophila Ab.IgG Titr Pt Ser Qn IF Legionella pneumophilla IgM Ab Blood/Serum No Unit 49914-5 Legionella pneumophila 1, 2, 3, 4, 5, 6 Ab.IgM ACnc Pt Ser Ord Legionella pneumophilla Total Ab Blood/Serum titre 5237-3 Legionella pneumophila Ab Titr Pt Ser Qn IF Legionella sp IgG Ab Blood/Serum No Unit 49915-2 Legionella sp Ab.IgG ACnc Pt Ser Ord Legionella sp IgM Ab Blood/Serum titre 39559-0 Legionella sp Ab.IgM Titr Pt Ser Qn Legionella sp total Ab Blood/Serum titre 22399-0 Legionella sp Ab Titr Pt Ser Qn Leptospira borgpetersenii serovar Ballum Ab Serum titre 42996-9 Leptospira borgpetersenii serovar Ballum Ab Titr Pt Ser Qn Leptospira borgpetersenii serovar Tarrasovi Ab Blood/Serum titre 42995-1 Leptospira borgpetersenii serovar Tarrasovi Ab Titr Pt Ser Qn Leptospira interrogans Ab Blood/Serum titre 56952-5 Leptospira interrogans Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Australis Ab Blood/Serum titre 59370-7 Leptospira interrogans serovar Australis Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Bataviae Ab Blood/Serum titre 59368-1 Leptospira interrogans serovar Bataviae Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Canicola Ab Blood/Serum titre 22401-4 Leptospira interrogans serovar Canicola Ab Titr Pt Ser Qn Leptospira interrogans serovar Grippotyphosa Ab Blood/Serum titre 15478-1 Leptospira interrogans serovar Grippotyphosa Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Hardjo Ab Blood/Serum titre 15479-9 Leptospira interrogans serovar Hardjo Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Icterohaemorrhagiae Ab Blood/Serum titre 15480-7 Leptospira interrogans serovar Icterohaemorrhagiae Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Javanica Ab Blood/Serum titre 59422-6 Leptospira interrogans serovar Javanica Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Pomona Ab Blood/Serum titre 15481-5 Leptospira interrogans serovar Pomona Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Pyrogenes Ab Blood/Serum titre 59364-0 Leptospira interrogans serovar Pyrogenes Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Tarassovi Ab Blood/Serum titre 59367-3 Leptospira interrogans serovar Tarassovi Ab Titr Pt Ser Qn Aggl Leptospira sp IgM Ab Blood/Serum No Unit 23202-5 Leptospira sp Ab.IgM ACnc Pt Ser Ord Leptospira sp total Ab Blood/Serum titre 7959-0 Leptospira sp Ab Titr Pt Ser Qn M. tuberculosis ethambutol resistance Molecular assay for (embB) gene mutations Isolate No Unit 46247-3 Mycobacterium tuberculosis ethambutol resistance (embB)Prid gene Pt Isolate Nom Probe.amp.tar M. tuberculosis isoniazid resistance Molecular assay for (katG , inhA) genes mutations Any No Unit 48175-4 Mycobacterium tuberculosis isoniazid resistance (katG , inhA)ACnc genes Pt XXX Ord Probe.amp.tar M. tuberculosis rifampin resistance Molecular assay for (rpoB) gene mutations Any No Unit 48176-2 Mycobacterium tuberculosis rifampin resistance (rpoB) geneACnc Pt XXX Ord Probe.amp.tar Measles IgG Ab For qualitative reporting Blood/Serum No Unit 20479-2 Measles virus Ab.IgG ACnc Pt Ser Ord Measles IgG Ab For quantitative reporting in titres Blood/Serum titre 22502-9 Measles virus Ab.IgG Titr Pt Ser Qn Measles IgG Ab For quantitative reporting in units/mL Blood/Serum IU/mL 7962-4 Measles virus Ab.IgG ACnc Pt Ser Qn Measles IgM Ab For qualitative reporting Blood/Serum No Unit 21503-8 Measles virus Ab.IgM ACnc Pt Ser Ord Measles IgM Ab Blood/Serum titre 22506-0 Measles virus Ab.IgM Titr Pt Ser Qn Measles Total Ab Blood/Serum titre 22499-8 Measles virus Ab Titr Pt Ser Qn Measles Total Ab For qualitative reporting Blood/Serum No Unit 46197-0 Measles virus Ab ACnc Pt Ser Ord Measles virus RNA Any No Unit 48508-6 Measles virus RNA ACnc Pt XXX Ord Probe.amp.tar Methicillin resistant Staphylococcus aureus DNA MRSA Molecular assays detecting mecA / nuc gene Any No Unit 35492-8 Staphylococcus aureus.methicillin resistant DNA ACnc Pt XXX Ord Probe.amp.tar Methicillin resistant Staphylococcus DNA MRSA DNA 35492-8 Staphylococcus aureus.methicillin resistant DNA ACnc Pt XXX Ord Probe.amp.tar Mumps IgG Ab For qualitative reporting Blood/Serum No Unit 22415-4 Mumps virus Ab.IgG ACnc Pt Ser Ord Mumps IgG Ab For quantitative reporting in titres Blood/Serum titre 22417-0 Mumps virus Ab.IgG Titr Pt Ser Qn Mumps IgG Ab For quantitative reporting in units/mL Blood/Serum U/mL 7966-5 Mumps virus Ab.IgG ACnc Pt Ser Qn Mumps IgG Ab CSF CSF No Unit 39011-2 Mumps virus Ab.IgG ACnc Pt CSF Ord Mumps IgM Ab For qualitative reporting Blood/Serum No Unit 22418-8 Mumps virus Ab.IgM ACnc Pt Ser Ord Mumps IgM Ab Blood/Serum titre 22420-4 Mumps virus Ab.IgM Titr Pt Ser Qn Mumps IgM Ab CSF CSF No Unit 41131-4 Mumps virus Ab.IgM ACnc Pt CSF Ord Mumps Total Ab Blood/Serum titre 22414-7 Mumps virus Ab Titr Pt Ser Qn Mumps Total Ab For qualitative reporting Blood/Serum No Unit 31503-6 Mumps virus Ab ACnc Pt Ser Ord Mumps Total Ab CSF CSF U/mL 17292-4 Mumps virus Ab ACnc Pt CSF Qn Mycobacterium avium complex rRNA Any No Unit 20463-6 Mycobacterium avium complex rRNA ACnc Pt XXX Ord Probe.amp.tar Mycobacterium tuberculosis DNA Any No Unit 38379-4 Mycobacterium tuberculosis complex DNA ACnc Pt XXX Ord Probe.amp.tar Mycobacterium tuberculosis rRNA Any No Unit 48174-7 Mycobacterium tuberculosis complex rRNA ACnc Pt XXX Ord Probe.amp.tar Mycoplasma genitalium DNA Any No Unit 69935-5 Mycoplasma genitalium DNA Threshold Pt XXX Ord Probe.amp.tar Mycoplasma IgA Ab Blood/Serum No Unit 31515-0 Mycoplasma pneumoniae Ab.IgA ACnc Pt Ser Ord Mycoplasma IgG Ab For qualitative reporting Blood/Serum No Unit 46198-8 Mycoplasma pneumoniae Ab.IgG ACnc Pt Ser Ord Mycoplasma IgG Ab For quantitative reporting in titres Blood/Serum titre 22426-1 Mycoplasma pneumoniae Ab.IgG Titr Pt Ser Qn Mycoplasma IgG Ab For quantitative reporting in units/mL Blood/Serum U/mL 7970-7 Mycoplasma pneumoniae Ab.IgG ACnc Pt Ser Qn Mycoplasma IgM Ab Blood/Serum No Unit 21406-4 Mycoplasma pneumoniae Ab.IgM ACnc Pt Ser Ord Mycoplasma pneumoniae DNA Any No Unit 29257-3 Mycoplasma pneumoniae DNA ACnc Pt XXX Ord Probe.amp.tar Mycoplasma Total Ab Blood/Serum titre 22425-3 Mycoplasma pneumoniae Ab Titr Pt Ser Qn Neisseria gonorrhoeae DNA Any No Unit 24111-7 Neisseria gonorrhoeae DNA ACnc Pt XXX Ord Probe.amp.tar Neisseria gonorrhoeae RNA Any No Unit 43305-2 Neisseria gonorrhoeae rRNA ACnc Pt XXX Ord Probe.amp.tar Neisseria meningitidis DNA Any No Unit 49671-1 Neisseria meningitidis DNA ACnc Pt XXX Ord Probe.amp.tar Neisseria meningitidis serogroup DNA Any No Unit 71788-4 Neisseria meningitidis serogroup DNA Prid Pt XXX Nom Probe.amp.tar O.tsutsugamushi Scrub Typhus total Ab Blood/Serum titre 22485-7 Orientia tsutsugamushi Ab Titr Pt Ser Qn Parvovirus B19 DNA Any No Unit 9571-1 Parvovirus B19 DNA ACnc Pt XXX Ord Probe.amp.tar Parvovirus IgG Ab Blood/Serum titre 25630-5 Parvovirus B19 Ab.IgG Titr Pt Ser Qn Parvovirus IgG Ab For qualitative reporting Blood/Serum No Unit 29675-6 Parvovirus B19 Ab.IgG ACnc Pt Ser Ord Parvovirus IgM Ab Blood/Serum titre 25631-3 Parvovirus B19 Ab.IgM Titr Pt Ser Qn Parvovirus IgM Ab For qualitative reporting Blood/Serum No Unit 7981-4 Parvovirus B19 Ab.IgM ACnc Pt Ser Ord Pneumocystis jiroveci DNA For qualitative reporting Any No Unit 6521-9 Pneumocystis jiroveci DNA ACnc Pt XXX Ord Probe.amp.tar Pneumocystis jiroveci DNA For quantitative reporting with copies/mL Any copies/mL 49441-9 Pneumocystis jiroveci DNA NCnc Pt XXX Qn Probe.amp.tar Q fever DNA Coxiella burnetii Any No Unit 23024-3 Coxiella burnetii DNA ACnc Pt XXX Ord Probe.amp.tar

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RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Q fever IgG Ab For quantitative reporting in units/mL Blood/Serum U/mL 16677-7 Coxiella burnetii Ab.IgG ACnc Pt Ser Qn Q fever IgG Ab For quantitative reporting in titres Blood/Serum titre 25335-1 Coxiella burnetii Ab.IgG Titr Pt Ser Qn Q fever IgG Ab For qualitative reporting Blood/Serum No Unit 30212-5 Coxiella burnetii Ab.IgG ACnc Pt Ser Ord Q fever IgM Ab For quantitative reporting in units/mL Blood/Serum U/mL 16678-5 Coxiella burnetii Ab.IgM ACnc Pt Ser Qn Q fever IgM Ab For quantitative reporting in titres Blood/Serum titre 25336-9 Coxiella burnetii Ab.IgM Titr Pt Ser Qn Q fever IgM Ab For qualitative reporting Blood/Serum No Unit 30213-3 Coxiella burnetii Ab.IgM ACnc Pt Ser Ord Q fever Phase 1 IgA Ab Blood/Serum titre 9706-3 Coxiella burnetii phase 1 Ab.IgA Titr Pt Ser Qn Q fever Phase 1 IgG Ab Blood/Serum titre 9708-9 Coxiella burnetii phase 1 Ab.IgG Titr Pt Ser Qn Q fever Phase 1 IgM Ab Blood/Serum titre 9710-5 Coxiella burnetii phase 1 Ab.IgM Titr Pt Ser Qn Q fever Phase 1 Total Blood/Serum titre 43050-4 Coxiella burnetii phase 1 Ab Titr Pt Ser Qn Q fever Phase 2 IgA Ab Blood/Serum titre 9707-1 Coxiella burnetii phase 2 Ab.IgA Titr Pt Ser Qn Q fever Phase 2 IgG Ab Blood/Serum titre 9709-7 Coxiella burnetii phase 2 Ab.IgG Titr Pt Ser Qn Q fever Phase 2 IgM Ab Blood/Serum titre 9711-3 Coxiella burnetii phase 2 Ab.IgM Titr Pt Ser Qn Q fever Phase 2 Total Blood/Serum titre 38389-3 Coxiella burnetii phase 2 Ab Titr Pt Ser Qn Q fever Total Blood/Serum titre 22211-7 Coxiella burnetii Ab Titr Pt Ser Qn Q fever Total For qualitative reporting Blood/Serum No Unit 23020-1 Coxiella burnetii Ab ACnc Pt Ser Ord Rickettsia australis Total Ab Blood/Serum titre 29668-1 Rickettsia australis Ab Titr Pt Ser Qn Rickettsia conorii IgG Ab Blood/Serum titre 21492-4 Rickettsia conorii Ab.IgG Titr Pt Ser Qn Rickettsia conorii IgM Ab Blood/Serum titre 21493-2 Rickettsia conorii Ab.IgM Titr Pt Ser Qn Rickettsia conorii Total Ab Blood/Serum titre 29678-0 Rickettsia conorii Ab Titr Pt Ser Qn Rickettsia prowazekii IgG Ab Blood/Serum titre 25603-2 Rickettsia prowazekii Ab.IgG Titr Pt Ser Qn Rickettsia prowazekii IgM Ab Blood/Serum titre 25604-0 Rickettsia prowazekii Ab.IgM Titr Pt Ser Qn Rickettsia prowazekii Total Ab Blood/Serum titre 29682-2 Rickettsia prowazekii Ab Titr Pt Ser Qn Rickettsia rickettsii Total Ab Blood/Serum titre 29737-4 Rickettsia rickettsii Ab Titr Pt Ser Qn Rickettsia typhi IgG Ab Blood/Serum titre 22489-9 Rickettsia typhi Ab.IgG Titr Pt Ser Qn Rickettsia typhi IgM Ab Blood/Serum titre 22490-7 Rickettsia typhi Ab.IgM Titr Pt Ser Qn Rickettsia typhi Total Ab Blood/Serum titre 29684-8 Rickettsia typhi Ab Titr Pt Ser Qn Ross River virus IgG Ab Blood/Serum No Unit 31614-1 Ross river virus Ab.IgG ACnc Pt Ser Ord Ross River virus IgM Ab Blood/Serum No Unit 31615-8 Ross river virus Ab.IgM ACnc Pt Ser Ord Ross River virus Total Ab Blood/Serum No Unit 26672-6 Ross river virus Ab ACnc Pt Ser Ord Rotavirus Ag stool For qualitative reporting with agglutination assays Stool No Unit 5879-2 Rotavirus Ag ACnc Pt Stool Ord Aggl Rotavirus Ag stool For qualitative reporting with immuno assays Stool 5880-0 Rotavirus Ag ACnc Pt Stool Ord EIA Rotavirus RNA Any No Unit 62859-4 Rotavirus RNA ACnc Pt XXX Ord Probe.amp.tar RPR RPR Blood/Serum No Unit 20507-0 Reagin Ab ACnc Pt Ser Ord RPR RPR RPR Blood/Serum titre 31147-2 Reagin Ab Titr Pt Ser Qn RPR RSV Ag ICT For qualitative reporting with immunochromatographic test Any No Unit 31950-9 Respiratory syncytial virus Ag ACnc Pt XXX Ord RSV Ag IFA For qualitative reporting with immunofluorescence method Any No Unit 5877-6 Respiratory syncytial virus Ag ACnc Pt XXX Ord IF Rubella Ab IgG avidity Blood/Serum % 52986-7 Rubella virus Ab.IgG avidity Ratio Pt Ser Qn EIA Rubella IgG Ab For qualitative reporting Blood/Serum No Unit 25514-1 Rubella virus Ab.IgG ACnc Pt Ser Ord Rubella IgG Ab Blood/Serum IU/mL 8014-3 Rubella virus Ab.IgG ACnc Pt Ser Qn Rubella IgM Ab Blood/Serum No Unit 31616-6 Rubella virus Ab.IgM ACnc Pt Ser Ord Rubella Total Ab Blood/Serum No Unit 22496-4 Rubella virus Ab ACnc Pt Ser Ord Salmonella paratyphi AH Ab Blood/Serum titre 21511-1 Salmonella paratyphi A H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi AO Ab Blood/Serum titre 33470-6 Salmonella paratyphi A O Ab Titr Pt Ser Qn Aggl Salmonella paratyphi BH Ab Blood/Serum titre 21513-7 Salmonella paratyphi B H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi BO Ab Blood/Serum titre 27938-0 Salmonella paratyphi B O Ab Titr Pt Ser Qn Aggl Salmonella typhi H Ab Blood/Serum titre 34371-5 Salmonella typhi H Ab Titr Pt Ser Qn Aggl Salmonella typhi O Ab Blood/Serum titre 34372-3 Salmonella typhi O Ab Titr Pt Ser Qn Aggl Schistosoma IgG Ab Blood/Serum U/mL 13277-9 Schistosoma sp Ab.IgG ACnc Pt Ser Qn Schistosoma IgG Ab Blood/Serum No Unit 33317-9 Schistosoma sp Ab.IgG ACnc Pt Ser Ord Schistosoma total Ab Blood/Serum titre 34594-2 Schistosoma sp Ab Titr Pt Ser Qn Sindbis virus total Ab Blood/Serum titre 42954-8 Sindbis virus Ab Titr Pt Ser Qn Spotted fever group IgG Ab Blood/Serum titre 22477-4 Rickettsia spotted fever group Ab.IgG Titr Pt Ser Qn Spotted fever group IgM Ab Blood/Serum titre 22479-0 Rickettsia spotted fever group Ab.IgM Titr Pt Ser Qn Spotted fever group total Ab Blood/Serum titre 22475-8 Rickettsia spotted fever group Ab Titr Pt Ser Qn Streptococcus AntiDNase B Ab Blood/Serum titre 14207-5 DNAse B Ab.Streptococcal Titr Pt Ser Qn Streptococcus AntiDNase B Ab Blood/Serum U/mL 5133-4 DNAse B Ab.Streptococcal ACnc Pt Ser Qn Streptococcus O Ab ASOT For quantitative reporting in units/mL Blood/Serum IU/mL 5370-2 Streptolysin O Ab ACnc Pt Ser Qn Streptococcus O Ab ASOT For qualitative reporting Blood/Serum No Unit 9788-1 Streptolysin O Ab ACnc Pt Ser Ord Streptococcus O Ab ASOT For quantitative reporting in titres Blood/Serum titre 22568-0 Streptolysin O Ab Titr Pt Ser Qn Toxoplasma gondii Ab IgG avidity Blood/Serum % 56990-5 Toxoplasma gondii Ab.IgG avidity Ratio Pt Ser Qn EIA Toxoplasmosis IgA Ab Blood/Serum U/mL 22578-9 Toxoplasma gondii Ab.IgA ACnc Pt Ser Qn Toxoplasmosis IgA Ab For qualitative reporting Blood/Serum No Unit 33459-9 Toxoplasma gondii Ab.IgA ACnc Pt Ser Ord Toxoplasmosis IgG Ab Blood/Serum No Unit 22580-5 Toxoplasma gondii Ab.IgG ACnc Pt Ser Ord Toxoplasmosis IgG Ab For quantitative reporting in titres Blood/Serum titre 22582-1 Toxoplasma gondii Ab.IgG Titr Pt Ser Qn Toxoplasmosis IgG Ab For quantitative reporting in units/mL Blood/Serum IU/mL 8039-0 Toxoplasma gondii Ab.IgG ACnc Pt Ser Qn Toxoplasmosis IgM Ab For qualitative reporting Blood/Serum No Unit 25542-2 Toxoplasma gondii Ab.IgM ACnc Pt Ser Ord Toxoplasmosis IgM Ab Blood/Serum U/mL 8040-8 Toxoplasma gondii Ab.IgM ACnc Pt Ser Qn Treponema pallidum Ab All agglutination tests including TPHA Blood/Serum No Unit 24312-1 Treponema pallidum Ab ACnc Pt Ser Ord Aggl Treponema pallidum DNA Any No Unit 41163-7 Treponema pallidum DNA ACnc Pt XXX Ord Probe.amp.tar Treponema pallidum FTA Ab Blood/Serum No Unit 5393-4 Treponema pallidum Ab ACnc Pt Ser Ord IF Treponema pallidum FTA IgM Ab Blood/Serum No Unit 17729-5 Treponema pallidum Ab.IgM ACnc Pt Ser Ord IF Treponema pallidum IgM Ab Blood/Serum No Unit 6562-3 Treponema pallidum Ab.IgM ACnc Pt Ser Ord Treponema pallidum immunoblot Blood/Serum No Unit 57032-5 Treponema pallidum Ab ACnc Pt Ser Ord IB Treponema pallidum Total Ab Blood/Serum No Unit 22587-0 Treponema pallidum Ab ACnc Pt Ser Ord Typhus group IgG Ab Blood/Serum titre 22493-1 Rickettsia typhus group Ab.IgG Titr Pt Ser Qn

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RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Typhus group IgM Ab Blood/Serum titre 22494-9 Rickettsia typhus group Ab.IgM Titr Pt Ser Qn Typhus group Total Ab Blood/Serum titre 22492-3 Rickettsia typhus group Ab Titr Pt Ser Qn Vancomycin resistance vanA gene Use for to test fro vancomycin resistant Enterococcus species Any No Unit 48814-8 Bacterial vancomycin resistance (vanA) gene ACnc Pt XXX Ord Probe.amp.tar Vancomycin resistance vanA, vanB genes Use for to test fro vancomycin resistant Enterococcus species Any No Unit 62261-3 Bacterial vancomycin resistance (vanA, vanB) genes ACnc Pt XXX Ord Probe.amp.tar Varicella Zoster IgG Ab For qualitative reporting Blood/Serum No Unit 19162-7 Varicella zoster virus Ab.IgG ACnc Pt Ser Ord Varicella Zoster IgG Ab For quantitative reporting in titres Blood/Serum titre 22602-7 Varicella zoster virus Ab.IgG Titr Pt Ser Qn Varicella Zoster IgG Ab For quantitative reporting in units/mL Blood/Serum IU/mL 8047-3 Varicella zoster virus Ab.IgG ACnc Pt Ser Qn Varicella Zoster IgM Ab For qualitative reporting Blood/Serum No Unit 21597-0 Varicella zoster virus Ab.IgM ACnc Pt Ser Ord Varicella Zoster IgM Ab Blood/Serum titre 22606-8 Varicella zoster virus Ab.IgM Titr Pt Ser Qn Varicella Zoster Total Ab For qualitative reporting Blood/Serum No Unit 22600-1 Varicella zoster virus Ab ACnc Pt Ser Ord Varicella Zoster Total Ab Blood/Serum titre 21594-7 Varicella zoster virus Ab Titr Pt Ser Qn Varicella zoster virus DNA Any No Unit 11483-5 Varicella zoster virus DNA ACnc Pt XXX Ord Probe.amp.tar VDRL CSF VDRL CSF titre 31146-4 Reagin Ab Titr Pt CSF Qn VDRL VDRL CSF For qualitative reporting CSF No Unit 5290-2 Reagin Ab ACnc Pt CSF Ord VDRL West Nile virus RNA Any No Unit 34892-0 West Nile virus RNA ACnc Pt XXX Ord Probe.amp.tar West Nile virus Total Ab Blood/Serum titre 41225-4 West Nile virus Ab Titr Pt Ser Qn Yellow fefever virus total Ab Blood/Serum titre 22618-3 Yellow fever virus Ab Titr Pt Ser Qn Yellow fever virus RNA Blood/Serum No Unit 8057-2 Yellow fever virus RNA ACnc Pt Ser Ord Probe.amp.tar Yellow fever virus IgG Ab Blood/Serum U/mL 8055-6 Yellow fever virus Ab.IgG ACnc Pt Ser Qn Yellow fever virus IgM Ab Blood/Serum U/mL 8056-4 Yellow fever virus Ab.IgM ACnc Pt Ser Qn

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Abiotrophia defectiva 113714003 | Abiotrophia defectiva | Abiotrophia sp (nutritionally variant Strep) 372391001 | Abiotrophia species | Absidia corymbifera 79354006 | Absidia corymbifera | Absidia sp. 404226006 | Absidia species | Acanthamoeba sp 372401005 | Acanthamoeba species | Acanthocephala sp 11950008 | Phylum Acanthocephala | Acetobacter liquefaciens 396951004 | Acetobacter liquefaciens | Acetobacter species 413410005 | Acetobacter species | Acholeplasma laidlawii 89082003 | Acholeplasma laidlawii | Acholeplasma sp 131200004 | Acholeplasma species | ACHROMOBACTER DENITRIFICANS 413414001 | Achromobacter denitrificans | Achromobacter piechaudii 413420000 | Achromobacter piechaudii | Achromobacter sp. 413423003 | Achromobacter species | Achromobacter xylosoxidans 413424009 | Achromobacter xylosoxidans | Acidaminococcaceae 432361001 | Family Veillonellaceae | Acidaminococcus fermentans 63005002 | Acidaminococcus fermentans | Acidaminococcus sp. 131202007 | Acidaminococcus species | Acid-fast bacillus 243365003 | Acid-fast bacillus | Acidovorax konjaci 113688001 | Acidovorax konjaci | Acidovorax species 115153000 | Acidovorax | Acinetobacter alcaligenes 7757008 | Acinetobacter | Acinetobacter baumannii 91288006 | Acinetobacter baumannii | Acinetobacter baumannii complex 113376007 | Acinetobacter calcoaceticus-Acinetobacter baumanni complex | Acinetobacter calcoaceticus subsp. anitratus 82550008 | Acinetobacter calcoaceticus | Acinetobacter haemolyticus 77045006 | Acinetobacter haemolyticus | Acinetobacter junii 13879009 | Acinetobacter junii | Acinetobacter lwoffii 83088009 | Acinetobacter lwoffi | Acinetobacter parvus 423516002 | Acinetobacter parvus | Acinetobacter radioresistens 113381003 | Acinetobacter radioresistens | ACINETOBACTER URSINGII 424791004 | Acinetobacter ursingii | Acremonium potronii 36128004 | Acremonium potroni | Acremonium sp. 115992008 | Acremonium species | Actinobacillus actinoides 41028004 | Haemophilus somnus | Actinobacillus capsulatus 6695002 | Actinobacillus capsulatus | Actinobacillus equuli 27165004 | Actinobacillus equuli | Actinobacillus hominis 43638004 | Actinobacillus hominis | Actinobacillus lignieresii 78043002 | Actinobacillus lignieresii | Actinobacillus sp. 116383006 | Actinobacillus species | Actinobacillus suis 112272003 | Actinobacillus suis | Actinobacillus ureae 1839009 | Actinobacillus ureae | Actinobaculum massiliae 416353004 | Actinobaculum massiliae | ACTINOBACULUM SCHAALII 114044001 | Actinobaculum schaalii | Actinobaculum species 416509008 | Actinobaculum species | Actinobaculum urinale 427148009 | Actinobaculum urinale | Actinomadura madura 90285002 | Actinomadura madurae | Actinomadura pelletieri 65202006 | Actinomadura pelletieri | Actinomadura sp. 41571004 | Actinomadura | Actinomyces bovis 59806008 | Actinomyces bovis | Actinomyces cardiffensis 427237005 | Actinomyces cardiffensis | Actinomyces denticolens 5844005 | Actinomyces denticolens | ACTINOMYCES EUROPAEUS 113414004 | Actinomyces europaeus | Actinomyces funkei 419012004 | Actinomyces funkei | Actinomyces georgiae 113415003 | Actinomyces georgiae | Actinomyces gerencseriae 113416002 | Actinomyces gerencseriae | Actinomyces hongkongensis 427269001 | Actinomyces hongkongensis | Actinomyces israelii 46369004 | Actinomyces israelii | Actinomyces meyeri 3174002 | Actinomyces meyeri | Actinomyces naeslundii 8940004 | Actinomyces naeslundii | Actinomyces nasicola 425520001 | Actinomyces nasicola | Actinomyces neuii subsp anitratis 113419009 | Actinomyces neuii ss anitratus | Actinomyces neuii subsp neuii 113420003 | Actinomyces neuii ss neuii | Actinomyces odontolyticus 12069003 | Actinomyces odontolyticus | Actinomyces oricola 425488009 | Actinomyces oricola | Actinomyces radicidentis 427691003 | Actinomyces radicidentis | Actinomyces radingae 113421004 | Actinomyces radingae | Actinomyces slackii 46954006 | Actinomyces slackii | Actinomyces sp. 40560008 | Actinomyces | Actinomyces suis 114045000 | Actinobaculum suis | Actinomyces turicensis 113422006 | Actinomyces turicensis | Actinomyces urogenitalis 409827009 | Actinomyces urogenitalis | Actinomyces viscosis 33529006 | Actinomyces viscosus | Actinomycetaceae 409824002 | Actinomycetaceae | Actinomycete unidentified aerobe 114256005 | Aerobic Actinomycetes | Adenoviridae 424470006 | Adenoviridae | Adenovirus 74871001 | Human adenovirus | Adenovirus 40 68883008 | Human adenovirus 40 | Adenovirus 41 29576004 | Human adenovirus 41 | AEROCOCCUS CHRISTENSENII 409818008 | Aerococcus christensenii | Aerococcus sanguicola 131205009 | Aerococcus sanguicola | Aerococcus sanguinicola 427222006 | Aerococcus sanguinicola | Aerococcus sp. 131206005 | Aerococcus species | AEROCOCCUS URINAE 243230001 | Aerococcus urinae | Aerococcus urinaehominis 409819000 | Aerococcus urinaehominis | Aerococcus viridans 78803006 | Aerococcus viridans | Aeromonadaceae 426010009 | Aeromonadaceae |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Aeromonas allosaccharophila 115026002 | Aeromonas allosaccharophila | Aeromonas bestiarum 115027006 | Aeromonas bestiarum | Aeromonas caviae 115036005 | Aeromonas punctata | Aeromonas culicicola 425828003 | Aeromonas culicicola | Aeromonas encheleia 115028001 | Aeromonas encheleia | Aeromonas eucrenophila 115030004 | Aeromonas eucrenophilia | Aeromonas hydrophila 85823000 | Aeromonas hydrophila | Aeromonas jandaei 115034008 | Aeromonas jandei | Aeromonas media 65192005 | Aeromonas media | Aeromonas molluscorum 425862003 | Aeromonas molluscorum | Aeromonas popoffii 115035009 | Aeromonas popoffii | AEROMONAS SALMONICIDA 30334005 | Aeromonas salmonicida | Aeromonas salmonicida achromogenes 64537004 | Aeromonas salmonicida ss. achromogenes | Aeromonas salmonicida masoucida 51768004 | Aeromonas salmonicida ss. masoucida | Aeromonas schubertii 115039003 | Aeromonas schubertii | Aeromonas simiae 426333004 | Aeromonas simiae | Aeromonas sobria 43731003 | Aeromonas sobria | Aeromonas sp. 131207001 | Aeromonas species | Aeromonas trota 243316008 | Aeromonas trota | Aeromonas veronii 9281006 | Aeromonas veronii | Aeromonas veronii bv sobria 425549009 | Aeromonas veronii biovar sobria | Aeromonas veronii bv veronii 425796003 | Aeromonas veronii biovar veronii | Afipia felis 114237000 | Afipia felis | Afipia sp. 114241001 | Afipia species | Agaricus bisporus 9804007 | Agaricus | Agaricus campestris 73473002 | Agaricus campestris | Aggregatibacter (Haemophilus) segnis 442651004 | Aggregatibacter segnis | Aggregatibacter aphrophilus 442683005 | Aggregatibacter aphrophilus | Aggregatibacterium actinomycetemcomitans 442680008 | Aggregatibacter actinomycetemcomitans | Agrobacterium sp (Yellow Group) 413469003 | Agrobacterium yellow group | Agrobacterium species 131208006 | Agrobacterium species | Agromyces mediolanus 425905003 | Agromyces mediolanus | Ajellomycetaceae 417579002 | Ajellomycetaceae | Alcaligenaceae 409866001 | Alcaligenaceae | Alcaligenes baumanii 91288006 | Acinetobacter baumannii | Alcaligenes faecalis 25223004 | Alcaligenes faecalis | Alcaligenes faecalis subspecies faecalis 424719003 | Alcaligenes faecalis ss. faecalis | Alcaligenes johnsonii 252000 | Acinetobacter johnsonii | Alcaligenes sp. 131201000 | Alcaligenes species | Alcaligenes xylosoxidans subsp denitrificans 42947002 | Alcaligenes xylosoxidans ss. denitrificans | ALLOIOCOCCUS OTITIS 396454000 | Alloiococcus otitis | Alloiococcus sp 396453006 | Alloiococcus | Allomonas enterica 40822006 | Allomonas enterica | Allomonas species 131209003 | Allomonas species | Alphavirus 243600001 | Alphavirus | Alternara alternata 36703000 | Alternaria alternata | Amanita muscaria 56421007 | Amanita muscaria | Amanita phalloides 18652009 | Amanita phalloides | Amanita sp. 18555001 | Amanita | Amycolatopsis sp. 131278007 | Amycolatopsis species | Anaerobiospirillum sp. 131212000 | Anaerobiospirillum species | Anaerobiospirillum succiniproducens 46934005 | Anaerobiospirillum succinoproducens | Anaerococcus hydrogenalis 413519008 | Anaerococcus hydrogenalis | Anaerococcus lactolyticus 413520002 | Anaerococcus lactolyticus | Anaerococcus octavius 413521003 | Anaerococcus octavius | Anaerococcus prevotii 413522005 | Anaerococcus prevotii | Anaerococcus species 413523000 | Anaerococcus species | Anaerococcus tetradius 427220003 | Anaerococcus tetradius | Anaerococcus vaginalis 413525007 | Anaerococcus vaginalis | Anaerorhabdus species 131213005 | Anaerorhabdus species | Ancyclostoma duodenale 81559006 | Ancylostoma duodenale | Ancylistaceae 428237008 | Family Ancylistaceae | Angiostrongylus cantonensis 48708001 | Angiostrongylus cantonensis | Angiostrongylus costaricensis 72966005 | Angiostrongylus costaricensis | Angiostrongylus species 417871007 | Angiostrongylus species | Anisakis sp. 418007006 | Anisakis species | Aphanoascus flavescens 48136002 | Aphanoascus fulvescens | Aphaoascus sp. 44312001 | Aphanoascus | Apicomplexa 106604000 | Apicomplexa | Apophysomyces elegans 71235006 | Apophysomyces elegans | Arachnia species 131215003 | Arachnia species | Arcanobacterium (Actinomyces) pyogenes 258933002 | Arcanobacterium pyogenes | Arcanobacterium bernardiae 113429002 | Arcanobacterium bernardiae | Arcanobacterium haemolyticum 44723000 | Arcanobacterium haemolyticum | Arcanobacterium species 131216002 | Arcanobacterium species | Arcobacter butzleri 114207009 | Arcobacter butzleri | Arcobacter cryaerophila 7858008 | Arcobacter cryaerophilus | Arcobacter nitrofrigilis 408629003 | Arcobacter nitrofigilis | Arcobacter skirrowii 114210002 | Arcobacter skirrowii | Arcobacter sp 131407003 | Arcobacter species | Arenavirus 58234003 | Arenavirus | Arthrobacter globiformis 3840003 | Arthrobacter globiformis | Arthrobacter species 131217006 | Arthrobacter species | Arthrodermataceae 416959009 | Arthrodermataceae | Arthrographis sp. 112406004 | Arthrographis |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Ascaris lumbricoides 19061001 | Ascaris lumbricoides | Ascaris species 372370009 | Ascaris species | Ascomycetes 415098006 | Ascomycota | Aspergillus clavatus 87240002 | Aspergillus clavatus | Aspergillus flavipes 54120001 | Aspergillus flavipes | ASPERGILLUS FLAVUS 66821001 | Aspergillus flavus | ASPERGILLUS FUMIGATUS 32684000 | Aspergillus fumigatus | Aspergillus glaucus 19556009 | Aspergillus glaucus | Aspergillus nidulans 60264008 | Aspergillus nidulans | ASPERGILLUS NIGER 89354002 | Aspergillus niger | Aspergillus repens 30019005 | Aspergillus repens | Aspergillus sp. 115994009 | Aspergillus species | Aspergillus terreus 26406003 | Aspergillus terreus | Aspergillus versicolor 48315007 | Aspergillus versicolor | Astroviridae 424055004 | Astroviridae | Astrovirus 33160002 | Human astrovirus | Atopobium rimae 113632005 | Atopobium rimae | Atopobium Species 131250006 | Atopobium species | Aureobacterium sp. 127543009 | Microbacterium species | Aureobasidium pullulans 39129008 | Aureobasidium pullulans | Aureobasidium sp. 34121008 | Aureobasidium | Avian Influenza Virus, Highly Pathogenic 389070009 | Avian influenza virus, highly pathogenic | Avian Influenza Virus, Low Pathogenic 389069008 | Avian influenza virus, low pathogenic | Babesia bovis 22405002 | Babesia bovis | Babesia microti 76828008 | Babesia microti | Babesia sp. 372376003 | Babesia species | Bacillaceae 114251000 | Bacillaceae | Bacillus alcalophilus 90547001 | Bacillus alcalophilus | Bacillus amyloliquefaciens 82289003 | Bacillus amyloliquefaciens | Bacillus aneurinolyticus 114126007 | Aneurinibacillus aneurinilyticus | Bacillus anthracis 21927003 | Bacillus anthracis | Bacillus badius 33457001 | Bacillus badius | Bacillus cereus 84408007 | Bacillus cereus | BACILLUS CEREUS GROUP 413618005 | Bacillus cereus group | Bacillus circulans 71812004 | Bacillus circulans | Bacillus circulans group 413619002 | Bacillus circulans group | Bacillus coagulans 81346002 | Bacillus coagulans | Bacillus firmus 13430008 | Bacillus firmus | Bacillus fusiformis 445617008 | Lysinibacillus fusiformis | Bacillus globisporus 429567007 | Sporosarcina globispora | Bacillus insolitus 54382003 | Bacillus insolitus | BACILLUS LENTUS 3020006 | Bacillus lentus | BACILLUS LICHENIFORMIS 74867004 | Bacillus licheniformis | Bacillus macquariensis 114102005 | Paenibacillus macquariensis | Bacillus macroides 413620008 | Bacillus macroides | BACILLUS MEGATERIUM 79109002 | Bacillus megaterium | Bacillus mycoides 33900003 | Bacillus mycoides | Bacillus novalis 429212005 | Bacillus novalis | Bacillus pantothenticus 114109001 | Virgibacillus pantothenticus | Bacillus pasteurii 43131009 | Bacillus pasteurii | Bacillus polymyxa 114105007 | Paenibacillus polymyxa | Bacillus psychrophilus 1810009 | Bacillus psychrophilus | Bacillus psychrosaccharolyticus 113476006 | Bacillus psychrosaccharolyticus | Bacillus pumilus 16580009 | Bacillus pumilus | BACILLUS SIMPLEX 113479004 | Bacillus simplex | Bacillus species 372377007 | Bacillus species | Bacillus sphaericus 70313006 | Bacillus sphaericus | Bacillus stearothermophilus 25484005 | Bacillus stearothermophilus | Bacillus subtilis 83512007 | Bacillus subtilis | Bacillus subtilis group 413621007 | Bacillus subtilis group | Bacillus thuringiensis 64840009 | Bacillus thuringiensis | Bacteroidaceae 115079007 | Bacteroidaceae | Bacteroides caccae 14342006 | Bacteroides caccae | Bacteroides capillosus 447428000 | Pseudoflavonifractor capillosus | Bacteroides corrodens 36392001 | Bacteroides ureolyticus | Bacteroides distasonis 447512008 | Parabacteroides distasonis | Bacteroides eggerthii 90072006 | Bacteroides eggerthii | Bacteroides forsythus 420048009 | Tannerella forsythia | BACTEROIDES FRAGILIS 55247009 | Bacteroides fragilis | BACTEROIDES FRAGILIS GROUP 417375007 | Bacteroides fragilis group | Bacteroides gingivalis 114163003 | Porphyromonas gingivalis | Bacteroides gracilis 113528007 | Campylobacter gracilis | Bacteroides levii 114165005 | Porphyromonas levii | Bacteroides merdae 447513003 | Parabacteroides merdae | Bacteroides ovatus 86936008 | Bacteroides ovatus | Bacteroides praecutus 75376009 | Tissierella praeacuta | Bacteroides putredinid 426435007 | Alistipes putredinis | Bacteroides sp. 131218001 | Bacteroides species | Bacteroides splanchnicus 446487001 | Odoribacter splanchnicus | Bacteroides stercoris 163009 | Bacteroides stercoris | Bacteroides tectus 431145009 | Bacteroides tectus | Bacteroides thetaiotaomicron 34236001 | Bacteroides thetaiotaomicron | Bacteroides uniformis 59604009 | Bacteroides uniformis | Bacteroides veroralis 114152001 | Prevotella veroralis | Bacteroides vulgatus 52798008 | Bacteroides vulgatus |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Balamuthia mandrillaris 115635005 | Balamuthia mandrillaris | Balantidium coli 68532001 | Balantidium coli | Balneatrix alpica 416691007 | Balneatrix alpica | Barmah Forest 56932004 | Barmah Forest virus | Bartonella bacilliformis 243352007 | Bartonella bacilliformis | Bartonella clarridgeiae 114223009 | Bartonella clarridgeiae | Bartonella elizabethae 103513003 | Bartonella elizabethae | Bartonella henselae 103510000 | Bartonella henselae | Bartonella sp. 131413007 | Bartonella species | Basidiobolaceae 428023007 | Family Basidiobolaceae | Basidiobolus ranarum 68673006 | Basidiobolus ranarum | Basidiobolus sp. 26217004 | Basidiobolus | Basidiomycete 58943001 | Basidiomycete | Beauveria bassinica 65562008 | Beauveria bassiana | Bergeyella species 131292001 | Bergeyella species | Bergeyella zoohelcum 113718000 | Bergeyella zoohelcum | Bifidobacteriaceae 417690001 | Bifidobacteriaceae | Bifidobacteriales 414956004 | Bifidobacteriales | Bifidobacterium adolescentis 34446001 | Bifidobacterium adolescentis | Bifidobacterium angulatum 33811005 | Bifidobacterium angulatum | Bifidobacterium bifidum 27108000 | Bifidobacterium bifidum | Bifidobacterium breve 35011006 | Bifidobacterium breve | Bifidobacterium catenulatum 11539003 | Bifidobacterium catenulatum | Bifidobacterium denticolens 113488008 | Bifidobacterium denticolens | Bifidobacterium dentium 36623007 | Bifidobacterium dentium | Bifidobacterium gallicum 51095003 | Bifidobacterium gallicum | Bifidobacterium infantis 35848003 | Bifidobacterium infantis | Bifidobacterium inopinatum 113489000 | Bifidobacterium inopinatum | Bifidobacterium longum 19464000 | Bifidobacterium longum | Bifidobacterium pseudocatenulatum 19333001 | Bifidobacterium pseudocatenulatum | Bifidobacterium sp. 116384000 | Bifidobacterium species | BIFIDOBACTERIUM THERMOPHILUM 10487000 | Bifidobacterium thermophilum | Bilophila species 131425005 | Bilophila species | Bipolaris australiensis 80923003 | Bipolaris australiensis | Bipolaris hawaiiensis 31335001 | Bipolaris hawaiiense | Bipolaris sp. 24145000 | Bipolaris | BK virus 83397001 | BK virus | Blastocyctis hominis 28923009 | Blastocystis hominis | Blastomyces dermatitidis 65615007 | Blastomyces dermatitidis | Blastomyces species 115995005 | Blastomyces species | Blastoschizomyces capitatus 67999003 | Blastoschizomyces pseudotrichosporon | Bordetella bronchiseptica 10620008 | Bordetella bronchiseptica | Bordetella hinzii 113495004 | Bordetella hinzii | BORDETELLA HOLMESII 116035000 | Bordetella holmesii | Bordetella parapertussis 26183002 | Bordetella parapertussis | Bordetella pertussis 5247005 | Bordetella pertussis | Bordetella petrii 416665006 | Bordetella petrii | Bordetella sp. 131220003 | Bordetella species | Bordetella trematum 113496003 | Bordetella trematum | Borrelia burgdorferii 76327009 | Borrelia burgdorferi | Borrelia duttonii 39709002 | Borrelia duttonii | Borrelia hermsii 62748005 | Borrelia hermsii | Borrelia mazzottii 3293005 | Borrelia mazzottii | Borrelia parkeri 41704008 | Borrelia parkeri | Borrelia recurrentis 34726005 | Borrelia recurrentis | Borrelia sp. 131221004 | Borrelia species | Borrelia turicatae 24986006 | Borrelia turicatae | Borrelia venezuelensis 30765003 | Borrelia venezuelensis | Botryodiplodia theobromae 784008 | Lasiodiplodia theobromae | Brachybacterium species 413700000 | Brachybacterium species | Brachyspira aalborgi 48621001 | Brachyspira aalborgi | Brachyspira pilosicoli 113517008 | Brachyspira pilosicoli | Brachyspira species 131228005 | Brachyspira species | Branching Gram-positive bacillus 417494001 | Branching Gram-positive bacillus | Brevibacillus (Bacillus) borstelensis 114116000 | Brevibacillus borstelensis | Brevibacillus (Bacillus) brevis 114117009 | Brevibacillus brevis | Brevibacillus (Bacillus) laterosporus 114121002 | Brevibacillus laterosporus | Brevibacillus (Bacillus) macerans 114101003 | Paenibacillus macerans | Brevibacillus (Bacillus) parabrevis 114122009 | Brevibacillus parabrevis | Brevibacillus (Bacillus) sp. 125049001 | Brevibacillus species | Brevibacillus centrosporus 114118004 | Brevibacillus centrosporus | BREVIBACILLUS CHOSHINENSIS 114119007 | Brevibacillus choshinensis | Brevibacillus invocatus 385495009 | Brevibacillus invocatus | Brevibacterium casei 6405003 | Brevibacterium casei | Brevibacterium epidermidis 57301000 | Brevibacterium epidermidis | Brevibacterium linens 112278004 | Brevibacterium linens | Brevibacterium mcbrellneri 431099002 | Brevibacterium mcbrellneri | Brevibacterium otitidis 113519006 | Brevibacterium otitidis | Brevibacterium paucivorans 416223009 | Brevibacterium paucivorans | Brevibacterium species 3603008 | Brevibacterium | Brevundimonas diminuta 113689009 | Brevundimonas diminuta | Brevundimonas sp. 115154006 | Brevundimonas | Brevundimonas vesicularis 113690000 | Brevundimonas vesicularis | Brucella abortus 24224000 | Brucella abortus | Brucella abortus strain 19 430982008 | Brucella abortus, vaccinal strain 19 |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Brucella canis 38025008 | Brucella canis | Brucella melitensis 72829003 | Brucella melitensis | Brucella neotomae 28461002 | Brucella neotomae | Brucella ovis 35049005 | Brucella ovis | Brucella sp. 116505000 | Brucella species | Brucella suis 48317004 | Brucella suis | Brucellaceae 116506004 | Brucellaceae | Brugia malayi 112443002 | Brugia malayi | Budvicia aquatica 75464008 | Budvicia aquatica | Budvicia species 131253008 | Budvicia species | Bulleidia extructa 413725009 | Bulleidia extructa | Bulleidia species 413727001 | Bulleidia species | Burkholderia ambifaria (genomovar VII) 416467009 | Burkholderia ambifaria | Burkholderia anthina (genovar VIII) 417565005 | Burkholderia anthina | Burkholderia caryophylli 113668000 | Burkholderia caryophylli | Burkholderia cenocepacia (genomovar III) 416941006 | Burkholderia cenocepacia | BURKHOLDERIA CEPACIA 113669008 | Burkholderia cepacia | BURKHOLDERIA CEPACIA COMPLEX 131281002 | Burkholderia cepacia complex | Burkholderia dolosa (genomovar VI) 431173006 | Burkholderia dolosa | Burkholderia fungorum 417285005 | Burkholderia fungorum | Burkholderia gladioli 113671008 | Burkholderia gladioli | Burkholderia glathei 113672001 | Burkholderia glathei | Burkholderia graminis 427474006 | Burkholderia graminis | Burkholderia mallei 113674000 | Burkholderia mallei | Burkholderia multivorans (genomovar II) 113675004 | Burkholderia multivorans | Burkholderia phenazinium 431166001 | Burkholderia phenazinium | Burkholderia pseudomallei 116399000 | Burkholderia pseudomallei | Burkholderia pyrrocinia (genomovar IX) 113677007 | Burkholderia pyrrocinia | Burkholderia sp. 116201008 | Burkholderia species | Burkholderia stabilis (genomovar IV) 416616001 | Burkholderia stabilis | Burkholderia thailandensis 113678002 | Burkholderia thailandensis | Burkholderia ubonensis 431686001 | Burkholderia ubonensis | Burkholderia vietnamiensis (genomovar V) 113680008 | Burkholderia vietnamensis | Burkholderiaceae 414197007 | Burkholderiaceae | Buttiauxella agrestis 10969007 | Buttiauxella agrestis | Buttiauxella ferragutiae 417520001 | Buttiauxella ferragutiae | Buttiauxella gaviniae 416852004 | Buttiauxella gaviniae | Buttiauxella species 131254002 | Buttiauxella species | Caliciviridae 243627002 | Family Caliciviridae | Calliphora auger 85965007 | Calliphora augur | Calliphora stygia 67605002 | Calliphora stygia | Calosphaeriaceae 415911004 | Calosphaeriaceae | Calymmatobacterium Species 131231006 | Calymmatobacterium species | Campylobacter cinaedi 29258005 | Helicobacter cinaedi | CAMPYLOBACTER COLI 40614002 | Campylobacter coli | Campylobacter consisis 9892000 | Campylobacter concisus | Campylobacter curvus 116037008 | Campylobacter curvus | Campylobacter fenneliae 58177005 | Helicobacter fennelliae | Campylobacter fetus 84210007 | Campylobacter fetus | Campylobacter fetus sp fetus 64589009 | Campylobacter fetus ss. fetus | Campylobacter fetus sp venerealis 60817000 | Campylobacter fetus ss. venerealis | Campylobacter helveticus 113522008 | Campylobacter helveticus | Campylobacter hyointestinalis 9041007 | Campylobacter hyointestinalis | Campylobacter hyointestinalis subspecies lawsonii 432459009 | Campylobacter hyointestinalis subspecies lawsonii | Campylobacter jejuni 66543000 | Campylobacter jejuni | Campylobacter jejuni subsp doylei 113523003 | Campylobacter jejuni ss doylei | CAMPYLOBACTER JEJUNI SUBSP JEJUNI 113524009 | Campylobacter jejuni ss jejuni | Campylobacter lari I 116386003 | Campylobacter lari | Campylobacter mucosalis 87402003 | Campylobacter mucosalis | Campylobacter rectus 113525005 | Campylobacter rectus | Campylobacter showae 113526006 | Campylobacter showae | Campylobacter sp. (presumptive) 35408001 | Campylobacter | Campylobacter species 116457002 | Campylobacter species | Campylobacter sputorum 91524009 | Campylobacter sputorum | Campylobacter sputorum bv bubulus 19552006 | Campylobacter sputorum ss. bubulus | Campylobacter sputorum bv fecalis 243357001 | Campylobacter sputorum biovar fecalis | Campylobacter sputorum bv sputorum 58928003 | Campylobacter sputorum ss. sputorum | Campylobacter upsaliensis 103427005 | Campylobacter upsaliensis | Campylobacterales 425417007 | Campylobacterales | CANDIDA ALBICANS 53326005 | Candida albicans | Candida catenulata 283868009 | Candida catenulata | Candida cifferi 283867004 | Candida ciferrii | Candida dubliniensis 115952006 | Candida dubliniensis | CANDIDA FAMATA 415888004 | Candida famata | CANDIDA GLABRATA 444877006 | Candida glabrata | Candida guilliermondii 16557001 | Candida guilliermondii | Candida haemulonii 243452008 | Candida haemulonii | Candida intermedia 243455005 | Candida intermedia | Candida kefyr (pseudotropicalis) 446237006 | Candida kefyr | CANDIDA KRUSEI 76995003 | Candida krusei | Candida lambica 116458007 | Candida lambica | Candida lusitaniae 47608006 | Candida lusitaniae | Candida norvegensis 243458007 | Candida norvegensis | CANDIDA PARAPSILOSIS 61302002 | Candida parapsilosis | Candida pulcherrima 243459004 | Candida pulcherrima |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Candida rugosa 23773004 | Candida rugosa | Candida sake 446283000 | Candida sake | Candida species 372381007 | Candida species | CANDIDA SPHAERICA 446284006 | Candida sphaerica | Candida stellatoidea 20849004 | Candida stellatoidea | CANDIDA TROPICALIS 47885008 | Candida tropicalis | Candida utilis 243464000 | Candida utilis | Candida vini 45362004 | Candida vini | Candida viswanathi 243465004 | Candida viswanathii | Candida zeylanoides 243466003 | Candida zeylanoides | Capillaria hepatica 5782007 | Capillaria hepatica | Capillaria philippinensis 51556005 | Capillaria philippinensis | Capillaria sp. 372382000 | Capillaria species | Capnocytophaga canimorsus 113529004 | Capnocytophaga canimorsus | Capnocytophaga cynodegmi 113530009 | Capnocytophaga cynodegmi | Capnocytophaga gingivalis 66463009 | Capnocytophaga gingivalis | Capnocytophaga granulosa 113531008 | Capnocytophaga granulosa | Capnocytophaga haemolytica 113532001 | Capnocytophaga haemolytica | Capnocytophaga ochracea 4256006 | Capnocytophaga ochracea | Capnocytophaga spp. 116387007 | Capnocytophaga species | Capnocytophaga sputigena 89892005 | Capnocytophaga sputigena | Cardiobacterium hominis 7333005 | Cardiobacterium hominis | Cardiobacterium sp. 131232004 | Cardiobacterium species | Cardiobacterium valvarum 428148007 | Cardiobacterium valvarum | Catenibacterium mitsuokai 416305003 | Catenibacterium mitsuokai | Caterpillar 86802003 | Caterpillar | Catonella morbi 363775009 | Catonella morbi | Catonella species 363776005 | Catonella species | Caulobacteraceae 422842002 | Caulobacteraceae | CDC group EO-2 415033004 | Paracoccus yeei | CDC group IVC-2 127534000 | CDC group IVc-2 | CDC group NO-1 413799006 | CDC Nonoxidizer group 1 | CDC group VB-3/Pseudomonas stutzeri 413797008 | CDC Group Vb-3 | Cedecea davisae 30854004 | Cedecea davisae | Cedecea lapagei 2345009 | Cedecea lapagei | Cedecea neteri 83767006 | Cedecea neteri | Cedecea sp. 131255001 | Cedecea species | Cellulomonas fermentans 447554006 | Actinotalea fermentans | Cellulomonas hominis 114196001 | Cellulomonas hominis | Cellulomonas humilata 431580002 | Cellulomonas humilata | Cellulomonas sp. 131405006 | Cellulomonas species | CELLULOSIMICROBIUM CELLULANS 409862004 | Cellulosimicrobium cellulans | Cellulosimicrobium Species 409861006 | Cellulosimicrobium species | Centipeda periodontii 72002007 | Centipeda periodontii | Centipeda species 131239008 | Centipeda species | Cetobacterium somerae 433798005 | Cetobacterium somerae | Chaetomiaceae 415912006 | Chaetomiaceae | Chaetomium globosum 38270005 | Chaetomium globosum | CHAETOMIUM MURORUM 417077007 | Chaetomium murorum | Chaetomium species 415895008 | Chaetomium species | Chaetothyriales 419742006 | Chaetothyriales | Chikungunya 2423009 | Chikungunya virus | Chilomastix mesnili 41340007 | Chilomastix mesnili | Chlamydia pneumoniae 103514009 | Chlamydophila pneumoniae | Chlamydia psittaci 14590003 | Chlamydophila psittaci | Chlamydia species 131418003 | Chlamydia species | Chlamydia trachomatis 63938009 | Chlamydia trachomatis | Chlamydia trachomatis, serotype A 115289001 | Chlamydia trachomatis, serotype A | Chlamydia trachomatis, serotype B 115290005 | Chlamydia trachomatis, serotype B | Chlamydia trachomatis, serotype C 115292002 | Chlamydia trachomatis, serotype C | Chlamydia Trachomatis, Serotype L1 115300003 | Chlamydia trachomatis, serotype L1 | Chlamydia Trachomatis, Serotype L2 115301004 | Chlamydia trachomatis, serotype L2 | Chlamydia Trachomatis, Serotype L3 115318000 | Chlamydia trachomatis, serotype L3 | Chlamydiaceae 115087008 | Chlamydiaceae | Chordopoxvirinae 424428001 | Chordopoxvirinae | Chromobacterium sp. 116459004 | Chromobacterium species | Chromobacterium violaceum 11042002 | Chromobacterium violaceum | Chryseobacterium (Elizabethkingia) mirocola 444815005 | Elizabethkingia miricola | Chryseobacterium gleum 113548000 | Chryseobacterium gleum | Chryseobacterium indologenes 113549008 | Chryseobacterium indologenes | Chryseobacterium scophthalmum 432598001 | Chryseobacterium scophthalmum | Chryseobacterium sp. 116388002 | Chryseobacterium species | Chryseomonas luteola 33919008 | Chryseomonas luteola | Chryseomonas species 131233009 | Chryseomonas species | Chrysoma sp. 83053009 | Chrysomya | Chrysomya bezziana 39314000 | Chrysomya bezziana | Chrysosporium queenslandicum 415896009 | Chrysosporium tropicum | Chrysosporium sp. 115993003 | Chrysosporium species | Cimex lectularius (bed bug) 67052007 | Cimex lectularius | CITROBACTER AMALONATICUS 55744003 | Citrobacter amalonaticus | Citrobacter braakii 114262000 | Citrobacter braakii | CITROBACTER FARMERI 114263005 | Citrobacter farmeri | CITROBACTER FREUNDII 6265002 | Citrobacter freundii | Citrobacter gillenii 416990006 | Citrobacter gillenii | Citrobacter intermedia 25802000 | Citrobacter intermedius |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Citrobacter koseri 114264004 | Citrobacter koseri | Citrobacter murliniae 417581000 | Citrobacter murliniae | Citrobacter rodentium 114444007 | Citrobacter rodentium | Citrobacter sedlakii 114265003 | Citrobacter sedlakii | Citrobacter species 131256000 | Citrobacter species | Citrobacter werkmanii 114442006 | Citrobacter werkmanii | Citrobacter youngae 114443001 | Citrobacter youngae | Cladophialiphora bantiana 415898005 | Cladophialophora bantiana | Cladophialophora carrionii 23903006 | Cladosporium carrionii | Cladosporium cladosporioides 21121003 | Cladosporium cladosporioides | Cladosporium species 372389009 | Cladosporium species | Clavicipitaceae 426096004 | Clavicipitaceae | Clonorchis sinensis 36559008 | Clonorchis sinensis | Clostridiaceae 424511002 | Clostridiaceae | Clostridium argentinense 113565009 | Clostridium argentiense | Clostridium barati 31169007 | Clostridium baratii | Clostridium beijerinckii 9766004 | Clostridium beijerinckii | Clostridium bifermentans 8208007 | Clostridium bifermentans | Clostridium bolteae 413879005 | Clostridium bolteae | Clostridium botulinum 13080008 | Clostridium botulinum | Clostridium botulinum (NP) B&F 20785008 | Clostridium botulinum, type B | Clostridium botulinum (NP) E 8386006 | Clostridium botulinum, type E | Clostridium botulinum (P) A&B 18065004 | Clostridium botulinum, type A | Clostridium botulinum (P) F 32829006 | Clostridium botulinum, type F | Clostridium butyricum 19084008 | Clostridium butyricum | Clostridium cadaveris 16616000 | Clostridium cadaveris | Clostridium carnis 7889007 | Clostridium carnis | Clostridium celatum 9786000 | Clostridium celatum | Clostridium chauvoei 70557006 | Clostridium chauvoei | Clostridium clostridiiforme 53220001 | Clostridium clostridiiforme | Clostridium cocleatum 24656001 | Clostridium cocleatum | Clostridium difficile 5933001 | Clostridium difficile | Clostridium disporicum 57230009 | Clostridium disporicum | Clostridium fallax 14264000 | Clostridium fallax | Clostridium glycolicum 112279007 | Clostridium glycolicum | Clostridium haemolyticum 45724004 | Clostridium haemolyticum | Clostridium hastiforme 19185007 | Clostridium hastiforme | Clostridium hathewayi 416526002 | Clostridium hathewayi | Clostridium hiranonis 417591006 | Clostridium hiranonis | Clostridium histolyticum 87443003 | Clostridium histolyticum | Clostridium hylemonae 416111005 | Clostridium hylemonae | Clostridium indolis 50884003 | Clostridium indolis | Clostridium innocuum 19415008 | Clostridium innocuum | Clostridium limosum 48305001 | Clostridium limosum | Clostridium malenominatum 12948002 | Clostridium malenominatum | Clostridium nexile 16768004 | Clostridium nexile | Clostridium novyi 45891006 | Clostridium novyi | Clostridium orbiscindens 447490001 | Flavonifractor plautii | Clostridium paraputrificum 41966004 | Clostridium paraputrificum | Clostridium pasteurianum 37965007 | Clostridium pasteurianum | CLOSTRIDIUM PERFRINGENS 8331005 | Clostridium perfringens | Clostridium putrefaciens 22321006 | Clostridium putrefaciens | Clostridium ramosum 42706008 | Clostridium ramosum | Clostridium scindens 56316008 | Clostridium scindens | CLOSTRIDIUM SEPTICUM 33101000 | Clostridium septicum | Clostridium sordellii 89313005 | Clostridium sordellii | Clostridium species 116460009 | Clostridium species | Clostridium sphenoides 65891000 | Clostridium sphenoides | Clostridium sporogenes 41468005 | Clostridium sporogenes | Clostridium subterminale 58838009 | Clostridium subterminale | Clostridium symbiosum 48321006 | Clostridium symbiosum | Clostridium tertium 81909005 | Clostridium tertium | Clostridium tetani 30917009 | Clostridium tetani | Coagulase negative Staphylococcus 116197008 | Staphylococcus, coagulase negative | Coagulase positive Staphylococcus 127535004 | Staphylococcus, coagulase positive | Coccidioides immitis 23439005 | Coccidioides immitis | Coccidioides species 115996006 | Coccidioides species | Coliform 77309002 | Coliform bacteria | Collinsella intestinalis 432267004 | Collinsella intestinalis | Collinsella stercoris 432759008 | Collinsella stercoris | Comamonadaceae 414200008 | Comamonadaceae | COMAMONAS ACIDOVORANS 20432002 | Delftia acidovorans | Comamonas aquatica 413888001 | Comamonas aquatica | Comamonas kerstersii 413892008 | Comamonas kerstersii | Comamonas species 131240005 | Comamonas species | Comamonas terrigena 81829007 | Comamonas terrigena | COMAMONAS TESTOSTERONI 43721005 | Comamonas testosteroni | Conidiobolus 42178002 | Conidiobolus | Conidiobolus coronatus 15684003 | Conidiobolus coronatus | Coprinus comatus 81470002 | Coprinus comatus | Coprobacillus cateniformis 434152005 | Coprobacillus cateniformis | Coprococcus catus 417670005 | Coprococcus catus | Coprococcus comes 416221006 | Coprococcus comes | Coprococcus eutactus 416184008 | Coprococcus eutactus | Coprococcus species 417561001 | Coprococcus species |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Cornyebacterium afermentans subsp afermentans 113609006 | Corynebacterium afermentans ss afermentans | Coronaviridae 243607003 | Family Coronaviridae | Coronavirus 243608008 | Coronavirus | Corvidae 107163001 | Corvidae | Corynebacteriaceae 409832005 | Corynebacteriaceae | Corynebacteriuim singulare 422898002 | Corynebacterium singulare | Corynebacterium 1 CDC group 243281006 | CDC Corynebacterium group I-1 | CORYNEBACTERIUM ACCOLENS 243254006 | Corynebacterium accolens | CORYNEBACTERIUM AFERMENTANS SUBSP LIPOPHILUM 113610001 | Corynebacterium afermentans ss lipophilum | Corynebacterium amycolatum 113611002 | Corynebacterium amycolatum | Corynebacterium ANF 113608003 | Corynebacterium afermentans | Corynebacterium appendicis 423659000 | Corynebacterium appendicis | CORYNEBACTERIUM AQUATICUM 65736001 | Corynebacterium aquaticum | CORYNEBACTERIUM ARGENTORATENSE 417499006 | Corynebacterium argentoratense | Corynebacterium atypicum 424209005 | Corynebacterium atypicum | Corynebacterium aurimucosum 385503009 | Corynebacterium aurimucosum | Corynebacterium auris 413925000 | Corynebacterium auris | Corynebacterium bovis 44885001 | Corynebacterium bovis | Corynebacterium CDC group F 243277006 | CDC Corynebacterium group F-1 | Corynebacterium CDC group G 243280007 | CDC Corynebacterium group G-2 | Corynebacterium confusum 417134008 | Corynebacterium confusum | Corynebacterium coyleae 116461008 | Corynebacterium coyleae | Corynebacterium D2 243275003 | CDC Corynebacterium group D-1 | Corynebacterium diphtheriae 5851001 | Corynebacterium diphtheriae | Corynebacterium diphtheriae non-toxogenic strain 443401009 | Nontoxigenic Corynebacterium diphtheriae | Corynebacterium diphtheriae subsp gravis 83675005 | Corynebacterium diphtheriae type gravis | Corynebacterium diphtheriae subsp intermedius 70876001 | Corynebacterium diphtheriae type intermedius | Corynebacterium diphtheriae subsp mitis 13755001 | Corynebacterium diphtheriae type mitis | Corynebacterium durum 413926004 | Corynebacterium durum | Corynebacterium equi 80771008 | Rhodococcus equi | CORYNEBACTERIUM FALSENII 116389005 | Corynebacterium falsenii | Corynebacterium freneyi 416914001 | Corynebacterium freneyi | CORYNEBACTERIUM GLUCURONOLYTICUM 413927008 | Corynebacterium glucuronolyticum | Corynebacterium halotolerans 424529007 | Corynebacterium halotolerans | Corynebacterium imitans 413928003 | Corynebacterium imitans | Corynebacterium jeikeium 63410006 | Corynebacterium jeikeium | Corynebacterium kroppenstedtii 363777001 | Corynebacterium kroppenstedtii | Corynebacterium kutscheri 88575000 | Corynebacterium kutscheri | Corynebacterium lipophiloflavum 416863001 | Corynebacterium lipophiloflavum | CORYNEBACTERIUM MACGINLEYI 363772007 | Corynebacterium macginleyi | Corynebacterium matruchotii 89922004 | Corynebacterium matruchotii | Corynebacterium minutissimum 83594007 | Corynebacterium minutissimum | Corynebacterium mucifaciens 413929006 | Corynebacterium mucifaciens | Corynebacterium mycetoides 58879005 | Corynebacterium mycetoides | Corynebacterium propinquum 113612009 | Corynebacterium propinquum | CORYNEBACTERIUM PSEUDODIPHTHERITICUM 12050008 | Corynebacterium pseudodiphtheriticum | Corynebacterium pseudogenitalium 243264002 | Corynebacterium pseudogenitalium | Corynebacterium pseudotuberculosis 55084001 | Corynebacterium pseudotuberculosis | Corynebacterium renale 62000003 | Corynebacterium renale | Corynebacterium resistens 442804004 | Corynebacterium resistens | Corynebacterium riegelii 131241009 | Corynebacterium riegelii | Corynebacterium simulans 416655000 | Corynebacterium simulans | Corynebacterium species 116463006 | Corynebacterium species | CORYNEBACTERIUM STRIATUM 63815007 | Corynebacterium striatum | CORYNEBACTERIUM SUNDSVALLENSE 425307003 | Corynebacterium sundsvallense | Corynebacterium thomssenii 416311000 | Corynebacterium thomssenii | Corynebacterium tuberculostearicum 416356007 | Corynebacterium tuberculostearicum | Corynebacterium ulcerans 103428000 | Corynebacterium ulcerans | Corynebacterium urealyticum 113613004 | Corynebacterium urealyticum | Corynebacterium ureicelerivorans 429443001 | Corynebacterium ureicelerivorans | Corynebacterium xerosis 27101006 | Corynebacterium xerosis | Coryneform Bacteria 116442009 | Coryneform bacteria | Coxiella burnetii 22533000 | Coxiella burnetii | Coxiella species 131412002 | Coxiella species | Coxiellaceae 414202000 | Coxiellaceae | Coxsackie A 53744000 | Human coxsackievirus A | Coxsackie B 49018005 | Human coxsackievirus B | Coxsackie B serotype 1 66619009 | Human echovirus 9 | Cryptobacterium curtum 417538003 | Cryptobacterium curtum | Cryptococcus albidus 74062009 | Cryptococcus albidus | Cryptococcus gastricus 52343001 | Cryptococcus gastricus | Cryptococcus gatti (C.neoformans var gatti) 243467007 | Cryptococcus neoformans var gattii | Cryptococcus humicolas (Candida humicola) 419816002 | Cryptococcus humicola | Cryptococcus laurentii 7299008 | Cryptococcus laurentii | Cryptococcus luteolus 48261005 | Cryptococcus luteolus | Cryptococcus neoformans 67168003 | Cryptococcus neoformans | CRYPTOCOCCUS NEOFORMANS VAR NEOFORMANS 243468002 | Cryptococcus neoformans var neoformans | Cryptococcus neoformans var. grubii 415904003 | Cryptococcus neoformans var. grubii | Cryptococcus sp. 17579001 | Cryptococcus | Cryptococcus terreus 41637000 | Cryptococcus terreus | Cryptococcus uniguttulatus 112402002 | Cryptococcus uniguttulatus | Cryptosporidium 83821001 | Cryptosporidium | Cryptosporidium parvum 51504002 | Cryptosporidium parvum | Cryptosporidium sp. 372395005 | Cryptosporidium species | Cunninghamella bertholletiae 60182000 | Cunninghamella bertholletiae |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Cunninghamella sp. 24861001 | Cunninghamella | Cupriavidus basilensis 425009006 | Cupriavidus basilensis | Cupriavidus gilardii 416329005 | Cupriavidus gilardii | Cupriavidus metallidurans 423135006 | Cupriavidus metallidurans | Cupriavidus necator 432717007 | Cupriavidus necator | Cupriavidus paucula 429465001 | Cupriavidus pauculus | Cupriavidus respiraculi 416495009 | Cupriavidus respiraculi | Curtobacterium species 116375000 | Curtobacterium species | Curvularia geniculata 22068007 | Curvularia geniculata | Curvularia lunata 33165007 | Curvularia lunata | Curvularia pallescens 67556004 | Curvularia pallescens | CURVULARIA SENEGALENSIS 26428003 | Curvularia senegalensis | Curvularia sp. 88228004 | Bipolaris spicifera | Cyclospora cayetanensis 103561005 | Cyclospora cayetanesis | Cyclospora sp 103560006 | Cyclospora | Cylindrocarpon sp. 11876007 | Cylindrocarpon | Cysticercus 78167007 | Cysticercus | Cytomegalovirus 407444007 | Cytomegalovirus | Deinococcus species 116425003 | Deinococcus species | Demodex brevis 284012007 | Demodex brevis | Demodex folliculorum 73643001 | Demodex folliculorum | Dengue 34348001 | Dengue virus | Dengue 1 60588009 | Dengue virus, type 1 | Dengue 2 41328007 | Dengue virus, type 2 | Dengue 3 8467002 | Dengue virus, type 3 | Dengue 4 36700002 | Dengue virus, type 4 | Dermabacter hominis 413977006 | Dermabacter hominis | Dermabacter species 413978001 | Dermabacter species | Dermabacteraceae 414203005 | Dermabacteraceae | Dermacoccaceae 426575002 | Dermacoccaceae | Dermacoccus (Micrococcus) nishinomyaensis 113776005 | Dermacoccus nishionmiyeaensis | Dermacoccus species 131318004 | Dermacoccus species | Dermatophilaceae 409834006 | Dermatophilaceae | Dermatophilus congolensis 58141003 | Dermatophilus congolensis | Dermatophilus species 131242002 | Dermatophilus species | Desemzia incerta 420418000 | Desemzia incerta | Desulfobvibrio desulfuricans 243394005 | Desulfovibrio desulfuricans | Desulfovibrio fairfieldensis 443019005 | Desulfovibrio fairfieldensis | Desulfovibrio piger 431119000 | Desulfovibrio piger | Desulfovibrio spp 243393004 | Desulfovibrio | Desulfovibrionaceae 426186006 | Desulfovibrionaceae | Desulfovibro vulgaris 431923009 | Desulfovibrio vulgaris | Dialister pneumosintes 114170003 | Dialister pneumosintes | Dialister species 131401002 | Dialister species | Dichelobacter nodosus 114168007 | Dichelobacter nodosus | Dichelobacter species 131400001 | Dichelobacter species | Dicrocoelium dendriticum 74389006 | Dicrocoelium dendriticum | Dientamoeba fragilis 41542000 | Dientamoeba fragilis | Dietzia maris 48923001 | Dietzia maris | Dietzia species 409846005 | Dietzia species | Dipetalonema streptocerca 49423004 | Dipetalonema streptocerca | Diphtheroids 54642001 | Diphtheroids | Diphyllobothrium lata 40406002 | Diphyllobothrium latum | Diphyllobothrium species 418338000 | Diphyllobothrium species | Dipodascaceae 415914007 | Dipodascaceae | Dipodascus 20683008 | Dipodascus | Dipylidium caninum 72883000 | Dipylidium caninum | Dirofilaria immitis 90540004 | Dirofilaria immitis | Dirofilaria species 372403008 | Dirofilaria species | DOLOSIGRANULUM PIGRUM 363765006 | Dolosigranulum pigrum | Dolosigranulum species 363766007 | Dolosigranulum species | Dorea formicigenerans 433913005 | Dorea formicigenerans | Dothideales 426602007 | Dothideales | Dothioraceae 426939006 | Dothioraceae | Dracunculus medinensis 3824001 | Dracunculus medinensis | Drechslera sp. 73185003 | Drechslera | Dysgonic fermenter 3 113535004 | DF-3 Group | Ebola Virus 424206003 | Ebolavirus | Echinococcus granulosus 243672005 | Echinococcus granulosus | Echinococcus multilocularis 86648009 | Echinococcus multilocularis | Echinococcus vogeli 44904003 | Echinococcus vogeli | Echovirus 39164004 | Human echovirus | Echovirus type 28 22521005 | Human rhinovirus 1A | Edwardsiella hoshinae 4280005 | Edwardsiella hoshinae | Edwardsiella ictaluri 68227003 | Edwardsiella ictaluri | Edwardsiella species 131257009 | Edwardsiella species | Edwardsiella tarda 74672006 | Edwardsiella tarda | Eggerthella hongkongensis 414076008 | Eggerthella hongkongensis | Eggerthella lenta 414077004 | Eggerthella lenta | EHEC, Serotype O111:H2 407160000 | EHEC, serotype O111:H2 | EHEC, Serotype O157:non-motile 124994003 | EHEC, serotype O157:non-motile | EIKENELLA CORRODENS 52591004 | Eikenella corrodens | Eikenella species 131247008 | Eikenella species | Elizabethkingia meningoseptica 425774009 | Elizabethkingia meningoseptica | Emericella nidulans 71886006 | Emericella nidulans |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Empedobacter (Flavobacterium) brevis 113629007 | Empedobacter brevis | Empedobacter species 131249006 | Empedobacter species | Encephalitozoon species 372406000 | Encephalitozoon species | Endolimax nana 53272006 | Endolimax nana | Entamoeba coli 79235009 | Entamoeba coli | Entamoeba dispar 415987008 | Entamoeba dispar | Entamoeba gingivalis 44457009 | Entamoeba gingivalis | Entamoeba hartmani 70632005 | Entamoeba hartmanni | Entamoeba histolytica 4716008 | Entamoeba histolytica | Entamoeba histolytica/Entamoeba dispar complex 363769000 | Entamoeba histolytica/Entamoeba dispar complex | Entamoeba polecki 66223005 | Entamoeba polecki | Entamoeba sp. 372407009 | Entamoeba species | Entamoebidae 106598003 | Entamoebidae | ENTEROBACTER AEROGENES 62592009 | Enterobacter aerogenes | Enterobacter amnigenus 84221003 | Enterobacter amnigenus | Enterobacter amnigenus 1 114452005 | Enterobacter amnigenus biogroup I | Enterobacter amnigenus 2 114453000 | Enterobacter amnigenus biogroup II | ENTEROBACTER ASBURIAE 33115003 | Enterobacter asburiae | Enterobacter cancerogenus 114451003 | Enterobacter cancerogenus | ENTEROBACTER CLOACAE 14385002 | Enterobacter cloacae | Enterobacter cloacae complex 414102007 | Enterobacter cloacae complex | Enterobacter cowanii 416229008 | Enterobacter cowanii | Enterobacter gergoviae 5381002 | Enterobacter gergoviae | Enterobacter hormaechei 114454006 | Enterobacter hormaechei | Enterobacter intermedius 35165009 | Enterobacter intermedius | Enterobacter kobei 114456008 | Enterobacter kobei | Enterobacter nimipressuralis 29511003 | Enterobacter nimipressuralis | Enterobacter pyrinus 114455007 | Enterobacter pyrinus | Enterobacter sakazakii 445562004 | Cronobacter sakazakii | Enterobacter species 58683007 | Enterobacter | Enterobacteriaceae 106544002 | Enterobacteriaceae | Enterobius vermicularis 55008000 | Enterobius vermicularis | Enterococcus asini 425342004 | Enterococcus asini | Enterococcus avium 87875008 | Enterococcus avium | Enterococcus casseliflavus 30949009 | Enterococcus casseliflavus | Enterococcus cecorum 113722005 | Enterococcus cecorum | Enterococcus columbae 113723000 | Enterococcus columbe | Enterococcus dispar 113724006 | Enterococcus dispar | Enterococcus durans 46464008 | Enterococcus durans | Enterococcus faecalis 78065002 | Enterococcus faecalis | Enterococcus faecium 90272000 | Enterococcus faecium | Enterococcus gallinarum 53233007 | Enterococcus gallinarum | Enterococcus gilvus 416934000 | Enterococcus gilvus | Enterococcus haemoperoxidus 423614008 | Enterococcus haemoperoxidus | Enterococcus hermanniensis 422482003 | Enterococcus hermanniensis | Enterococcus hirae 73852008 | Enterococcus hirae | Enterococcus italicus 422707007 | Enterococcus italicus | Enterococcus maladoratus 10262005 | Enterococcus malodoratus | Enterococcus moraviensis 424862009 | Enterococcus moraviensis | Enterococcus mundtii 38004008 | Enterococcus mundtii | Enterococcus pallens 417099004 | Enterococcus pallens | Enterococcus phoeniculicola 432791009 | Enterococcus phoeniculicola | Enterococcus pseudoavium 103436009 | Enterococcus pseudoavium | Enterococcus raffinosus 103437000 | Enterococcus raffinosus | Enterococcus ratti 431989005 | Enterococcus ratti | Enterococcus saccharolyticus 103438005 | Enterococcus saccharolyticus | Enterococcus solitarius 431990001 | Tetragenococcus solitarius | Enterococcus species 2785000 | Genus Enterococcus | Enterococcus villorum 424710004 | Enterococcus villorum | Enteromonas hominis 78006004 | Enteromonas hominis | Enterovirus 243633006 | Genus Enterovirus | Enterovirus 68 12997006 | Human enterovirus 68 | Enterovirus 69 78434004 | Human enterovirus 69 | Enterovirus 70 90779008 | Human enterovirus 70 | Enterovirus 71 68874003 | Human enterovirus 71 | Enterovirus 73 421603003 | Human enterovirus 73 | Enterovirus 75 421124007 | Human enterovirus 75 | Enterovirus 76 421887001 | Human enterovirus 76 | Enterovirus 77 420441008 | Human enterovirus 77 | Enterovirus 78 421170000 | Human enterovirus 78 | Epicoccum nigrum 415907005 | Epicoccum nigrum | Epicoccum sp. 372408004 | Epicoccum species | EPIDERMOPHYTON FLOCCOSUM 26403006 | Epidermophyton floccosum | Epstein-Barr virus 40168006 | Human herpesvirus 4 | Erwinia chrysanthemi 421225004 | Dickeya chrysanthemi | Erwinia persicina 431272005 | Erwinia persicina | Erwinia sp. 131258004 | Erwinia species | Erysipelothrix rhusiopathiae 48666005 | Erysipelothrix rhusiopathiae | Erysipelothrix sp. 131298002 | Erysipelothrix species | Erysipelotrichaceae 414204004 | Family Erysipelotrichaceae | Escherichia blattae 91550008 | Escherichia blattae | ESCHERICHIA COLI 112283007 | Escherichia coli | Escherichia coli O111 131261003 | Escherichia coli, serotype O111 | Escherichia coli O112 407230003 | Escherichia coli, serotype O112 | Escherichia coli O113 407286003 | Escherichia coli, serotype O113 |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Escherichia coli O114 407205001 | Escherichia coli, serotype O114 | Escherichia coli O119 407208004 | Escherichia coli, serotype O119 | Escherichia coli O124 407232006 | Escherichia coli, serotype O124 | Escherichia coli O125 407210002 | Escherichia coli, serotype O125 | Escherichia coli O126 407212005 | Escherichia coli, serotype O126 | Escherichia coli O127 407215007 | Escherichia coli, serotype O127 | Escherichia coli O128 407181000 | Escherichia coli, serotype O128 | Escherichia coli O136 407236009 | Escherichia coli, serotype O136 | Escherichia coli O142 407223009 | Escherichia coli, serotype O142 | Escherichia coli O143 407238005 | Escherichia coli, serotype O143 | Escherichia coli O157 407166006 | Escherichia coli, serotype O157 | Escherichia coli O157 H7 103429008 | EHEC, serotype O157:H7 | Escherichia coli O164 Anaerogenic Lac- 407245005 | EIEC, serotype O164:nonmotile | Escherichia coli O18 443189004 | Enteropathogenic Escherichia coli serogroup O18 | Escherichia coli O20 407164009 | Escherichia coli, serotype O20 | Escherichia coli O26 131260002 | Escherichia coli, serotype O26 | Escherichia coli O28 407226001 | Escherichia coli, serotype O28 | Escherichia coli O44 414103002 | Enteropathogenic Escherichia coli, serotype O44 | Escherichia coli O55 407195002 | Escherichia coli, serotype O55 | Escherichia coli O78 407178005 | Escherichia coli, serotype O78 | Escherichia coli O86 407200006 | Escherichia coli, serotype O86 | ESCHERICHIA COLI, INACTIVE 417207000 | Escherichia coli, inactive | Escherichia coli, toxigenic strain 116395006 | EHEC, Escherichia coli | Escherichia fergusonii 72461005 | Escherichia fergusonii | ESCHERICHIA HERMANNII 85786000 | Escherichia hermannii | Escherichia sp. 131259007 | Escherichia species | Escherichia vulneris 53013003 | Escherichia vulneris | Eubacteriaceae 422478000 | Eubacteriaceae | Eubacterium aerofaciens 417399007 | Collinsella aerofaciens | Eubacterium alectolyticum 113828002 | Pseudoramibacter alactolyticus | Eubacterium barkeri 113728009 | Eubacterium barkeri | Eubacterium biforme 20347007 | Eubacterium biforme | Eubacterium brachy 12734008 | Eubacterium brachy | Eubacterium budayi 29984006 | Eubacterium budayi | Eubacterium callanderi 113730006 | Eubacterium callanderi | Eubacterium combesii 13257008 | Eubacterium combesii | Eubacterium contortum 59949005 | Eubacterium contortum | Eubacterium cylindroides 20804002 | Eubacterium cylindroides | Eubacterium dolichum 82964000 | Eubacterium dolichum | Eubacterium eligens 66412009 | Eubacterium eligens | Eubacterium hadrum 4696003 | Eubacterium hadrum | Eubacterium hallii 58040000 | Eubacterium hallii | Eubacterium infirmum 113733008 | Eubacterium infirmum | Eubacterium limosum 87632000 | Eubacterium limosum | Eubacterium minutum 113734002 | Eubacterium minutum | Eubacterium moniliforme 46192006 | Eubacterium moniliforme | Eubacterium multiforme 67303000 | Eubacterium multiforme | Eubacterium nitrogenes 22777005 | Eubacterium nitrogenes | Eubacterium nodatum 48215005 | Eubacterium nodatum | Eubacterium ramulus 8315002 | Eubacterium ramulus | Eubacterium rectale 69189003 | Eubacterium rectale | Eubacterium saburreum 41543005 | Eubacterium saburreum | Eubacterium saphenum 113735001 | Eubacterium saphenum | Eubacterium sp. 116465004 | Eubacterium species | Eubacterium sulci 432171006 | Eubacterium sulci | Eubacterium tenue 29575000 | Eubacterium tenue | Eubacterium tortuosum 87832002 | Eubacterium tortuosum | Eubacterium ventriosum 20578007 | Eubacterium ventriosum | Ewingella americania 19027003 | Ewingella americana | Ewingella species 131262005 | Ewingella species | Exiguobacterium sp. 131404005 | Exiguobacterium species | EXOPHIALA DERMATITIDIS 20586007 | Wangiella dermatitidis | Exophiala jeanselmei 38224003 | Exophiala jeanselmei | Exophiala sp. 12210004 | Exophiala | Exophiala spinifera 66283007 | Exophiala spinifera | Exserohilum longirostratum 4551002 | Exserohilum longirostratum | EXSEROHILUM MCGINNISII 50435003 | Exserohilum Mcginnisii | Exserohilum rostratum 76951009 | Exserohilum rostratum | Exserohilum sp. 78813003 | Exserohilum | Facklamia hominis 414181002 | Facklamia hominis | Facklamia ignava 417537008 | Facklamia ignava | Facklamia languida 416607000 | Facklamia languida | Facklamia sourekii 416870001 | Facklamia sourekii | Facklamia Sp. 414182009 | Facklamia species | Faecalibacterium prausnitzii 433993006 | Faecalibacterium prausnitzii | Fasciola hepatica 112450003 | Fasciola hepatica | Fasciola species 372410002 | Fasciola species | Fasciolopsis buski 28383004 | Fasciolopsis buski | Fastidious Gram Negative Rods 414234009 | Fastidious Gram Negative Rods | Filifactor alocis 431367004 | Filifactor alocis | Filifactor species 131409000 | Filifactor species | FLAVIMONAS ORYZIHABITANS 113931000 | Pseudomonas oryzihabitans | Flavivirus 28375005 | Flavivirus | Flavobacterium species 125037002 | Flavobacterium species | Fluke 243670002 | Trematode |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Fluoribacter species 131293006 | Fluoribacter species | Fonsecaea pedrosei 69356007 | Fonsecaea pedrosoi | Fonsecaea sp. 23639003 | Fonsecaea | Francisella philomiragia 113756004 | Francisella philomiragia | Francisella species 131308009 | Francisella species | Francisella tularensis 51526001 | Francisella tularensis | Francisellaceae 426557003 | Francisellaceae | Fungus 23496000 | Fungus | Fusarium equiseti 32095005 | Fusarium equiseti | Fusarium moniliforme 58429004 | Fusarium moniliforme | Fusarium oxysporum 38836002 | Fusarium oxysporum | Fusarium proliferatum 243549003 | Fusarium proliferatum | Fusarium solani 46351008 | Fusarium solani | Fusarium sp. 35238009 | Fusarium | Fusobacteriaceae 426376002 | Fusobacteriaceae | Fusobacterium canifelinum 432342000 | Fusobacterium canifelinum | Fusobacterium gonidoformanis 84644009 | Fusobacterium gonidiaformans | FUSOBACTERIUM MORTIFERUM 112330001 | Fusobacterium mortiferum | Fusobacterium naviforme 33311002 | Fusobacterium naviforme | Fusobacterium necrogenes 17304009 | Fusobacterium necrogenes | FUSOBACTERIUM NECROPHORUM 27274008 | Fusobacterium necrophorum | Fusobacterium necrophorum subspecies necrophorum 113758003 | Fusobacterium necrophorum ss necrophorum | FUSOBACTERIUM NUCLEATUM 32763000 | Fusobacterium nucleatum | Fusobacterium nucleatum subspecies fusiforme 113760001 | Fusobacterium nucleatum ss fusiforme | Fusobacterium nucleatum subspecies nucleatum 113761002 | Fusobacterium nucleatum ss nucleatum | Fusobacterium nucleatum subspecies polymorphum 113762009 | Fusobacterium nucleatum ss polymorphum | Fusobacterium nucleatum subspecies vincentii 113763004 | Fusobacterium nucleatum ss vincentii | Fusobacterium periodonticum 69601004 | Fusobacterium periodonticum | Fusobacterium russi 85226004 | Fusobacterium russii | Fusobacterium sp. 116467007 | Fusobacterium species | Fusobacterium ulcerans 113764005 | Fusobacterium ulcerans | FUSOBACTERIUM VARIUM 1972005 | Fusobacterium varium | Gallicola barnesae 433725004 | Gallicola barnesae | Gardnerella species 131309001 | Gardnerella species | Gardnerella vaginalis 64071004 | Gardnerella vaginalis | Gemella haemolysans 37511002 | Gemella haemolysans | Gemella morbillorum 113765006 | Gemella morbillorum | Gemella sanguinis 125038007 | Gemella sanguinis | Gemella species 131311005 | Gemella species | Geobacillus (Bacillus) stearothermophilus 433616004 | Geobacillus stearothermophilus | Geobacillus (Bacillus) thermodenitrificans 433668006 | Geobacillus thermodenitrificans | Geobacillus (Bacillus) thermoglucosidasius 434278008 | Geobacillus thermoglucosidasius | Geomyces sp. 415926002 | Geomyces species | GEOTRICHUM CANDIDUM 41625002 | Geotrichum candidum | Geotrichum klebahnii (penicillatum) 446493009 | Geotrichum klebahnii | Geotrichum sp. 34324005 | Geotrichum | Giardia intestinalis 19122007 | Giardia intestinalis | Giardia lamblia 78181009 | Giardia lamblia | Giardia species 372412005 | Giardia species | Gliocladium sp. 28920007 | Gliocladium | Globicatella sanguinis 414345009 | Globicatella sanguinis | GLOBICATELLA SP. 414346005 | Globicatella species | Globicatella sulfidifaciens 414347001 | Globicatella sulfidifaciens | Glycopeptide resistant Staphylococcus aureus 404679009 | Glycopeptide resistant Staphylococcus aureus | GNB EF-4A 81325006 | Gram-negative bacterium | Gordona sp. 24871004 | Mycobacterium gordonae | Gordonia aichiensis 416711002 | Gordonia aichiensis | Gordonia bronchialis 113646005 | Gordonia bronchialis | Gordonia otitidis 443659007 | Gordonia otitidis | Gordonia polyisoprenivorans 420096009 | Gordonia polyisoprenivorans | Gordonia rubripertincta 113647001 | Gordonia rubripertincta | Gordonia species 131264006 | Gordonia species | Gordonia sputi 113648006 | Gordonia sputi | Gordonia terrae 113649003 | Gordonia terrae | Gordoniaceae 426756005 | Gordoniaceae | Gram-negative diplococcus 83410001 | Gram-negative diplococcus | Gram-Positive Bacillus 83514008 | Gram-positive bacillus | Gram-positive coccobacillus 49682003 | Gram positive coccobacillus | Gram-positive coccus 59206002 | Gram-positive coccus | Gram-positive diplococcus 11471007 | Gram-positive diplococcus | Granulicatella (Abiotrophia) elegans 115944008 | Granulicatella elegans | Granulicatella adiacens 113713009 | Granulicatella adiacens | Granulicatella sp. 414365002 | Granulicatella species | Graphium sp. 21755009 | Graphium | Grimontia hollisae 433669003 | Grimontia hollisae | Grimontia hollisae 433669003 | Grimontia hollisae | Group A Streptococcus 80166006 | Streptococcus pyogenes | Group B Streptococcus 43492007 | Group B streptococcus | Group C Streptococcus 89181007 | Streptococcus, group C | Group D Streptococcus 55547008 | Streptococcus, group D | Group F Streptococcus 83503005 | Streptococcus, group F | Group G Streptococcus 75012005 | Streptococcus, group G | Gymnoascus sp. 45792005 | Gymnoascus | Haemophilus aegyptius 27784005 | Haemophilus aegyptius | Haemophilus ducreyi 64889004 | Haemophilus ducreyi |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Haemophilus haemoglobinophilus 72339004 | Haemophilus haemoglobinophilus | Haemophilus haemolyticus 54950008 | Haemophilus haemolyticus | Haemophilus influenza VII 127511009 | Haemophilus influenzae, biotype VII | HAEMOPHILUS INFLUENZAE 44470000 | Haemophilus influenzae | Haemophilus influenzae I 127505006 | Haemophilus influenzae, biotype I | Haemophilus influenzae II 127506007 | Haemophilus influenzae, biotype II | Haemophilus influenzae III 127507003 | Haemophilus influenzae, biotype III | Haemophilus influenzae IV 127508008 | Haemophilus influenzae, biotype IV | Haemophilus influenzae non-typeable 414374000 | Haemophilus influenzae, non-typable | Haemophilus influenzae type a 103441001 | Haemophilus influenzae type A | HAEMOPHILUS INFLUENZAE TYPE B 103442008 | Haemophilus influenzae type B | Haemophilus influenzae type c 103443003 | Haemophilus influenzae type C | Haemophilus influenzae type d 103444009 | Haemophilus influenzae type D | HAEMOPHILUS INFLUENZAE TYPE E 103445005 | Haemophilus influenzae type E | HAEMOPHILUS INFLUENZAE TYPE F 103446006 | Haemophilus influenzae type F | Haemophilus influenzae v 127509000 | Haemophilus influenzae, biotype V | Haemophilus influenzae VI 127510005 | Haemophilus influenzae, biotype VI | Haemophilus influenzae VIII 127512002 | Haemophilus influenzae, biotype VIII | Haemophilus parahaemolyticus 89800007 | Haemophilus parahaemolyticus | HAEMOPHILUS PARAINFLUENZAE 51593004 | Haemophilus parainfluenzae | Haemophilus parainfluenzae I 127513007 | Haemophilus parainfluenzae, biotype I | Haemophilus parainfluenzae II 127514001 | Haemophilus parainfluenzae, biotype II | Haemophilus parainfluenzae III 127515000 | Haemophilus parainfluenzae, biotype III | Haemophilus parainfluenzae IV SEGNIS 127516004 | Haemophilus parainfluenzae, biotype IV | Haemophilus parainfluenzae V 127517008 | Haemophilus parainfluenzae, biotype V | Haemophilus parainfluenzae VI 127518003 | Haemophilus parainfluenzae, biotype VI | Haemophilus parainfluenzae VII 127519006 | Haemophilus parainfluenzae, biotype VII | Haemophilus parainfluenzae VIII 127520000 | Haemophilus parainfluenzae, biotype VIII | HAEMOPHILUS PARAPHROPHILUS 34902001 | Haemophilus paraphrophilus | Haemophilus pittmaniae 432919004 | Haemophilus pittmaniae | Haemophilus species 116469005 | Haemophilus species | Hafnia alvei 76694001 | Hafnia alvei | Hafnia species 116047006 | Hafnia species | Hallella seregens 433820002 | Hallella seregens | Hansenula polymorpha 427187009 | Pichia polymorpha | Hantavirus 49445003 | Genus Hantavirus | Helcococcus kunzii 127527002 | Helcococcus kunzii | Helcococcus species 127528007 | Helcococcus species | Helicobacter acinonychis 60081005 | Helicobacter acinonychis | Helicobacter aurati 431287000 | Helicobacter aurati | Helicobacter bilis 113537007 | Helicobacter bilis | Helicobacter canadensis 416087003 | Helicobacter canadensis | Helicobacter canis 113539005 | Helicobacter canis | Helicobacter cholecystus 113540007 | Helicobacter cholecystus | Helicobacter felis 68625001 | Helicobacter felis | Helicobacter ganmani 431448002 | Helicobacter ganmani | Helicobacter hepaticus 113541006 | Helicobacter hepaticus | Helicobacter mesocricetorum 431449005 | Helicobacter mesocricetorum | Helicobacter muridarum 78504006 | Helicobacter muridarum | Helicobacter mustelae 10402009 | Helicobacter mustelae | Helicobacter pametensis 432972000 | Helicobacter pametensis | Helicobacter pullorum 113543009 | Helicobacter pullorum | Helicobacter pylori 80774000 | Helicobacter pylori | Helicobacter rappini 49037001 | Helicobacter rappini | Helicobacter rodentium 113544003 | Helicobacter rodentium | Helicobacter salomonis 113545002 | Helicobacter salomonis | HELICOBACTER SPECIES 131234003 | Helicobacter species | Helicobacter trogontum 113546001 | Helicobacter trogontum | Helicobacter typhlonius 432973005 | Helicobacter typhlonius | Helicobacteraceae 425550009 | Helicobacteraceae | Hendersonula toruloidea 61128005 | Hendersonula toruloidea | Hendra virus 115510008 | Hendra virus | Henipavirus 407486001 | Genus Henipavirus | Hepatitis A Enterovirus 72 32452004 | HAV - Hepatitis A virus | Hepatitis B Hepadnavirus 81665004 | Hepatitis B virus | Hepatitis C 62944002 | Hepatitis C virus | Hepatitis D 83617006 | Hepatitis D virus | Heptatitis E 78475006 | Hepatitis E virus | Heptatitis G 397582004 | Hepatitis G virus | Herbaspirillum huttiense 427505008 | Herbaspirillum huttiense | Herbaspirillum species 116409008 | Herbaspirillum species | Herpes Simplex 19965007 | Human herpes simplex virus | Herpes Simplex 1 15302007 | Human herpes simplex virus type 1 | Herpes Simplex 2 13687007 | Human herpes simplex virus type 2 | Herpesviridae 128377001 | Family Herpesviridae | Herpotrichiellaceae 415915008 | Herpotrichiellaceae | Heterophyes heterophyes 15310008 | Heterophyes heterophyes | Histoplasma capsulatum 56596006 | Histoplasma capsulatum | Histoplasma species 115997002 | Histoplasma species | Holdemania filiformis 417221003 | Holdemania filiformis | Hortaea werneckii 83801002 | Exophiala werneckii | HTLV 1 Human T Lymphocyte 77457007 | Human T-lymphotropic virus 1 | HTLV 2 Human T Lymphocyte 30417003 | Human T-lymphotropic virus 2 | Human Herpes virus 6 103528003 | Human herpesvirus 6 | Human Herpes virus 7 243580008 | Human herpes virus 7 |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Human Herpesvirus 8 427605002 | Human herpesvirus 8 | Human Immunodeficiency Virus 19030005 | Human immunodeficiency virus | Human Immunodeficiency virus type 1 89293008 | Human immunodeficiency virus type I | Human Immunodeficiency virus type 2 36115006 | Human immunodeficiency virus type 2 | Human Metapneumovirus 416730002 | Human metapneumovirus | Human T-lymphotropic Virus 407515008 | Human T-lymphotropic virus | Hymenolpsis diminuta 23895005 | Hymenolepis diminuta | Hymenolpsis nana 74311004 | Hymenolepis nana | Hyphomicrobiaceae 414207006 | Hyphomicrobiaceae | Hypocreales 426663000 | Hypocreales | Ignatzschineria larvae 433508003 | Ignatzschineria larvae | Ignavigranum ruoffiae 434190004 | Ignavigranum ruoffiae | Influenza A 407479009 | Influenza A virus | Influenza A H1N1 442352004 | Influenza A virus subtype H1N1 | Influenza A H3N2 446646008 | Influenza A virus subtype H3N2 | Influenza A H5N1 421264001 | Influenzavirus type A, avian, H5N1 strain | Influenza B 407480007 | Influenza B virus | Influenza C 407482004 | Influenza C virus | Influenza Virus 55014007 | Family Orthomyxoviridae | Influenza Virus type B 407478001 | Genus Influenzavirus B | Inquilinus limosus 427977006 | Inquilinus limosus | Insects 106763003 | Class Insecta | Iodamoeba butschlii 53605000 | Iodamoeba bütschlii | Isospora belli 12633005 | Isospora belli | Isospora hominis 9037008 | Isospora hominis | Isospora species 372423009 | Isospora species | Ixodes holocyclus 40564004 | Ixodes holocyclus | Ixodes sp. (cattle tick) 27524005 | Ixodes | Japanese B encephalitis 243603004 | Japanese encephalitis virus | Japanese Encephalitis Virus Group 407540001 | Japanese encephalitis virus group | JC virus 36319009 | JC virus | Johnsonella ignava 433676008 | Johnsonella ignava | Kingella denitrificans 78676004 | Kingella denitrificans | KINGELLA KINGAE 90422000 | Kingella kingae | Kingella oralis 129080004 | Kingella oralis | Kingella potus 423288009 | Kingella potus | Kingella sp. 131313008 | Kingella species | Klebsiella granulomatis 417443008 | Klebsiella granulomatis | KLEBSIELLA ORNITHINOLYTICA 416832000 | Raoultella ornithinolytica | KLEBSIELLA OXYTOCA 40886007 | Klebsiella oxytoca | KLEBSIELLA OZAENAE 65186004 | Klebsiella pneumoniae ss. ozaenae | KLEBSIELLA PNEUMONIAE 56415008 | Klebsiella pneumoniae | Klebsiella rhinoscleromatis 17688001 | Klebsiella pneumoniae ss. rhinoscleromatis | Klebsiella singaporensis 433047006 | Klebsiella singaporensis | Klebsiella species 131269001 | Klebsiella species | KLEBSIELLA TERRIGENA 416096003 | Raoultella terrigena | Klebsiella variicola 431976004 | Klebsiella variicola | Klebsiella/Enterobacter 114459001 | Klebsiella mobilis | Kluyvera ascorbata 58493008 | Kluyvera ascorbata | Kluyvera cryocrescens 32547006 | Kluyvera cryocrescens | Kluyvera intermedia 431977008 | Kluyvera intermedia | Kluyvera species 131270000 | Kluyvera species | Kluyveromyces lactis 243430004 | Kluyveromyces lactis | Kocuria kristinae 113772007 | Kocuria kristinae | Kocuria rosea 113773002 | Kocuria rosea | Kocuria species 131316000 | Kocuria species | Kocuria varians 113774008 | Kocuria varians | Kokobera 60420002 | Kokobera virus | Kunjin 31441007 | Kunjin virus | Kurthia gibsonii 53631003 | Kurthia gibsonii | Kurthia sp. 69512006 | Kurthia | Kurthia zopfii 22581007 | Kurthia zopfii | Kytococcus (Micrococcus) sedentarius 113775009 | Kytococcus sedentarius | Kytococcus species 131317009 | Kytococcus species | Lachnospiraceae 425089009 | Lachnospiraceae | Lactobacillaceae 416363007 | Lactobacillaceae | Lactobacillus acidophilus 45707005 | Lactobacillus acidophilus | LACTOBACILLUS ALIMENTARIUS 42585007 | Lactobacillus alimentarius | Lactobacillus anisa 75436003 | Lactobacillus animalis | Lactobacillus antri 431689008 | Lactobacillus antri | Lactobacillus brevis 90396007 | Lactobacillus brevis | Lactobacillus buchneri 49217007 | Lactobacillus buchneri | Lactobacillus casei 1017006 | Lactobacillus casei | Lactobacillus catenaformis 59836004 | Lactobacillus catenaformis | Lactobacillus cellobiosus 65506008 | Lactobacillus fermentum | Lactobacillus coleohominis 431569002 | Lactobacillus coleohominis | Lactobacillus crispatus 89237007 | Lactobacillus crispatus | Lactobacillus curvatus 52265004 | Lactobacillus curvatus | Lactobacillus fornicalis 432203002 | Lactobacillus fornicalis | LACTOBACILLUS GASSERI 71158000 | Lactobacillus gasseri | Lactobacillus gastricus 431787001 | Lactobacillus gastricus | LACTOBACILLUS INERS 431967006 | Lactobacillus iners | Lactobacillus jensenii 65904004 | Lactobacillus jensenii | Lactobacillus malefermentans 432575009 | Lactobacillus malefermentans | Lactobacillus minutus 113630002 | Atopobium minutum |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Lactobacillus oris 87480009 | Lactobacillus oris | Lactobacillus paracasei 113792000 | Lactobacillus paracasei | LACTOBACILLUS PLANTARUM 14332009 | Lactobacillus plantarum | Lactobacillus reuteri 86271002 | Lactobacillus reuteri | Lactobacillus rhamnosus 113798001 | Lactobacillus rhamnosus | Lactobacillus sakei 39861009 | Lactobacillus sakei | Lactobacillus salivarius 37809002 | Lactobacillus salivarius | Lactobacillus species 116472003 | Lactobacillus species | Lactobacillus ultunensis 432284005 | Lactobacillus ultunensis | Lactobacillus vaginalis 113803005 | Lactobacillus vaginalis | Lactobacillus vitulinus 10276006 | Lactobacillus vitulinus | Lactococcus cremoris 81454004 | Lactococcus lactis subsp. cremoris | Lactococcus garvieae 27716002 | Lactococcus garvieae | LACTOCOCCUS LACTIS 62079003 | Lactococcus lactis | Lactococcus lactis subsp. lactis 38518005 | Lactococcus lactis subsp. lactis | Lactococcus lactis subspecies hordniae 64724000 | Lactococcus lactis subsp. hordniae | Lactococcus plantarum 90261005 | Lactococcus plantarum | Lactococcus species 131321002 | Lactococcus species | Lautropia mirabilis 116052001 | Lautropia mirabilis | Lautropia species 116051008 | Lautropia species | Leclercia adecarboxylata 57459006 | Leclercia adecarboxylata | Lecythophora mutabilis 38749003 | Lecythophora mutabilis | Leech 60578008 | Hirudo | Legionella anisa 18214000 | Legionella anisa | Legionella birminghamensis 22592008 | Legionella birminghamensis | Legionella bozemanii 113719008 | Fluoribacter bozemanae | Legionella brunensis 103448007 | Legionella brunensis | Legionella cherrii 52462004 | Legionella cherrii | Legionella cincinnatiensis 58923007 | Legionella cincinnatiensis | Legionella dumoffii 113720002 | Fluoribacter dumoffii | Legionella erythra 28109006 | Legionella erythra | Legionella feelei 17083009 | Legionella feeleii | Legionella gormanii 113721003 | Fluoribacter gormanii | Legionella hackeliae 58939000 | Legionella hackeliae | Legionella israelensis 3128001 | Legionella israelensis | Legionella jamestowniensis 89709001 | Legionella janestowniensis | Legionella jordanis 39739007 | Legionella jordanis | Legionella lansingensis 103452007 | Legionella lansingensis | Legionella longbeachae 89605004 | Legionella longbeachae | Legionella longbeachae serogroup 1 115515003 | Legionella longbeachae, serogroup 1 | Legionella longbeachae serogroup 2 115516002 | Legionella longbeachae, serogroup 2 | Legionella micdadei 116380009 | Tatlockia micdadei | Legionella moravica 103454008 | Legionella moravica | Legionella oakridgensis 638008 | Legionella oakridgensis | Legionella parisiensis 38322001 | Legionella parisiensis | Legionella pneumophila 80897008 | Legionella pneumophila | Legionella pneumophila Serogroup 1 103463005 | Legionella pneumophila serogroup 1 | Legionella pneumophila serogroup 2 103464004 | Legionella pneumophila serogroup 2 | Legionella pneumophila serogroup 3 103465003 | Legionella pneumophila serogroup 3 | Legionella pneumophila serogroup 4 103466002 | Legionella pneumophila serogroup 4 | Legionella pneumophila serogroup 5 103467006 | Legionella pneumophila serogroup 5 | Legionella pneumophila serogroup 6 103468001 | Legionella pneumophila serogroup 6 | Legionella pneumophila serogroup 7 103469009 | Legionella pneumophila serogroup 7 | Legionella pneumophila serogroup 8 103470005 | Legionella pneumophila serogroup 8 | Legionella pneumophila serogroup 9 103471009 | Legionella pneumophila serogroup 9 | Legionella quinlivanii 103459003 | Legionella quinlivanii | Legionella rubrilucens 17298000 | Legionella rubilucens | Legionella sainthelensi 87271006 | Legionella sainthelens | Legionella sp. 115514004 | Legionella species | Legionella spiritensis 64930007 | Legionella spiritensis | Legionella steigerwaltii 14121003 | Legionella steigerwaltii | Legionella tucsonensis 103461007 | Legionella tucsonensis | Legionella wadsworthii 8147000 | Legionella wadsworthii | Leifsonia (Corynebacterium) aquatica 414591000 | Leifsonia aquatica | Leifsonia species 414595009 | Leifsonia species | Leishmania braziliensis 7400004 | Leishmania brasiliensis complex | Leishmania donovani 79781008 | Leishmania donovani complex | Leishmania mexicana 243654004 | Leishmania mexicana | Leishmania sp. 419793002 | Leishmania species | Leishmania tropica 243653005 | Leishmania tropica | Leminorella grimontii 74357002 | Leminorella grimontii | Leminorella richardii 45354007 | Leminorella richardii | Leminorella sp. 131273003 | Leminorella species | Lentivirus 407415005 | Genus Lentivirus | Leptosphaeriaceae 426600004 | Leptosphaeriaceae | Leptosphaerulina sp. 42797005 | Leptosphaeria | Leptospira alexanderi 432579003 | Leptospira alexanderi | Leptospira biflexa 116402004 | Leptospira biflexa | Leptospira borgpetersenii 113809009 | Leptospira borgpetersenii | Leptospira inadai 113810004 | Leptospira inadai | Leptospira interrogans 116401006 | Leptospira interrogans | Leptospira Interrogans Serovar Hardjo 53343008 | Leptospira interrogans, serogroup hardjo | Leptospira Interrogans Serovar Icterohaemorrhagiae 19251003 | Leptospira interrogans, serogroup icterohemorrhagiae | Leptospira Interrogans Serovar Pomona 302610000 | Leptospira interrogans serovar pomona | Leptospira kirschneri 113811000 | Leptospira kirschneri |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Leptospira meyeri 113812007 | Leptospira meyeri | Leptospira noguchii 113813002 | Leptospira noguchii | Leptospira sp. 116200009 | Leptospira species | Leptospira weilii 113816005 | Leptospira weilii | Leptospira wolbachii 113817001 | Leptospira wolbachii | Leptotrichia buccalis 85744006 | Leptotrichia buccalis | Leptotrichia goodfellowii 433192002 | Leptotrichia goodfellowii | Leptotrichia hofstadii 432196009 | Leptotrichia hofstadii | Leptotrichia shahii 431792004 | Leptotrichia shahii | Leptotrichia sp. 131328008 | Leptotrichia species | Leptotrichia trevisanii 431794003 | Leptotrichia trevisanii | Leptotrichia wadei 433194001 | Leptotrichia wadei | Leuconostoc Citreum 113821008 | Leuconostoc citreum | LEUCONOSTOC LACTIS 70285009 | Leuconostoc lactis | Leuconostoc mesenteriodes dextranicum 86938009 | Leuconostoc mesenteroides dextranicum | Leuconostoc mesenteroides 71403009 | Leuconostoc mesenteroides | LEUCONOSTOC MESENTEROIDES CREMORIS 35041008 | Leuconostoc mesenteroides cremoris | Leuconostoc mesenteroides mesenteroides 67140002 | Leuconostoc mesenteroides mesenteroides | Leuconostoc pseudomesenteroides 243235006 | Leuconostoc pseudomesenteroides | Leuconostoc species 131329000 | Leuconostoc species | Leuconostocaceae 417156006 | Leuconostocaceae | Listeria grayi 67816007 | Listeria grayi | Listeria innocua 48331004 | Listeria innocua | Listeria ivanovii 55032007 | Listeria ivanovii | Listeria ivanovii subspecies ivanovii 433053006 | Listeria ivanovii subspecies ivanovii | Listeria ivanovii subspecies londoniensis 243284003 | Listeria ivanovii londoniensis | Listeria monocytogenes 36094007 | Listeria monocytogenes | Listeria seeligeri 43091008 | Listeria seeligeri | Listeria species 131330005 | Listeria species | Listeria welshimeri 80757000 | Listeria welshimeri | Listeriaceae 414208001 | Listeriaceae | Listonella anguillarum 427593005 | Listonella anguillarum | Listonella species 131304006 | Listonella species | Lucillia cuprina 46115009 | Lucilia cuprina | Lymphocytic Choriomeningitis 82518003 | Lymphocytic choriomeningitis virus | Lyssavirus 112368004 | Genus Lyssavirus | Macracanthorhynchus hirudinaceus 82926002 | Macracanthorhynchus hirudinaceus | Macrococcus species 414638001 | Macrococcus species | Madurella grisea 82871006 | Madurella grisea | Madurella mycetomatis 24876009 | Madurella mycetomatis | Madurella sp. 23009007 | Madurella | Maggot 8181006 | Maggot | MALASSEZIA FURFUR 29619007 | Malassezia furfur | Malassezia pachydermatis 51257000 | Malassezia pachydermatis | Malbranchea sp. 87186007 | Malbranchea | Mannheimia haemolytica 128385005 | Mannheimia haemolytica | Mannheimia species 128382008 | Mannheimia species | Mansonella ozzardi 69560009 | Mansonella ozzardi | Mansonella perstans 243669003 | Mansonella perstans | Mansonella species 363771000 | Mansonella species | Mansonella streptocerca 243668006 | Mansonella streptocerca | Marburg Virus 422839008 | Lake Victoria marburgvirus | Megasphaera elsdenii 26044001 | Megasphaera elsdenii | Megasphaera species 131334001 | Megasphaera species | Metagonimus yokogawai 77378006 | Metagonimus yokogawai | Metarhizium anisopliae 116446007 | Metarhizium anisopliae | Metarhizium species 116444005 | Metarhizium species | Methicillin resistant Staphylococcus aureus 115329001 | Methicillin resistant Staphylococcus aureus | Methylobacteriaceae 414209009 | Methylobacteriaceae | Methylobacterium extorquens 74005008 | Methylobacterium extorquens | METHYLOBACTERIUM MESOPHILICUM 103486003 | Methylobacterium mesophilicum | Methylobacterium species 116476000 | Methylobacterium species | Methylococcaceae 115075001 | Methylococcaceae | Microascaceae 426381006 | Microascaceae | Microbacteriaceae 385499003 | Microbacteriaceae | Microbacterium arborescens 414699006 | Microbacterium arborescens | Microbacterium aurum 114201005 | Microbacterium aurum | Microbacterium barkeri 114059007 | Microbacterium barkeri | Microbacterium dextranolyticum 114202003 | Microbacterium dextranolyticum | Microbacterium imperiale 114203008 | Microbacterium imperiale | Microbacterium lacticum 114204002 | Microbacterium lacticum | Microbacterium laevaniformans 114205001 | Microbacterium laevaniformans | Microbacterium liquefaciens 114063000 | Microbacterium liquefaciens | Microbacterium oxydans 414713001 | Microbacterium oxydans | Microbacterium paraoxydans 414714007 | Microbacterium paraoxydans | Microbacterium saperdae 426662005 | Microbacterium saperdae | Micrococcus antarcticus 416555005 | Micrococcus antarcticus | MICROCOCCUS LUTEUS 48299003 | Micrococcus luteus | Micrococcus lylae 61376003 | Micrococcus lylae | Micrococcus species 116486004 | Micrococcus species | Microsporidia 418382009 | Phylum Microsporidia | Microsporum audouinii 68952008 | Microsporum audouinii | MICROSPORUM CANIS 19018004 | Microsporum canis | Microsporum canis var. distortum 116002005 | Microsporum canis var. distortum | Microsporum cookei 61799001 | Microsporum cookeii |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Microsporum equinum 71407005 | Microsporum equinum | Microsporum ferrugineum 20282005 | Microsporum ferrugineum | MICROSPORUM FULVUM 38383008 | Microsporum fulvum | Microsporum gallinae 13862003 | Microsporum gallinae | MICROSPORUM GYPSEUM 112404001 | Microsporum gypseum | Microsporum nanum 4488001 | Microsporum nanum | Microsporum persicolor 63368008 | Microsporum persicolor | Microsporum species 116000002 | Microsporum species | Microsporum vanbreuseghemii 53325009 | Microsporum vanbreuseghemii | Mite 84073006 | Mite | Mobiluncus curtisii 30224004 | Mobiluncus curtisii | Mobiluncus mulieris 13716002 | Mobiluncus mulieris | Mobiluncus sp. 131335000 | Mobiluncus species | Moellerella species 131272008 | Moellerella species | Moellerella wisconsensis 37107002 | Moellerella wisconsensis | Mogibacterium neglectum 429899006 | Mogibacterium neglectum | Mogibacterium timidum 417280000 | Mogibacterium timidum | Mogibacterium vescum 416225002 | Mogibacterium vescum | Moluscum Contagiosum 68855006 | Molluscum contagiosum virus | Moniliformis moniliformis 62642000 | Moniliformis moniliformis | Monocillium sp. 415937001 | Monocillium species | Moraxella atlantae 47491001 | Moraxella atlantae | Moraxella boevrei 113832008 | Moraxella boevrei | Moraxella bovis 19425003 | Moraxella bovis | Moraxella canis 113833003 | Moraxella canis | Moraxella caprae 113834009 | Moraxella caprae | MORAXELLA CATARRHALIS 24226003 | Moraxella catarrhalis | Moraxella caviae 2934002 | Moraxella caviae | Moraxella cuniculi 46450008 | Moraxella cuniculi | Moraxella lacunata 84066001 | Moraxella lacunata | Moraxella lincolnii 113836006 | Moraxella lincolnii | Moraxella nonliquefaciens 46455003 | Moraxella nonliquefaciens | Moraxella oblonga 430486003 | Moraxella oblonga | Moraxella osloensis 72401008 | Moraxella osloensis | Moraxella ovis 112332009 | Moraxella ovis | Moraxella species 131337008 | Moraxella species | Moraxellaceae 427501004 | Moraxellaceae | MORGANELLA MORGANII 243301005 | Morganella morganii | Morganella morganii ssp morganii 243302003 | Morganella morganii subsp morganii | Morganella morganii ssp sibonii 243303008 | Morganella morganii subsp sibonii | Morganella species 372316007 | Morganella species | Morococcus species 131338003 | Morococcus species | Mortierella sp 61016004 | Mortierella | Mortierella wolfii 63197001 | Mortierella wolfii | Mucor circinelloides 67625003 | Mucor circinelloides | Mucor racemosus 29589005 | Mucor racemosus | Mucor ramosissimus 79297004 | Mucor ramosissimus | Mucor species 372317003 | Mucor species | Mucoraceae 427140002 | Mucoraceae | Mumps Virus 50384007 | Mumps virus | Murray Valley Encephalitis 31989009 | Murray Valley encephalitis virus | Mycelia sterilia 243555008 | Mycelia sterilia | Mycobacteriaceae 115108002 | Mycobacteriaceae | Mycobacterium abscessus 113838007 | Mycobacterium abscessus | Mycobacterium africanum 51320008 | Mycobacterium africanum | Mycobacterium agri 29111009 | Mycobacterium agri | Mycobacterium aichiense 66940008 | Mycobacterium aichiense | Mycobacterium arupense 432820006 | Mycobacterium arupense | Mycobacterium asiaticum 44760001 | Mycobacterium asiaticum | Mycobacterium atypical group 110379001 | Mycobacterium, non-TB | Mycobacterium aurum 48134004 | Mycobacterium aurum | Mycobacterium austroafricanum 27365009 | Mycobacterium austroafricanum | Mycobacterium avium 83723009 | Mycobacterium avium | Mycobacterium avium brunese 243376004 | Mycobacterium avium brunese | Mycobacterium avium Complex X var 58503001 | Mycobacterium, avium-intracellulare group | Mycobacterium bovis 27142009 | Mycobacterium bovis | Mycobacterium bovis var B.C.G. 33610009 | Attenuated Mycobacterium bovis | Mycobacterium branderi 113843000 | Mycobacterium branderi | Mycobacterium canetti 414789006 | Mycobacterium canetti | Mycobacterium celatum 103475000 | Mycobacterium celatum | Mycobacterium chelonae 243377008 | Mycobacterium chelonae | Mycobacterium chimaera 431504009 | Mycobacterium chimaera | Mycobacterium chitae 89896008 | Mycobacterium chitae | Mycobacterium chubuense 20498000 | Mycobacterium chubuense | Mycobacterium conspicuum 113846008 | Mycobacterium conspicuum | Mycobacterium cosmeticum 430580007 | Mycobacterium cosmeticum | Mycobacterium doricum 430581006 | Mycobacterium doricum | Mycobacterium duvalii 66838002 | Mycobacterium duvalii | Mycobacterium elephantis 385509008 | Mycobacterium elephantis | Mycobacterium fallax 9939008 | Mycobacterium fallax | Mycobacterium flavescens 5885000 | Mycobacterium flavescens | MYCOBACTERIUM FORTUITUM 243378003 | Mycobacterium fortuitum | Mycobacterium fortuitum biovar fortuitum 8584005 | Mycobacterium fortuitum biovar. fortuitum | Mycobacterium fortuitum complex 103474001 | Mycobacterium fortuitum complex | Mycobacterium gadium 74917007 | Mycobacterium gadium |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Mycobacterium gastri 70463000 | Mycobacterium gastri | Mycobacterium genavense 103476004 | Mycobacterium genavense | Mycobacterium gilvum 24618002 | Mycobacterium gilvum | Mycobacterium goodii 127522008 | Mycobacterium goodii | Mycobacterium haemophilum 21996001 | Mycobacterium haemophilum | Mycobacterium hassiacum 113848009 | Mycobacterium hassiacum | Mycobacterium heckeshornense 429919006 | Mycobacterium heckeshornense | Mycobacterium heidelbergense 429920000 | Mycobacterium heidelbergense | Mycobacterium hiberniae 113849001 | Mycobacterium hiberniae | Mycobacterium immunogenum 428319005 | Mycobacterium immunogenum | Mycobacterium interjectum 113851002 | Mycobacterium interjectum | Mycobacterium intermedium 113852009 | Mycobacterium intermedium | Mycobacterium intracellulare 83841006 | Mycobacterium intracellulare | Mycobacterium kansasii 1507005 | Mycobacterium kansasii | Mycobacterium komossense 36249008 | Mycobacterium komossence | Mycobacterium kubicae 427768005 | Mycobacterium kubicae | Mycobacterium lentiflavum 113853004 | Mycobacterium lentiflavum | Mycobacterium leprae 58242002 | Mycobacterium leprae | Mycobacterium malmoense 73576007 | Mycobacterium malmoense | Mycobacterium marinum 58869008 | Mycobacterium marinum | Mycobacterium microti 70801007 | Mycobacterium microti | Mycobacterium moriokaense 9679001 | Mycobacterium moriokaense | MYCOBACTERIUM MUCOGENICUM 113856007 | Mycobacterium mucogenicum | Mycobacterium nebraskense 422214005 | Mycobacterium nebraskense | Mycobacterium neoaurum 51459000 | Mycobacterium neoaurum | Mycobacterium nonchromogenicum 21433000 | Mycobacterium nonchromogenicum | Mycobacterium obuense 41304005 | Mycobacterium obuense | Mycobacterium palustre 430912004 | Mycobacterium palustre | Mycobacterium paraffinicum 20141004 | Mycobacterium scrofulaceum | Mycobacterium parafortuitum 909007 | Mycobacterium parafortuitum | Mycobacterium peregrinum 113859000 | Mycobacterium peregrinum | Mycobacterium phlei 78112006 | Mycobacterium phlei | Mycobacterium porcinum 91336002 | Mycobacterium porcinum | Mycobacterium poriferae 58768005 | Mycobacterium poriferae | Mycobacterium pulveris 62644004 | Mycobacterium pulveris | Mycobacterium ratisbonense 429903004 | Mycobacterium ratisbonense | Mycobacterium rhodesiae 72130005 | Mycobacterium rhodesiae | Mycobacterium septicum 385508000 | Mycobacterium septicum | Mycobacterium shimoidei 79817008 | Mycobacterium shimoidei | Mycobacterium simiae 84180005 | Mycobacterium simiae | MYCOBACTERIUM SMEGMATIS 53114006 | Mycobacterium smegmatis | Mycobacterium sp. Rapid Grower 415239006 | Rapid growing Mycobacterium species not Mycobacterium fortuitum complex | Mycobacterium sp. Slow Grower 415533006 | Slow growing mycobacteria | Mycobacterium species 131339006 | Mycobacterium species | Mycobacterium sphagni 78444002 | Mycobacterium sphagni | Mycobacterium szulgai 65613000 | Mycobacterium szulgai | Mycobacterium terrae 45662006 | Mycobacterium terrae | Mycobacterium tokaiense 72477006 | Mycobacterium tokaiense | Mycobacterium triplex 113860005 | Mycobacterium triplex | Mycobacterium triviale 40333002 | Mycobacterium triviale | Mycobacterium tuberculosis 113861009 | Mycobacterium tuberculosis | Mycobacterium tuberculosis complex 113858008 | Mycobacterium tuberculosis complex | Mycobacterium Tuberculosis hominis 36354002 | Mycobacterium tuberculosis hominis | Mycobacterium ulcerans 40713003 | Mycobacterium ulcerans | Mycobacterium vaccae 54925005 | Mycobacterium vaccae | Mycobacterium wolinskyi 127523003 | Mycobacterium wolinskyi | Mycobacterium xenopi 58663006 | Mycobacterium xenopi | Mycoplasma faucium 76010005 | Mycoplasma faucium | Mycoplasma fermentans 88263009 | Mycoplasma fermentans | Mycoplasma genitalis 5056007 | Mycoplasma genitalium | MYCOPLASMA HOMINIS 1290001 | Mycoplasma hominis | Mycoplasma hyorhinis 9303008 | Mycoplasma hyorhinis | Mycoplasma lipophilum 11412008 | Mycoplasma lipophilum | Mycoplasma neurolyticum 12806008 | Mycoplasma neurolyticum | Mycoplasma orale 46705005 | Mycoplasma orale | Mycoplasma penetrans 113884002 | Mycoplasma penetrans | Mycoplasma pirum 81314002 | Mycoplasma pirum | Mycoplasma pneumoniae 58720004 | Mycoplasma pneumoniae | Mycoplasma primatum 112337003 | Mycoplasma primatum | Mycoplasma salivarium 2654003 | Mycoplasma salivarium | Mycoplasma sp. 78981005 | Genus Mycoplasma | Mycoplasma species 116487008 | Mycoplasma species | Mycoplasma spermatophilum 113890003 | Mycoplasma spermatophilum | Mycoplasmataceae 115109005 | Mycoplasmataceae | Myriodontium keratinophilum 74988009 | Myriodontium keratinophylum | Myroides (Flavobacterium) odoratus/odoratimimus 113557006 | Myroides odoratimimus | Myroides odoratus 113558001 | Myroides odoratus | Myroides species 131237005 | Myroides species | Naegleria fowleri 20942007 | Naegleria fowleri | Naegleria sp. 18441007 | Naegleria | Nannizzia cajetani 76608007 | Arthroderma cajetani | Necator americanus 43905006 | Necator americanus | Neisseria animaloris/zoodegmatis 442202005 | Neisseria animaloris | Neisseria canis 54978009 | Neisseria canis | Neisseria cinerea 69312007 | Neisseria cinerea |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Neisseria denitrificans 63863005 | Neisseria denitrificans | Neisseria dentiae 113896009 | Neisseria dentiae | NEISSERIA ELONGATA 12638001 | Neisseria elongata | Neisseria flavescens 75566007 | Neisseria flavescens | NEISSERIA GONORRHOEAE 68704007 | Neisseria gonorrhoeae | Neisseria iguanae 113897000 | Neisseria iguanae | NEISSERIA LACTAMICA 54915000 | Neisseria lactamica | Neisseria macacae 112341004 | Neisseria macacae | Neisseria meningitidis 17872004 | Neisseria meningitidis | NEISSERIA MENINGITIDIS GROUP A 103479006 | Neisseria meningitidis serogroup A | NEISSERIA MENINGITIDIS GROUP B 103480009 | Neisseria meningitidis serogroup B | NEISSERIA MENINGITIDIS GROUP C 103481008 | Neisseria meningitidis serogroup C | Neisseria meningitidis group D 443023002 | Neisseria meningitidis serogroup D | Neisseria meningitidis group W135 103483006 | Neisseria meningitidis W135 | Neisseria meningitidis group X 125041003 | Neisseria meningitidis serogroup X | NEISSERIA MENINGITIDIS GROUP Y 103482001 | Neisseria meningitidis group Y | NEISSERIA MENINGITIDIS GROUP Z 125042005 | Neisseria meningitidis serogroup Z | Neisseria meningitidis non-typeable 414810006 | Neisseria meningitidis non-typable | Neisseria mucosa 81795000 | Neisseria mucosa | Neisseria parelongata 113894007 | Neisseria weaveri | Neisseria polysaccharea 66768001 | Neisseria polysaccharea | NEISSERIA SICCA 49074002 | Neisseria sicca | Neisseria species 131340008 | Neisseria species | NEISSERIA SUBFLAVA 77700001 | Neisseria subflava | Neisseria subflava biovar flava 414812003 | Neisseria subflava biovar flava | Neisseria subflava biovar perflava 414813008 | Neisseria subflava biovar perflava | Neisseriaceae 115072003 | Neisseriaceae | Nipah virus 115511007 | Nipah virus | Nocardia abscessus 414863003 | Nocardia abscessus | Nocardia africana 417342004 | Nocardia africana | NOCARDIA ASTEROIDES 30092002 | Nocardia asteroides | Nocardia asteroides complex 414864009 | Nocardia asteroides complex | NOCARDIA BEIJINGENSIS 430848001 | Nocardia beijingensis | NOCARDIA BRASILIENSIS 58970008 | Nocardia brasiliensis | NOCARDIA BREVICATENA 70366009 | Nocardia brevicatena | Nocardia brevicatena complex 131342000 | Nocardia brevicatena complex | Nocardia carnea 61208001 | Nocardia carnea | Nocardia cyriacigeorgica 414866006 | Nocardia cyriacigeorgica | NOCARDIA FARCINICA 85516007 | Nocardia farcinica | Nocardia flavorosea 430652004 | Nocardia flavorosea | NOCARDIA NOVA 37621001 | Nocardia nova | NOCARDIA OTITIDISCAVIARUM 63087008 | Nocardia otitidis caviarum | NOCARDIA PAUCIVORANS 414867002 | Nocardia paucivorans | Nocardia pseudobrasiliensis 414868007 | Nocardia pseudobrasiliensis | Nocardia species 127524009 | Nocardia species | NOCARDIA TRANSVALENSIS 80379008 | Nocardia transvalensis | Nocardia veterana 414869004 | Nocardia veterana | Nocardiaceae 409836008 | Nocardiaceae | Nocardioides species 131392004 | Nocardioides species | Nocardiopsaceae 425792001 | Nocardiopsaceae | Nocardiopsis dassonvillei 15526005 | Nocardiopsis dassonvillei | Nocardiopsis sp. 131343005 | Nocardiopsis species | Nonfermenting Gram-Negative Bac. (asaccharolytic) 243328000 | Non-fermentative Gram-negative bacillus | Nonfermenting Gram-Negative Bac.(Saccharolytic) 243312005 | Fermentative Gram-negative bacillus | Non-haemolytic Streptococcus 22339002 | Gamma-haemolytic streptococcus | Norwalk Agent 10514003 | Norwalk virus | Obesumbacterium proteus 28501001 | Obesumbacterium proteus | Obesumbacterium species 131274009 | Obesumbacterium species | Oceanospirillaceae 417064003 | Oceanospirillaceae | Ochrobactrum anthropi 116490002 | Ochrobactrum anthropi | Ochrobactrum intermedium 414926008 | Ochrobactrum intermedium | Ochrobactrum species 116489006 | Ochrobactrum species | Ochroconis constricta 116451001 | Ochroconis constricta | Ochroconis gallopavum 116453003 | Ochroconis gallopava | Ochroconis species 116452008 | Ochroconis species | Oerskovia species 113900007 | Oerskovia species | Oerskovia turbata 10459009 | Oerskovia turbata | Oligella species 131344004 | Oligella species | Oligella ureolytica 11309009 | Oligella ureolytica | Oligella urethralis 90341001 | Oligella urethralis | Olsenella uli 433487008 | Olsenella uli | Onchocerca volvulus 52397001 | Onchocerca volvulus | Onychocola canadensis 116449000 | Onychocola canadensis | Onychocola species 116448008 | Onychocola species | Onygenales 414964005 | Onygenales | Ophiostomataceae 425660008 | Ophiostomataceae | Opisthorchis felineus 1846000 | Opisthorchis felineus | Opisthorchis species 419799003 | Opisthorchis species | Opisthorchis viverrini 71650008 | Opisthorchis viverrini | Orf Virus 64753004 | Orf virus | Orientia species 131423003 | Orientia species | Orthopoxvirus 29724001 | Orthopoxvirus | Oscillospiraceae 417379001 | Oscillospiraceae | Oxalobacteraceae 409855008 | Oxalobacteraceae | Paecilomyces lilacinus 243514005 | Paecilomyces lilacinus |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING PAECILOMYCES MARQUANDII 88336005 | Paecilomyces marquandii | Paecilomyces species 372326000 | Paecilomyces species | Paecilomyces variotii 20035009 | Paecilomyces variotii | PAECILOMYCES VIRIDIS 243515006 | Paecilomyces viridis | Paenibacillaceae 414213002 | Paenibacillaceae | Paenibacillus (Bacillus) alvei 114088008 | Paenibacillus alvei | Paenibacillus (Bacillus) amylolyticus 114089000 | Paenibacillus amylolyticus | Paenibacillus (Bacillus) thiaminolyticus 114106008 | Paenibacillus thiaminolyticus | Paenibacillus larvae 114098002 | Paenibacillus larvae | Paenibacillus popilliae 414990008 | Paenibacillus popilliae | Paenibacillus species 127542004 | Paenibacillus species | Paenibacillus validus 114107004 | Paenibacillus validus | Pandoraea apista 414999009 | Pandoraea apista | Pandoraea norimbergensis 415000009 | Pandoraea norimbergensis | Pandoraea pnomenusa 415001008 | Pandoraea pnomenusa | Pandoraea pulmonicola 415002001 | Pandoraea pulmonicola | Pandoraea species 415003006 | Pandoraea species | Pandoraea sputorum 415004000 | Pandoraea sputorum | Pantoea agglomerans 115015008 | Pantoea agglomerans | Pantoea ananatis 115014007 | Pantoea ananatis | Pantoea dispersa 115017000 | Pantoea dispersa | Pantoea sp. 115013001 | Panteoa | Papillomaviridae 407453000 | Family Papillomaviridae | Papillomavirus 243584004 | Genus Papillomavirus | Paracoccidioides brasiliensis 61449004 | Paracoccidioides brasiliensis | Paragonimus mexicanus 17218004 | Paragonimus mexicanus | Paragonimus westermani 58412002 | Paragonimus westermanii | Parainfluenza 1 407489008 | Human parainfluenza virus 1 | Parainfluenza 2 407491000 | Human parainfluenza virus 2 | Parainfluenza 3 407493002 | Human parainfluenza virus 3 | Parainfluenza 4 89117003 | Human parainfluenza virus 4 | Paramyxoviridae 128354001 | Paramyxoviridae | Parapoxvirus 70275008 | Parapoxvirus | Parasarcophaga sp. 372344008 | Sarcophaga species | Parvimonas micra 434293007 | Parvimonas micra | Parvoviridae 243587006 | Family Parvoviridae | Parvovirus 11970002 | Genus Parvovirus | Parvovirus B19 63603005 | B19 virus | Parvovirus RA-1 12396006 | Rheumatoid arthritis virus | PASTEURELLA AEROGENES 87075007 | Pasteurella aerogenes | Pasteurella avium 429411001 | Avibacterium avium | Pasteurella bettyae 113902004 | Pasteurella bettyae | Pasteurella canis 7784009 | Pasteurella canis | Pasteurella dagmatis 80948000 | Pasteurella dagmatis | Pasteurella haemolytica/trehalosi 434147000 | Bibersteinia trehalosi | Pasteurella multocida 10879005 | Pasteurella multocida | Pasteurella pneumotropica 32562008 | Pasteurella pneumotropica | Pasteurella species 131346002 | Pasteurella species | Pasteurella stomatis 46827009 | Pasteurella stomatis | Pediculus humanus capitus 29568001 | Pediculus humanus capitis | Pediculus humanus humanus 84936006 | Pediculus humanus | Pediococcus acidilactici 243237003 | Pediococcus acidilactici | Pediococcus damnosus 243238008 | Pediococcus damnosus | Pediococcus dextrinicus 243239000 | Pediococcus dextrinicus | Pediococcus parvulus 243241004 | Pediococcus parvulus | PEDIOCOCCUS PENTOSACEUS 243242006 | Pediococcus pentosaceus | PEDIOCOCCUS SP. 419110005 | Pediococcus species | Pedobacter heparinus 113554004 | Pedobacter heparinus | Pedobacter piscium 113555003 | Pedobacter piscium | Pedobacter species 131236001 | Pedobacter species | Penicillium glabrum 5516003 | Penicillium glaucum | Penicillium marneffei 71825007 | Penicillium marneffei | Penicillium species 372329007 | Penicillium species | PENICILLIUM VERRUCULOSUM 82397008 | Penicillium verruculosum | Peptococcaceae 426458005 | Peptococcaceae | Peptococcus niger 112344007 | Peptococcus niger | Peptococcus sp. 20585006 | Peptococcus | Peptoniphilus (Peptostrept.) asaccharolyticus 433440001 | Peptoniphilus asaccharolyticus | Peptoniphilus harei 433373007 | Peptoniphilus harei | Peptoniphilus indolicus 433374001 | Peptoniphilus indolicus | Peptoniphilus ivorii 433375000 | Peptoniphilus ivorii | Peptoniphilus lacrimalis 433376004 | Peptoniphilus lacrimalis | Peptostreptococcaceae 414215009 | Family Peptostreptococcaceae | PEPTOSTREPTOCOCCUS ANAEROBIUS 19217002 | Peptostreptococcus anaerobius | PEPTOSTREPTOCOCCUS ASACCHAROLYTICUS 89268006 | Peptostreptococcus asaccharolyticus | PEPTOSTREPTOCOCCUS INDOLICUS 19204000 | Peptostreptococcus indolicus | PEPTOSTREPTOCOCCUS MAGNUS 417469002 | Finegoldia magna | PEPTOSTREPTOCOCCUS MICROS 62890009 | Peptostreptococcus micros | Peptostreptococcus parvulus 113631003 | Atopobium parvulum | Peptostreptococcus productus 113946007 | Ruminococcus productus | Peptostreptococcus saccharolyticus 302585007 | Peptostreptococcus saccharolyticus | Peptostreptococcus sp. 243417000 | Peptostreptococcus | Peptostreptococcus species 116491003 | Peptostreptococcus species | PEPTOSTREPTOCOCCUS TETRADIUS 413524006 | Anaerococcus tretradius | Pestalotia sp. 424485000 | Pestalotiopsis |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Phaeoacremonium parasiticum 415950000 | Phaeoacremonium parasiticum | Phaeoacremonium sp 415952008 | Phaeoacremonium species | Phaeococcomyces exophialae 51929003 | Phaeococcomyces exophialae | Phaeococcomyces sp. 86327004 | Phaeococcomyces | PHIALOPHORA VERRUCOSA 67301003 | Phialophora verrucosa | Phoma sp. 61019006 | Phoma | PHOTOBACTERIUM DAMSELAE 387798006 | Photobacterium damselae | Photobacterium species 131305007 | Photobacterium species | Photorhabdus asymbiotica 415093002 | Photorhabdus asymbiotica | PHOTORHABDUS LUMINESCENS 115023005 | Photorhabdus luminescens | Photorhabdus temperata 415094008 | Photorhabdus temperata | Phthirus pubis 45776000 | Phthirus pubis | Pichia anomala 427041001 | Pichia anomala | Pichia farinosa 243433002 | Pichia farinosa | PICHIA OHMERI 447491002 | Kodamaea ohmeri | Picornaviridae 407344006 | Family Picornaviridae | Picornavirus 407345007 | Genus Picornavirus | Piedraiaceae 427699001 | Piedraiaceae | Pithomyces chartarum 75806004 | Pithomyces chartarum | Plasmodium falciparum 30020004 | Plasmodium falciparum | Plasmodium knowlesi 49918008 | Plasmodium knowlesi | Plasmodium malariae 56395006 | Plasmodium malariae | Plasmodium ovale 18508006 | Plasmodium ovale | Plasmodium species 372332005 | Plasmodium species | Plasmodium vivax 74746009 | Plasmodium vivax | Pleosporaceae 426523006 | Pleosporaceae | Plesiomonas shigelloides 38643006 | Plesiomonas shigelloides | Plesiomonas species 131347006 | Plesiomonas species | Pneumocystidaceae 414218006 | Pneumocystidaceae | Pneumocystis jiroveci (carinii) 79909001 | Pneumocystis jiroveci | Poliovirus 44172002 | Human poliovirus | Poliovirus type 1 22580008 | Human poliovirus 1 | Poliovirus type 2 55174004 | Human poliovirus 2 | Poliovirus type 3 16362001 | Human poliovirus 3 | Polyomaviridae 407455007 | Family Polyomaviridae | Polyomavirus 407456008 | Genus Polyomavirus | Porphyromonadaceae 409810001 | Porphyromonadaceae | Porphyromonas asacharolytica 433018004 | Porphyromonas asaccharolytica | Porphyromonas cangingivalis 114156003 | Porphyromonas cangingivalis | Porphyromonas canoris 114157007 | Porphyromonas canoris | Porphyromonas cansulci 114158002 | Porphyromonas cansulci | Porphyromonas catoniae 114159005 | Porphyromonas catoniae | Porphyromonas circumdentaria 114160000 | Porphyromonas circumentaria | Porphyromonas crevioricanis 114161001 | Porphyromonas crevioricanis | Porphyromonas endodontalis 2401005 | Porphyromonas endodontalis | Porphyromonas gingivicanis 114164009 | Porphyromonas gingivicanis | Porphyromonas gulae 433019007 | Porphyromonas gulae | Porphyromonas macacae 114166006 | Porphyromonas macacae | PORPHYROMONAS SP. 131398000 | Porphyromonas species | Poxvirus 424976006 | Poxviridae | Pragia fontium 115025003 | Pragia fontium | Pragia species 131306008 | Pragia species | Prevotella bivia 114131009 | Prevotella bivia | PREVOTELLA BUCCAE 114134001 | Prevotella buccae | Prevotella buccalis 114135000 | Prevotella buccalis | PREVOTELLA CORPORIS 114136004 | Prevotella corporis | Prevotella dentalis 114137008 | Prevotella dentalis | Prevotella denticola 114138003 | Prevotella denticola | PREVOTELLA DISIENS 114139006 | Prevotella disiens | Prevotella enoeca 114140008 | Prevotella enoeca | Prevotella heparinolytica 114141007 | Prevotella heparinolytica | PREVOTELLA INTERMEDIA 114142000 | Prevotella intermedia | Prevotella loescheii 114143005 | Prevotella loescheii | Prevotella marshii 417919003 | Prevotella marshii | Prevotella melaninogenica 114144004 | Prevotella melaninogenica | Prevotella multiformis 418615005 | Prevotella multiformis | Prevotella multisaccharivorax 418858007 | Prevotella multisaccharivorax | Prevotella nigrescens 114145003 | Prevotella nigrescens | Prevotella oralis 114146002 | Prevotella oralis | PREVOTELLA ORIS 114147006 | Prevotella oris | Prevotella oulora 419466004 | Prevotella oulorum | Prevotella pallens 114149009 | Prevotella pallens | Prevotella ruminicola 115949003 | Prevotella ruminicola | Prevotella salivae 418278009 | Prevotella salivae | Prevotella shahii 419720005 | Prevotella shahii | Prevotella species 131397005 | Prevotella species | Prevotella tannerae 114151008 | Prevotella tannerae | Prevotella zoogleoformans 425729002 | Bacteroides zoogleoformans | Promicromonosporaceae 409859002 | Promicromonosporaceae | Propionibacteriaceae 414219003 | Propionibacteriaceae | PROPIONIBACTERIUM ACNES 39473003 | Propionibacterium acnes | PROPIONIBACTERIUM AVIDUM 47473006 | Propionibacterium avidum | PROPIONIBACTERIUM GRANULOSUM 87755005 | Propionibacterium granulosum | Propionibacterium propionicum 427413007 | Propionibacterium propionicum | PROPIONIBACTERIUM SP. 131348001 | Propionibacterium species |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Proteus hauseri 417592004 | Proteus hauseri | PROTEUS MIRABILIS 73457008 | Proteus mirabilis | Proteus myxofaciens 86145008 | Proteus myxofaciens | PROTEUS PENNERI 45298005 | Proteus penneri | Proteus species 131275005 | Proteus species | PROTEUS VULGARIS 45834001 | Proteus vulgaris | Prototheca sp. 37563009 | Prototheca | PROTOTHECA WICKERHAMII 70523003 | Prototheca wickerhamii | Prototheca zopfii 32768009 | Prototheca zopfii | Providencia alcalifaciens 46349009 | Providencia alcalifaciens | PROVIDENCIA RETTGERI 14196002 | Providencia rettgeri | Providencia rustigianii 19196004 | Providencia rustigianii | Providencia sp. 131276006 | Providencia species | PROVIDENCIA STUARTII 1445008 | Providencia stuartii | PSEUDALLESCHERIA BOYDII 91088000 | Pseudallescheria boydii | Pseudallescheria species 372335007 | Pseudallescheria species | PSEUDOMONAS AERUGINOSA 52499004 | Pseudomonas aeruginosa | PSEUDOMONAS ALCALIGENES 46247008 | Pseudomonas alcaligenes | Pseudomonas aureofaciens 63949003 | Pseudomonas chlororaphis | PSEUDOMONAS FLUORESCENS 39289003 | Pseudomonas fluorescens | Pseudomonas marginalis 116414007 | Pseudomonas marginalis | PSEUDOMONAS MENDOCINA 59419001 | Pseudomonas mendocina | Pseudomonas monteilii 113930004 | Pseudomonas monteilii | Pseudomonas mosselii 437937006 | Pseudomonas mosselii | Pseudomonas pertucinogena 17191002 | Pseudomonas pertucinogena | Pseudomonas pseudoalcaligenes 30955004 | Pseudomonas pseudoalcaligenes | PSEUDOMONAS PUTIDA 68608003 | Pseudomonas putida | Pseudomonas sp. 57032008 | Pseudomonas | Pseudomonas species 116493000 | Pseudomonas species | PSEUDOMONAS STUTZERI 58024003 | Pseudomonas stutzeri | Pseudomonas syringae 36717009 | Pseudomonas syringae | Pseudomonas veronii 113940001 | Pseudomonas veronii | Pseudonocardia autotrophica 113656009 | Pseudonocardia autotrophica | Pseudonocardia sp. 131267004 | Pseudonocardia species | Pseudonocardiaceae 409839001 | Pseudonocardiaceae | Pseudoramibacter species 131332002 | Pseudoramibacter species | Psychrobacter (Moraxella) phenylpyruvicus 113941002 | Psychrobacter phenylpyruvicus | Psychrobacter faecalis 432699001 | Psychrobacter faecalis | Psychrobacter immobilis 70465007 | Psychrobacter immobilis | Psychrobacter species 131349009 | Psychrobacter species | Pythium insidiosum 57313005 | Pythium insidiosum | Rabies virus 59881000 | Rabies virus | Rahnella aquatilis 10021006 | Rahnella aquatilis | Ralstonia (Burkholderia) pickettii bio.1 114053008 | Ralstonia picketti | Ralstonia (Burkholderia) thomasii 415236004 | Ralstonia mannitolilytica | Ralstonia eutropha 415835005 | Wautersia eutropha | Ralstonia paucula 116198003 | Ralstonia paucula | Ralstonia solanacearum 114054002 | Ralstonia solanacearum | Ralstonia species 116199006 | Ralstonia species | RAMICHLORIDIUM SCHULZERI 76161003 | Ramichloridium schulzeri | Raoultella planticola 416264004 | Raoultella planticola | Reoviridae 243590000 | Family Reoviridae | Reovirus 243591001 | Orthoreovirus | Respiratory Syncytial virus 6415009 | Human respiratory syncytial virus | Retortomonas intestinalis 87569007 | Retortamonas intestinalis | Retrovirus 77622001 | Family Retroviridae | Rhabdovirus 407327007 | Genus Rhabdovirus | Rhinocladiella aquaspersa 45462000 | Rhinocladiella aquaspersa | RHINOCLADIELLA ATROVIRENS 243545009 | Rhinocladiella atrovirens | Rhinovirus 90389005 | Genus Rhinovirus | Rhizobiaceae 414220009 | Rhizobiaceae | Rhizobium (Agrobacterium) radiobacter 438107000 | Rhizobium radiobacter | Rhizobium (Agrobacterium) rubi 438073004 | Rhizobium rubi | Rhizobium species 415325009 | Rhizobium species | Rhizoctonia spp 30505003 | Rhizoctonia | Rhizomucor miehei 61389009 | Rhizomucor miehei | RHIZOMUCOR PUSILLUS 70399006 | Rhizomucor pusillus | Rhizomucor sp 85711000 | Rhizomucor | Rhizomucor tauricus 15709001 | Rhizomucor tauricus | Rhizopus homothallicus 44643002 | Rhizopus homothalicus | Rhizopus microsporus 14504004 | Rhizopus microsporus | Rhizopus oryzae 87002009 | Rhizopus arrhizus | Rhizopus sp. 372339001 | Rhizopus species | Rhizopus stolonifer 37060000 | Rhizopus stolonifer | Rhodobacter massiliensis 433974009 | Haematobacter massiliensis | Rhodobacter species 415332000 | Rhodobacter species | Rhodobacteraceae 414221008 | Rhodobacteraceae | Rhodococcus aurantica 113510005 | Tsukamurella paurometabola | Rhodococcus coprophilus 2621000 | Rhodococcus coprophilus | Rhodococcus erythropolis 22478004 | Rhodococcus erythropolis | Rhodococcus fascians 28901005 | Rhodococcus fascians | Rhodococcus globerulus 44348004 | Rhodococcus globerulus | Rhodococcus gordoniae 430885009 | Rhodococcus gordoniae | Rhodococcus marinonascens 46065003 | Rhodococcus marinonascens | Rhodococcus rhodnii 57205006 | Rhodococcus rhodnii |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Rhodococcus rhodochrous 54379008 | Rhodococcus rhodochrous | Rhodococcus ruber 112347000 | Rhodococcus ruber | Rhodococcus species 131350009 | Rhodococcus species | Rhodotorula glutinus 69250004 | Rhodotorula glutinis | Rhodotorula minuta 416777007 | Rhodotorula minuta | Rhodotorula mucilaginosa 86724009 | Rhodotorula rubra | Rhodotorula pilimanae 243470006 | Rhodotorula pilimanae | Rhodotorula sp. 51976007 | Rhodotorula | Rickettsia akari 30769009 | Rickettsia akari | Rickettsia australis 53447008 | Rickettsia australis | Rickettsia conorii 32691002 | Rickettsia conorii | Rickettsia prowazekii 28499009 | Rickettsia prowazekii | Rickettsia rickettsii 18054009 | Rickettsia rickettsii | Rickettsia siberica 85288000 | Rickettsia sibirica | Rickettsia sp. 62065006 | Rickettsia | Rickettsia tsutsugamushi 114233001 | Orientia tsutsugamushi | Rickettsia typhi 79284001 | Rickettsia typhi | Rickettsiaceae 115081009 | Rickettsiaceae | Rickettsias 115178001 | Rickettsiales | Rochalimaea quintana 103511001 | Bartonella quintana | Rochalimaea sp. 62496009 | Bartonella | Roseomonas cervicalis 113711006 | Roseomonas cervicalis | Roseomonas fauriae 113712004 | Roseomonas fauriae | Roseomonas genomospecies 4 444833004 | Roseomonas genomospecies 4 | Roseomonas gilardii 113710007 | Roseomonas gilardii | Roseomonas mucosa 415351006 | Roseomonas mucosa | Roseomonas species 131291008 | Roseomonas species | Ross River virus 32458000 | Ross River virus | Rotavirus 417542000 | Rotavirus | Rothia aeria 417029007 | Rothia aeria | Rothia dentocariosa 35379007 | Rothia dentocariosa | Rothia mucilaginosa 416544005 | Rothia mucilaginosa | Rothia species 415355002 | Rothia species | Rubella 5210005 | Rubella virus | Ruminococcus albus 31711009 | Ruminococcus albus | Ruminococcus bromii 90439003 | Ruminococcus bromii | Ruminococcus callidus 709001 | Ruminococcus callidus | Ruminococcus gnavus 88513000 | Ruminococcus gnavus | Ruminococcus hydrogenotrophicus 113944005 | Ruminococcus hydrogenotrophicus | Ruminococcus species 131353006 | Ruminococcus species | Ruminococcus torques 33171001 | Ruminococcus torques | Saccharomyces cerevisiae 58296003 | Saccharomyces cerevisiae | Saccharomyces sp. 27069008 | Saccharomyces | Saccharomycetales 426013006 | Saccharomycetales | Saccharothrix sp. 131379002 | Saccharothrix species | Saksenaea vasiformis 58478009 | Saksenaea vasiformis | SALMONELLA ABAETETUBA 75848006 | Salmonella Abaetetuba | SALMONELLA ABERDEEN 57322006 | Salmonella Aberdeen | Salmonella Abony 40369005 | Salmonella Abony | Salmonella Abortusovis 83318007 | Salmonella Abortusovis | SALMONELLA ADELAIDE 10343005 | Salmonella Adelaide | Salmonella Agama 60073009 | Salmonella Agama | Salmonella Agbeni 2286000 | Salmonella Agbeni | Salmonella Agodi 48652000 | Salmonella Agodi | SALMONELLA AGONA 80627004 | Salmonella Agona | Salmonella Ahuza 541005 | Salmonella Ahuza | Salmonella Ajiobo 23131001 | Salmonella Ajiobo | Salmonella Alachua 404347008 | Salmonella Alachua | Salmonella Albany 72033009 | Salmonella Albany | Salmonella Alsterdorf subsp II 114741000 | Salmonella II 1,40:g,[m],[s],t:1,5 | Salmonella Altendorf 112286004 | Salmonella Altendorf | Salmonella Altona 47229009 | Salmonella Altona | Salmonella Amager 77822004 | Salmonella Amager | Salmonella Amager var 15+ 114284000 | Salmonella Amager var 15+ | Salmonella Amersfoort 52511000 | Salmonella Amersfoort | Salmonella Amersfoort var 14+ 114534008 | Salmonella Amersfoort var 14+ | Salmonella Amsterdam 38658003 | Salmonella Amsterdam | Salmonella Amsterdam var 15+ 114277008 | Salmonella Amsterdam var. 15+ | SALMONELLA ANATUM 37261005 | Salmonella Anatum | Salmonella Anatum var 15+ 114274001 | Salmonella Anatum var 15+ | Salmonella Anatum var 15+,34+ 114290001 | Salmonella Anatum var 15+, 34+ | Salmonella Angoda 23032006 | Salmonella Angoda | Salmonella Angola subsp II 114585000 | Salmonella II 1,9,12:z:z6 | Salmonella Ank 69252007 | Salmonella Ank | Salmonella Aqua 11325004 | Salmonella Aqua | Salmonella Arechavaleta 78139003 | Salmonella Arechavaleta | Salmonella Argentina subsp IV 66385002 | Salmonella IV argentina | Salmonella Atento 361397004 | Salmonella Atento | Salmonella Augustenborg 59130007 | Salmonella Augustenborg | Salmonella Babelsberg 19368001 | Salmonella Babelsberg | Salmonella Badagry 114414009 | Salmonella Badgary | Salmonella Bahrenfeld 43575001 | Salmonella Bahrenfeld | Salmonella Baildon 5864000 | Salmonella Baildon | SALMONELLA BALL 65850002 | Salmonella Ball | Salmonella Banalia 51210001 | Salmonella Banalia |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Salmonella Banana 84106001 | Salmonella Banana | Salmonella Bardo 84346001 | Salmonella Bardo | SALMONELLA BAREILLY 8044005 | Salmonella Bareilly | Salmonella Beaudesert 25535004 | Salmonella Beaudesert | Salmonella Benefica 112299001 | Salmonella Benfica | Salmonella Bere 47420006 | Salmonella Bere | Salmonella Bergedorf 57506006 | Salmonella Bergedorf | Salmonella Berlin 81684001 | Salmonella Berlin | Salmonella Berta 40697005 | Salmonella Berta | Salmonella Bessi 31044005 | Salmonella Bessi | Salmonella Biafra 35197009 | Salmonella Biafra | Salmonella Bilthoven subsp II 114862006 | Salmonella II 47:a:1,5 | SALMONELLA BIRKENHEAD 33108006 | Salmonella Birkenhead | Salmonella Bispebjerg 2932003 | Salmonella Bispebjerg | Salmonella Bleadon subsp II 114433004 | Salmonella II 17:g,t:[e,n,x,z15] | Salmonella Blegdam 82647001 | Salmonella Blegdam | Salmonella Blockley 53684004 | Salmonella Blockley | Salmonella Blukwa 45958003 | Salmonella Blukwa | Salmonella Boecker 80508000 | Salmonella Boecker | Salmonella Bolton 81340008 | Salmonella Bolton | Salmonella Bonariensis 51196000 | Salmonella Bonariensis | Salmonella bongori 398393000 | Salmonella bongori | Salmonella Bonn 55290005 | Salmonella Bonn | Salmonella Bootle 38676005 | Salmonella Bootle | Salmonella Borbeck 35504002 | Salmonella Borbeck | Salmonella Boulders subsp II 114357003 | Salmonella II 1,13,23:m,t:z42 | Salmonella Bournemouth 10353006 | Salmonella Bournemouth | SALMONELLA BOVISMORBIFICANS 81938008 | Salmonella Bovismorbificans | Salmonella Bradford 75104004 | Salmonella Bradford | SALMONELLA BRAENDERUP 35225001 | Salmonella Braenderup | Salmonella Brandenburg 16888008 | Salmonella Brandenburg | Salmonella Brazil 49666004 | Salmonella Brazil | Salmonella Brazzaville 34153004 | Salmonella Brazzaville | SALMONELLA BREDENEY 82364007 | Salmonella Bredeney | Salmonella Breukelen 12924006 | Salmonella Breukelen | Salmonella Brisbane 88121001 | Salmonella Brisbane | Salmonella Bron 81978001 | Salmonella Bron | Salmonella Bronx 9179000 | Salmonella Bronx | Salmonella Broughton 60230009 | Salmonella Broughton | Salmonella Brunei 35972009 | Salmonella Brunei | Salmonella Budapest 22307009 | Salmonella Budapest | Salmonella Bukavu 22729005 | Salmonella Bukavu | Salmonella Bullbay 37971001 | Salmonella Bullbay | Salmonella Bunnik subsp II 114830008 | Salmonella II 43:z42:1,5,7 | Salmonella Butantan 75196009 | Salmonella enterica subspecies enterica serovar Butantan | Salmonella Butantan var 15+,34+ 398466004 | Salmonella enterica subspecies enterica serovar Butantan var O:15, 34+ | Salmonella Cairns 69847009 | Salmonella Cairns | Salmonella Caledon subsp II 114473005 | Salmonella II 1,4,12,27:g,[m],[s],t:e,n,x | Salmonella California 7031002 | Salmonella California | Salmonella Calvinia subsp II 91112005 | Salmonella Calvinia | Salmonella Canastel subsp II 114592005 | Salmonella II 9,12:z29:1,5 | Salmonella Cannonhill 75347006 | Salmonella Cannonhill | Salmonella Cannstatt 28206007 | Salmonella Cannstatt | Salmonella Carletonville subsp II 114714005 | Salmonella II 38:d:1,5 | Salmonella Carmel 6938001 | Salmonella Carmel | Salmonella Carnac 57587004 | Salmonella Carnac | Salmonella Carrau 32624003 | Salmonella Carrau | Salmonella Cerro 70344002 | Salmonella Cerro | SALMONELLA CHAILEY 83013006 | Salmonella Chailey | SALMONELLA CHAMPAIGN 63877008 | Salmonella Champaign | Salmonella Chandans 748001 | Salmonella Chandans | Salmonella Charity 9818000 | Salmonella Charity | Salmonella Chersina subsp II 114873004 | Salmonella II 47:z:z6 | SALMONELLA CHESTER 5461002 | Salmonella Chester | Salmonella Chicago 64975005 | Salmonella Chicago | Salmonella Chincol 67643004 | Salmonella Chincol | Salmonella Chingola 22367006 | Salmonella Chingola | Salmonella Chittagong 30864008 | Salmonella Chittagong | SALMONELLA CHOLERAESUIS 80232006 | Salmonella Choleraesuis | Salmonella Choleraesuis v Decatur 416057009 | Salmonella Choleraesuis var. Decatur | Salmonella Choleraesuis v Kunzendorf 370577001 | Salmonella Choleraesuis var. Kunzendorf | Salmonella Christiansborg 30665007 | Salmonella Christiansborg | Salmonella Chudleigh subsp II 398422001 | Salmonella II 3,10:e,n,x:1,7 | Salmonella Clifton subsp II 114369006 | Salmonella II 13,22:z29:1,5 | Salmonella Coeln 16109000 | Salmonella Coeln | Salmonella Coleypark 4311001 | Salmonella Coleypark | Salmonella Colindale 59551003 | Salmonella Colindale | Salmonella Concord 80014004 | Salmonella Concord | Salmonella Coogee 34520002 | Salmonella Coogee | SALMONELLA CORVALLIS 45548005 | Salmonella Corvallis | Salmonella Cremieu 69040005 | Salmonella Cremieu | Salmonella Cubana 55932005 | Salmonella Cubana | Salmonella Curacao 33172008 | Salmonella Curacao | Salmonella Dahlem 15578008 | Salmonella Dahlem | Salmonella Dan 50772008 | Salmonella Dan |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Salmonella Daressalaam subsp II 114595007 | Salmonella II 1,9,12:l,w:e,n,x | Salmonella Degania subsp II 114759002 | Salmonella II 40:z4,z24:z39 | Salmonella Denver 8249007 | Salmonella Denver | SALMONELLA DERBY 37091006 | Salmonella Derby | Salmonella Detroit subsp II 114804009 | Salmonella II 42:z:1,5 | Salmonella Djama 21329006 | Salmonella Djama | Salmonella Djugu 36604000 | Salmonella Djugu | Salmonella Dublin 62136003 | Salmonella Dublin | Salmonella Duesseldorf 77576006 | Salmonella Duesseldorf | Salmonella Dugbe 82666001 | Salmonella Dugbe | Salmonella Duisburg 42410007 | Salmonella Duisburg | Salmonella Durban 57664002 | Salmonella Durban | Salmonella Durbanville subsp II 114492007 | Salmonella II 1,4,12,27:z39:1,[5],7 | Salmonella Durham 56632001 | Salmonella Durham | Salmonella Ealing 15319009 | Salmonella Ealing | Salmonella Eastbourne 34547007 | Salmonella Eastbourne | Salmonella Edinburg 55274005 | Salmonella Edinburg | Salmonella Elisabethville 33136001 | Salmonella Elisabethville | Salmonella Emek 53814008 | Salmonella Emek | Salmonella Emmastad 25037003 | Salmonella Emmastad | SALMONELLA ENTERITIDIS 73525009 | Salmonella Enteritidis | Salmonella Eppendorf 51705004 | Salmonella Eppendorf | Salmonella Essen 4687003 | Salmonella Essen | Salmonella Falkensee 22899009 | Salmonella Falkensee | Salmonella Ferruch 49297008 | Salmonella Ferruch | Salmonella Finchley subsp II 114630006 | Salmonella II 3,10:z:e,n,x | Salmonella Fitzroy 19430004 | Salmonella Fitzroy | Salmonella Flint subsp IV 404623007 | Salmonella IV 50:z4,z23:- | Salmonella Florida 38849007 | Salmonella Florida | Salmonella Fortune 74092000 | Salmonella Fortune | Salmonella Foulpointe subsp II 114715006 | Salmonella II 38:g,t:- | Salmonella Fremantle subsp II 114796006 | Salmonella II 42:g,t:- | Salmonella Friedenau 51128007 | Salmonella Friedenau | Salmonella Frintrop 2872006 | Salmonella Frintrop | Salmonella Fulica 6184007 | Salmonella Fulica | Salmonella Gabon 85588001 | Salmonella Gabon | Salmonella Galiema 4614004 | Salmonella Galiema | Salmonella Gallinarum 370576005 | Salmonella Gallinarum | Salmonella Gaminara 59598006 | Salmonella Gaminara | Salmonella Gatineau 52995002 | Salmonella Gatineau | Salmonella Gatow 76921003 | Salmonella Gatow | Salmonella Gatuni 31608001 | Salmonella Gatuni | Salmonella Georgia 22117007 | Salmonella Georgia | Salmonella Gera 65525006 | Salmonella Gera | Salmonella Geraldton 40703006 | Salmonella Geraldton | Salmonella Germiston subsp II 114548008 | Salmonella II 6,8:m,t:e,n,x | SALMONELLA GIVE 71768003 | Salmonella Give | Salmonella Give var 15+ 114281008 | Salmonella Give var 15+ | Salmonella Give var 15+,34+ 114293004 | Salmonella Give var 15+, 34+ | Salmonella Glostrup 6327006 | Salmonella Glostrup | Salmonella Gnesta 26622005 | Salmonella Gnesta | Salmonella Godesberg 32275009 | Salmonella Godesberg | SALMONELLA GOELZAU 67457006 | Salmonella Goelzau | Salmonella Goeteborg 40681000 | Salmonella Goeteborg | Salmonella Goettingen 53230005 | Salmonella Goettingen | Salmonella Goldcoast 16820003 | Salmonella Goldcoast | Salmonella Goverdhan 66197006 | Salmonella Goverdhan | Salmonella Grabouw susbsp II 114325004 | Salmonella II 11:g,[m],s,t:z39 | Salmonella Group A 398426003 | Salmonella group O:2 | Salmonella Group B 398467008 | Salmonella group O:4 | Salmonella Grumpensis 22752009 | Salmonella Grumpensis | Salmonella Haardt 64842001 | Salmonella Haardt | Salmonella Hadar 49491006 | Salmonella Hadar | Salmonella Hagenbeck subsp II 114881003 | Salmonella II 48:d:z6 | Salmonella Haifa 88255008 | Salmonella Haifa | Salmonella Hamburg subsp II 302660006 | Salmonella II 1,9,12:g,m,[s],t:[1,5,7]:[z42] | Salmonella Handen 29429005 | Salmonella Handen | Salmonella Hartford 26463008 | Salmonella Hartford | SALMONELLA HAVANA 38788001 | Salmonella Havana | SALMONELLA HEIDELBERG 71865006 | Salmonella Heidelberg | Salmonella Heilbron 114510003 | Salmonella II 6,7:l,z28:1,5:[z42] | Salmonella Heron 76657005 | Salmonella Heron | Salmonella Herston 64578002 | Salmonella Herston | Salmonella Herzliya 11188006 | Salmonella Herzliya | SALMONELLA HESSAREK 13682001 | Salmonella Hessarek | Salmonella Hilversum 14262001 | Salmonella Hilversum | Salmonella Hindmarsh 45512008 | Salmonella Hindmarsh | Salmonella Hofit 74630005 | Salmonella Hofit | Salmonella Horsham 9439003 | Salmonella Horsham | Salmonella Houten subsp IV 398371005 | Salmonella enterica subsp. houtenae | Salmonella Huila subsp II 114335005 | Salmonella II 11:l,z28:e,n,x | Salmonella Hull 82997004 | Salmonella Hull | Salmonella Humber subsp II 15063007 | Salmonella II humber | SALMONELLA HVITTINGFOSS 67392004 | Salmonella Hvittingfoss | Salmonella Ibadan 3373000 | Salmonella Ibadan |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Salmonella Idikan 52400005 | Salmonella Idikan | Salmonella Indiana 12278000 | Salmonella Indiana | SALMONELLA INFANTIS 82071007 | Salmonella Infantis | Salmonella Inpraw 67259007 | Salmonella Inpraw | Salmonella Inverness 57585007 | Salmonella Inverness | Salmonella Ipswich 78550009 | Salmonella Ipswich | Salmonella Irumu 158005 | Salmonella Irumu | Salmonella Isangi 89032008 | Salmonella Isangi | Salmonella Israel 41533007 | Salmonella Israel | Salmonella Istanbul 35373008 | Salmonella Istanbul | Salmonella Ituri 32771001 | Salmonella Ituri | Salmonella Jamaica 4005005 | Salmonella Jamaica | Salmonella Jangwani 8339007 | Salmonella Jangwani | SALMONELLA JAVIANA 88022005 | Salmonella Javiana | Salmonella Jerusalem 1812001 | Salmonella Jerusalem | SALMONELLA JOHANNESBURG 47508001 | Salmonella Johannesburg | Salmonella Jubilee 45264001 | Salmonella Jubilee | Salmonella Kaapstad 54354005 | Salmonella Kaapstad | Salmonella Kahla 14219002 | Salmonella Kahla | Salmonella Kalamu 89640003 | Salmonella Kalamu | Salmonella Kalina 66585001 | Salmonella Kalina | Salmonella Kallo 114551001 | Salmonella Kallo | Salmonella Kalumburu 53459007 | Salmonella Kalumburu | Salmonella Kandla 48932004 | Salmonella Kandla | Salmonella Kapemba 87578001 | Salmonella Kapemba | Salmonella Kedougou 83141008 | Salmonella Kedougou | Salmonella Kentucky 8455004 | Salmonella Kentucky | Salmonella Kenya 91354003 | Salmonella Kenya | SALMONELLA KIAMBU 11901002 | Salmonella Kiambu | Salmonella Kibi 6675008 | Salmonella Kibi | Salmonella Kibusi 26031006 | Salmonella Kibusi | Salmonella Kiel 1245005 | Salmonella Kiel | Salmonella Kimberley 68218004 | Salmonella Kimberley | Salmonella Kimuenza 75090001 | Salmonella Kimuenza | Salmonella Kingabwa 72119007 | Salmonella Kingabwa | Salmonella Kinondoni 6086006 | Salmonella Kinondoni | Salmonella Kirkee 62866008 | Salmonella Kirkee | Salmonella Kisangani 52492008 | Salmonella kisangani | Salmonella Kisarawe 29115000 | Salmonella Kisarawe | Salmonella Klapmuts subsp II 114857005 | Salmonella II 45:z:z39 | Salmonella Kokomlemle 79570007 | Salmonella Kokomlemle | Salmonella Korovi 44834009 | Salmonella Korovi | SALMONELLA KOTTBUS 39664003 | Salmonella Kottbus | Salmonella Kotte 89806001 | Salmonella Kotte | Salmonella Krefeld 86656007 | Salmonella Krefeld | Salmonella Kuilsrivier subsp II 114575001 | Salmonella II 1,9,12:g,m,s,t:e,n,x | Salmonella Kumasi 58946009 | Salmonella Kumasi | Salmonella Kuru 67346002 | Salmonella Kuru | Salmonella Lagos 24289007 | Salmonella Lagos | Salmonella Landau 46793007 | Salmonella Landau | Salmonella Langenhorn 76337004 | Salmonella Langenhorn | SALMONELLA LANSING 51706003 | Salmonella Lansing | Salmonella Larochelle 58723002 | Salmonella Larochelle | Salmonella Leopoldville 79344007 | Salmonella Leopoldville | SALMONELLA LEXINGTON 39877005 | Salmonella Lexington | Salmonella Lexington var 15+ 114287007 | Salmonella Lexington var 15+ | Salmonella Lexington var 15+,34+ 114295006 | Salmonella Lexington var 15+, 34+ | Salmonella Lille 8307000 | Salmonella Lille | Salmonella Lille var 14+ 114538006 | Salmonella Lille var 14+ | Salmonella Limbe subsp II 114350001 | Salmonella II 1,13,22:g,m,t:[1,5] | Salmonella Limete 280003 | Salmonella Limete | Salmonella Lindenburg 64078005 | Salmonella Lindenburg | Salmonella Lindern 112308002 | Salmonella Lindern | Salmonella Lindi 25939003 | Salmonella Lindi | Salmonella Lindrick subsp II 114574002 | Salmonella II 9,12:e,n,x:1,[5],7 | SALMONELLA LITCHFIELD 81614007 | Salmonella Litchfield | SALMONELLA LIVERPOOL 25767003 | Salmonella Liverpool | Salmonella Livingstone 66713000 | Salmonella Livingstone | Salmonella Livingstone var 14+ 114539003 | Salmonella Livingstone var 14+ | Salmonella Llandoff 17007007 | Salmonella Llandoff | Salmonella Llandudno subsp II 114673002 | Salmonella II 28:g,(m),[s],t:1,5 | Salmonella Loanda 14078008 | Salmonella loanda | Salmonella Lohbruegge subsp IV 114838001 | Salmonella IV 1,44:z4,z32:- | Salmonella Lomalinda 398483008 | Salmonella Lomalinda | Salmonella Lomita 17939003 | Salmonella Lomita | Salmonella London 2291004 | Salmonella London | Salmonella London var 15+ 114280009 | Salmonella London var 15+ | Salmonella Luanshya subsp II 114351002 | Salmonella II 1,13,23:g,m,[s],t:[e,n,x] | Salmonella Luckenwalde 85819008 | Salmonella Luckenwalde | Salmonella Maastricht 89425007 | Salmonella Maastricht | Salmonella Makumira subsp II 7279002 | Salmonella II makumira | Salmonella Malstatt 6065006 | Salmonella Malstatt | Salmonella Manchester 70605000 | Salmonella Manchester | Salmonella Manhattan 20073008 | Salmonella Manhattan | Salmonella Mapo 66496006 | Salmonella Mapo |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Salmonella Maracaibo 15844005 | Salmonella Maracaibo | Salmonella Marina subsp IV 114885007 | Salmonella IV 48:g,z51:- | Salmonella Marseille 87619005 | Salmonella Marseille | Salmonella Matopeni 24680002 | Salmonella Matopeni | SALMONELLA MBANDAKA 9506004 | Salmonella Mbandaka | Salmonella Mbandaka var 25+ 303216008 | Salmonella mbandaka var 25 | Salmonella Meekatharra 48229006 | Salmonella Meekatharra | Salmonella Melbourne 404436000 | Salmonella Melbourne | Salmonella Meleagridis 60651003 | Salmonella Meleagridis | Salmonella Meleagridis var 15+ 398448009 | Salmonella Meleagridis var 15+ | Salmonella Meleagridis var 15+,34+ 114291002 | Salmonella Meleagridis var 15+, 34+ | Salmonella Mendoza 31592001 | Salmonella Mendoza | Salmonella Menston 59099007 | Salmonella Menston | Salmonella Merseyside subsp II 404262007 | Salmonella II 16:g,t:1,5 | SALMONELLA MGULANI 77843003 | Salmonella Mgulani | SALMONELLA MIAMI 64802006 | Salmonella Miami | Salmonella Mikawasima 42709001 | Salmonella Mikawasima | Salmonella Minnesota 84044008 | Salmonella Minnesota | Salmonella Mishmarhaemek 55485009 | Salmonella Mishmarhaemek | SALMONELLA MISSISSIPPI 17330008 | Salmonella Mississippi | Salmonella Mkamba 86837000 | Salmonella Mkamba | Salmonella Mobeni subsp II 404249008 | Salmonella II 16 g,[m],[s],t:[e,n,x] | Salmonella Mokola 64705003 | Salmonella Mokola | Salmonella Molade 9393004 | Salmonella Molade | Salmonella Monschaui 65132007 | Salmonella Monschaui | SALMONELLA MONTEVIDEO 80268001 | Salmonella Montevideo | Salmonella Morehead 67092009 | Salmonella Morehead | Salmonella Mornington 62314007 | Salmonella Mornington | Salmonella Morocco 21618001 | Salmonella Morocco | Salmonella Morotai 76356009 | Salmonella Morotai | Salmonella Moscow 48020001 | Salmonella Moscow | Salmonella Mountmagnet 114657008 | Salmonella Mountmagnet | Salmonella Mowanjum 63734000 | Salmonella Mowanjum | SALMONELLA MUENCHEN 77584005 | Salmonella Muenchen | SALMONELLA MUENSTER 68916009 | Salmonella Muenster | Salmonella Muenster var 15+ 114273007 | Salmonella Muenster var 15+ | Salmonella Muenster var 15+,34+ 114289005 | Salmonella Muenster var 15+,34+ | Salmonella Mundonobo 78045009 | Salmonella Mundonobo | Salmonella Nagoya 83138004 | Salmonella Nagoya | Salmonella Nanga 71991008 | Salmonella Nanga | Salmonella Napoli 45645001 | Salmonella Napoli | Salmonella Nashua 75048007 | Salmonella Nashua | Salmonella Nchanga 40821004 | Salmonella Nchanga | Salmonella Ndolo 60142007 | Salmonella Ndolo | Salmonella Neasden subsp II 114576000 | Salmonella II 9,12:g,s,t:e,n,x | Salmonella Neukoelln 19828009 | Salmonella Neukoelln | Salmonella Newlands 10454004 | Salmonella Newlands | Salmonella Newmexico 78243006 | Salmonella Newmexico | SALMONELLA NEWPORT 56077000 | Salmonella Newport | Salmonella Newyork 62272001 | Salmonella Newyork | Salmonella Nigeria 41176000 | Salmonella Nigeria | Salmonella Nima 26455007 | Salmonella Nima | Salmonella Norwich 10556004 | Salmonella Norwich | Salmonella Nottingham 4868006 | Salmonella Nottingham | Salmonella Nyborg 48465004 | Salmonella Nyborg | Salmonella Nyborg var 15+ 114275000 | Salmonella Nyborg var 15+ | Salmonella Oakey 114507005 | Salmonella Oakey | Salmonella Odozi 509004 | Salmonella Odozi | Salmonella Ohio 67210008 | Salmonella Ohio | Salmonella Ohio var 14+ 114533002 | Salmonella Ohio var 14+ | Salmonella Ohlstedt 4145004 | Salmonella Ohlstedt | Salmonella Ohlstedt var 15+ 398583006 | Salmonella Ohlstedt var 15+ | Salmonella Okatie 56064009 | Salmonella Okatie | SALMONELLA ONDERSTEPOORT 9691005 | Salmonella Onderstepoort | SALMONELLA ORANIENBURG 46667007 | Salmonella Oranienburg | Salmonella Oranienburg var 14+ 114536005 | Salmonella Oranienburg var 14+ | Salmonella Ord 17834009 | Salmonella Ord | SALMONELLA ORIENTALIS 112309005 | Salmonella Orientalis | SALMONELLA ORION 32681008 | Salmonella Orion | Salmonella Orion var 15+ 114285004 | Salmonella Orion var 15+ | Salmonella Orion var 15+ 34+ 114294005 | Salmonella Orion var 15+, 34+ | Salmonella Oritamerin 51825008 | Salmonella oritamerin | SALMONELLA OSLO 35454005 | Salmonella oslo | Salmonella Ouakam 71614001 | Salmonella Ouakam | Salmonella Oxford 67035008 | Salmonella Oxford | Salmonella Oxford var 15+,34+ 114288002 | Salmonella Oxford var 15+,34+ | Salmonella Oysterbeds subsp II 114531000 | Salmonella II 6,7:z:z42 | Salmonella Pakistan 43640009 | Salmonella Pakistan | Salmonella Panama 40114001 | Salmonella Panama | Salmonella Papuana 65779004 | Salmonella Papuana | SALMONELLA PARATYPHI A 79128009 | Salmonella Paratyphi A | Salmonella Paratyphi B 85908006 | Salmonella Paratyphi B | Salmonella Paratyphi B bv Java 128388007 | Salmonella Java | Salmonella Paratyphi C 32488009 | Salmonella Paratyphi C | Salmonella Pensacola 10183008 | Salmonella Pensacola |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Salmonella Perth 42715001 | Salmonella Perth | Salmonella Phoenix subsp II 114864007 | Salmonella II 47:b:1,5 | Salmonella Plymouth 52941007 | Salmonella Plymouth | Salmonella Poano 3596001 | Salmonella Poano | Salmonella Pomona 112314009 | Salmonella Pomona | SALMONELLA POONA 57101009 | Salmonella Poona | Salmonella Portbech subsp II 114800000 | Salmonella II 42:l,v:e,n,x,z15 | SALMONELLA POTSDAM 8544001 | Salmonella Potsdam | Salmonella Pullorum/Gallinarum 20855009 | Salmonella Pullorum | Salmonella Putten 44768008 | Salmonella Putten | Salmonella Ramatgan 8860008 | Salmonella Ramatgan | Salmonella Rand subsp II 114805005 | Salmonella II 42:z:e,n,x,z15 | Salmonella Raus 56737002 | Salmonella Raus | SALMONELLA READING 63396002 | Salmonella Reading | Salmonella Regent 13615007 | Salmonella Regent | Salmonella Richmond 31517006 | Salmonella Richmond | Salmonella Ried 13421000 | Salmonella Ried | SALMONELLA RISSEN 51985007 | Salmonella Rissen | Salmonella Rissen var 14+ 114535009 | Salmonella Rissen var 14+ | Salmonella Roan 10704009 | Salmonella Roan | Salmonella Rostock 48058002 | Salmonella Rostock | Salmonella Roterberg subsp IV 40746009 | Salmonella IV roterberg | Salmonella Rottnest 16723007 | Salmonella Rottnest | Salmonella Rowbarton subsp II 114401008 | Salmonella II 16:m,t:[z42] | SALMONELLA RUBISLAW 80456008 | Salmonella Rubislaw | Salmonella Ruiru 25520000 | Salmonella Ruiru | Salmonella Saarbruecken 55395003 | Salmonella Saarbruecken | Salmonella Sachsenwald subsp IV 114758005 | Salmonella IV 1,40:z4,z23:- | SALMONELLA SAINTPAUL 2820001 | Salmonella Saintpaul | Salmonella Salford 60242004 | Salmonella Salford | Salmonella Sandiego 112287008 | Salmonella Sandiego | Salmonella Sangera 36588009 | Salmonella Sangera | Salmonella Sanjuan 70940001 | Salmonella Sanjuan | Salmonella Schleissheim 41331008 | Salmonella Schleissheim | SALMONELLA SCHWARZENGRUND 45651006 | Salmonella Schwarzengrund | Salmonella Senegal 24090006 | Salmonella Senegal | Salmonella Senftenberg z27 phase 18163008 | Salmonella Senftenberg | Salmonella Seremban 4769009 | Salmonella Seremban | Salmonella Serotype C 116048001 | Salmonella, serogroup C | Salmonella Serotype D 115408009 | Salmonella, serogroup D | Salmonella Serotype E/G 115410006 | Salmonella, serogroup G | SALMONELLA SINGAPORE 29019008 | Salmonella Singapore | Salmonella Slatograd subsp II 114694004 | Salmonella II 30:g,t:- | Salmonella Sofia subsp II 398438007 | Salmonella II 1,4,12,27:b:[e,n,x] | Salmonella Solna 16194002 | Salmonella Solna | Salmonella Souza 12964005 | Salmonella Souza | Salmonella Souza var 15+ 114271009 | Salmonella Souza var 15+ | Salmonella Sp. (Presumptive) 27268008 | Salmonella | Salmonella species 372342007 | Salmonella species | Salmonella Springs subsp II 114735007 | Salmonella II 40:a:z39 | SALMONELLA STANLEY 88091007 | Salmonella Stanley | Salmonella Stanleyville 47441000 | Salmonella Stanleyville | Salmonella Staoueli 20314003 | Salmonella Staoueli | Salmonella Sterrenbos 11738009 | Salmonella Sterrenbos | Salmonella Stockholm var 15+ 114286003 | Salmonella Stockholm var 15+ | Salmonella Strasbourg 72895000 | Salmonella Strasbourg | Salmonella Suberu 11139006 | Salmonella Suberu | Salmonella subsp IIIb 398428002 | Salmonella enterica subsp. diarizonae | Salmonella subsp IV ser 48884009 | Salmonella Weslaco | Salmonella subspecies I 398508004 | Salmonella enterica subsp. enterica | Salmonella subspecies II 398488004 | Salmonella enterica subsp. salamae | Salmonella subspecies VI 398620001 | Salmonella enterica subsp. indica | Salmonella Sundsvall 11488000 | Salmonella Sundsvall | Salmonella Sunnycove 20905000 | Salmonella Sunnycove | Salmonella Surat 40465000 | Salmonella Surat | Salmonella Sydney subsp II 404570001 | Salmonella IIIb 48:i:z | Salmonella Sylvania 114378000 | Salmonella Sylvania | Salmonella Takoradi 57786005 | Salmonella Takoradi | Salmonella Taksony 33296009 | Salmonella Taksony | Salmonella Tallahassee 85277006 | Salmonella Tallahassee | Salmonella Tananarive 45578001 | Salmonella Tananarive | Salmonella Telaviv 47688008 | Salmonella Telaviv | Salmonella Telelkebir 64636003 | Salmonella Telelkebir | Salmonella Telhashomer 85143008 | Salmonella Telhashomer | Salmonella Teltow 61388001 | Salmonella Teltow | Salmonella Tennessee 79153007 | Salmonella Tennessee | Salmonella Teshie 29305002 | Salmonella Teshie | SALMONELLA THOMPSON 4361005 | Salmonella Thompson | Salmonella Toowong 71605006 | Salmonella Toowong | Salmonella Tounouma 30335006 | Salmonella Tounouma | Salmonella Treforest 28623007 | Salmonella Treforest | Salmonella Tshiongwe 41227004 | Salmonella Tshiongwe | SALMONELLA TYPHI 5595000 | Salmonella Typhi | SALMONELLA TYPHIMURIUM 50136005 | Salmonella Typhimurium | Salmonella Uganda 2434007 | Salmonella Uganda |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Salmonella Uganda var 15+ 114282001 | Salmonella Uganda var 15+ | Salmonella Ullevi 8428008 | Salmonella Ullevi | Salmonella Umbilo 25695005 | Salmonella Umbilo | Salmonella Uphill subsp II 114792008 | Salmonella II 42:b:e,n,x,z15 | Salmonella Urbana 50428006 | Salmonella Urbana | Salmonella Ursenbach 3801008 | Salmonella Ursenbach | Salmonella Utrecht 46375008 | Salmonella Utrecht | Salmonella Uzaramo 42614009 | Salmonella Uzaramo | Salmonella Vancouver 78256004 | Salmonella Vancouver | Salmonella Vejle 39215001 | Salmonella Vejle | Salmonella Vejle var 15+ 114272002 | Salmonella Vejle var 15+ | Salmonella Victoria 73249008 | Salmonella Victoria | SALMONELLA VIRCHOW 5929008 | Salmonella Virchow | Salmonella Virginia 112296008 | Salmonella Virginia | Salmonella Wagenia 24951009 | Salmonella Wagenia | Salmonella Wandsbek subsp II 114662009 | Salmonella II 21:z10:[z6] | Salmonella Wandsworth 9479007 | Salmonella Wandsworth | SALMONELLA WANGATA 34473000 | Salmonella Wangata | Salmonella Warragul 6233000 | Salmonella Warragul | Salmonella Wassenaar subsp IV 114910005 | Salmonella IV 50:g,z51:- | SALMONELLA WAYCROSS 28717009 | Salmonella Waycross | SALMONELLA WELIKADE 26964008 | Salmonella Welikade | Salmonella Weltevreden 91661006 | Salmonella Weltevreden | Salmonella Weltevreden var 15+ 114283006 | Salmonella Weltevreden var 15+ | Salmonella Wernigerode 85698004 | Salmonella Wernigerode | Salmonella Westhampton 62099009 | Salmonella Westhampton | Salmonella Westhampton var 15+ 114278003 | Salmonella Westhampton var 15+ | Salmonella Westhampton var 15+,34+ 114292009 | Salmonella Westhampton var 15+, 34+ | Salmonella Weston 72132002 | Salmonella Weston | Salmonella Westpark subsp II 114627004 | Salmonella II 3,10:l,z28:e,n,x | Salmonella Weybridge 70223004 | Salmonella Weybridge | Salmonella Wichita 82829005 | Salmonella Wichita | Salmonella Wien 21975008 | Salmonella Wien | Salmonella Wohlen 18810002 | Salmonella Wohlen | Salmonella Worthington 24666009 | Salmonella Worthington | Salmonella Yarrabah 70689009 | Salmonella Yarrabah | Salmonella Yeerongpilly 54528001 | Salmonella Yeerongpilly | Salmonella Yolo 36282006 | Salmonella Yolo | SALMONELLA ZANZIBAR 29090008 | Salmonella Zanzibar | Salmonella Zanzibar var 15+ 398515007 | Salmonella Zanzibar var 15+ | Salmonella Zehlendorf 86966001 | Salmonella Zehlendorf | Salmonella Zeist subsp II 114646003 | Salmonella II 18:z10:z6 | Saprophyte 284682004 | Saprophyte | Sarcina sp. 131354000 | Sarcina species | Sarcina ventriculi 22267009 | Sarcina ventriculi | Sarcocystis hominis 17696006 | Sarcocystis hominis | Sarcocystis lindemanni 71131007 | Sarcocystis lindemanni | Sarcocystis sp. 372343002 | Sarcocystis species | Sarcocystis suihominis 35193008 | Sarcocystis suihominis | SARCOPTES SCABIEI 67333007 | Sarcoptes scabiei | Sarcoptes species 372345009 | Sarcoptes species | SCEDOSPORIUM APIOSPERMUM 24305000 | Scedosporium boydii | SCEDOSPORIUM PROLIFICANS 69564000 | Scedosporium inflatum | Schistosoma haematobium 3294004 | Schistosoma haematobium | Schistosoma intercalatum 15685002 | Schistosoma intercalatum | Schistosoma japonicum 5249008 | Schistosoma japonicum | Schistosoma mansoni 11168007 | Schistosoma mansonii | Schistosoma mekongi 75475007 | Schistosoma mekongi | Schistosoma species 372346005 | Schistosoma species | Schizophyllum commune 243445006 | Schizophyllum commune | Scopulariopsis brevicaulis 3245004 | Scopulariopsis brevicaulis | SCOPULARIOPSIS KONINGII 243525001 | Scopulariopsis koningii | Scopulariopsis species 115998007 | Scopulariopsis species | Scytalidium dimidiatum 243548006 | Scytalidium dimidiatum | Scytalidium hyalinum 6430000 | Scytalidium hyalinum | SCYTALIDIUM SP. 418096009 | Scytalidium species | Selenomonas artemidis 6754006 | Selenomonas artemidis | Selenomonas dianae 86435000 | Selenomonas dianae | Selenomonas flueggei 27333006 | Selenomonas flueggei | Selenomonas infelix 43571005 | Selenomonas infelix | Selenomonas noxia 70096005 | Selenomonas noxia | Selenomonas species 116415008 | Selenomonas species | Selenomonas sputigena 23595003 | Selenomonas sputigena | Sepedonium sp. 17046009 | Sepedonium | Serratia entomophila 76656001 | Serratia entomophila | SERRATIA FICARIA 802004 | Serratia ficaria | SERRATIA FONTICOLA 112329006 | Serratia fonticola | Serratia grimesii 115005002 | Serratia grimesii | Serratia liquefaciens 23787004 | Serratia liquefaciens | SERRATIA MARCESCENS 33522002 | Serratia marcescens | Serratia odorifera 10413007 | Serratia odorifera | Serratia plymuthica 28955009 | Serratia plymuthica | Serratia proteamaculans 116135003 | Serratia proteamaculans | Serratia quinivorans 438199009 | Serratia quinivorans | SERRATIA RUBIDAEA 55825002 | Serratia rubidaea |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Serratia species 116497004 | Serratia species | Shewanella algae 113702006 | Shewanella algae | Shewanella putrefaciens 113700003 | Shewanella putrefaciens | Shewanella sp. 115158009 | Shewanella | Shewanellaceae 426145004 | Shewanellaceae | Shigella 77352002 | Shigella | SHIGELLA BOYDII 55462008 | Shigella boydii | Shigella boydii 1 125022001 | Shigella boydii, serovar 1 | Shigella boydii 10 125031001 | Shigella boydii, serovar 10 | Shigella boydii 11 125032008 | Shigella boydii, serovar 11 | Shigella boydii 12 125033003 | Shigella boydii, serovar 12 | Shigella boydii 13 125034009 | Shigella boydii, serovar 13 | Shigella boydii 14 125035005 | Shigella boydii, serovar 14 | Shigella boydii 15 125036006 | Shigella boydii, serovar 15 | Shigella boydii 16 406488009 | Shigella boydii 16 | Shigella boydii 17 406489001 | Shigella boydii 17 | Shigella boydii 18 406490005 | Shigella boydii 18 | Shigella boydii 2 125023006 | Shigella boydii, serovar 2 | Shigella boydii 3 125024000 | Shigella boydii, serovar 3 | Shigella boydii 4 125025004 | Shigella boydii, serovar 4 | Shigella boydii 5 125026003 | Shigella boydii, serovar 5 | Shigella boydii 6 125027007 | Shigella boydii, serovar 6 | Shigella boydii 7 125028002 | Shigella boydii, serovar 7 | Shigella boydii 8 125029005 | Shigella boydii, serovar 8 | Shigella boydii 9 125030000 | Shigella boydii, serovar 9 | Shigella boydii E16553/79 406491009 | Shigella boydii 19 [Provisional Serotype E16553] | SHIGELLA DYSENTERIAE 43612004 | Shigella dysenteriae | Shigella dysenteriae 1 124995002 | Shigella dysenteriae, serovar 1 | Shigella dysenteriae 10 125004004 | Shigella dysenteriae, serovar 10 | Shigella dysenteriae 11 406494001 | Shigella dysenteriae 11 | Shigella dysenteriae 12 406495000 | Shigella dysenteriae 12 | Shigella dysenteriae 13 406496004 | Shigella dysenteriae 13 | Shigella dysenteriae 14 406498003 | Shigella dysenteriae 14 | Shigella dysenteriae 15 406497008 | Shigella dysenteriae 15 | Shigella dysenteriae 2 124996001 | Shigella dysenteriae, serovar 2 | Shigella dysenteriae 3 124997005 | Shigella dysenteriae, serovar 3 | Shigella dysenteriae 4 124998000 | Shigella dysenteriae, serovar 4 | Shigella dysenteriae 5 124999008 | Shigella dysenteriae, serovar 5 | Shigella dysenteriae 6 125000008 | Shigella dysenteriae, serovar 6 | Shigella dysenteriae 7 125001007 | Shigella dysenteriae, serovar 7 | Shigella dysenteriae 8 125002000 | Shigella dysenteriae, serovar 8 | Shigella dysenteriae 9 125003005 | Shigella dysenteriae, serovar 9 | SHIGELLA FLEXNERI 85729005 | Shigella flexneri | Shigella flexneri 1 125005003 | Shigella flexneri, serovar 1 | Shigella flexneri 1a 125006002 | Shigella flexneri, serovar 1a | Shigella flexneri 1b 125007006 | Shigella flexneri, serovar 1b | Shigella flexneri 2 125008001 | Shigella flexneri, serovar 2 | Shigella flexneri 2a 125009009 | Shigella flexneri, serovar 2a | Shigella flexneri 2b 125010004 | Shigella flexneri, serovar 2b | Shigella flexneri 3 125011000 | Shigella flexneri, serovar 3 | Shigella flexneri 3a 125012007 | Shigella flexneri, serovar 3a | Shigella flexneri 3b 125013002 | Shigella flexneri, serovar 3b | Shigella flexneri 3c 125014008 | Shigella flexneri, serovar 3c | Shigella flexneri 4 125015009 | Shigella flexneri, serovar 4 | Shigella flexneri 4a 125016005 | Shigella flexneri, serovar 4a | Shigella flexneri 4b 125017001 | Shigella flexneri, serovar 4b | Shigella flexneri 5 125018006 | Shigella flexneri, serovar 5 | Shigella flexneri 5a 406501003 | Shigella flexneri 5a [V:3,4] | Shigella flexneri 5b 406502005 | Shigella flexneri 5b [V:7,8] | Shigella flexneri 6 125019003 | Shigella flexneri, serovar 6 | Shigella flexneri untypable 406503000 | Shigella flexneri serotype undetermined (Subgroup B) | Shigella flexneri var X 125020009 | Shigella flexneri, serovar X | Shigella flexneri var Y 125021008 | Shigella flexneri, serovar Y | Shigella sonnei 4298009 | Shigella sonnei | Shigella sonnei biotype d 406504006 | Shigella sonnei (Subgroup D) | Shigella species 116498009 | Shigella species | Simonsiella crassa 444924000 | Alysiella crassa | Simonsiella muelleri 74269008 | Simonsiella muelleri | Simonsiella species 131355004 | Simonsiella species | Simonsiella steedae 51548007 | Simonsiella steedae | Sindbis 30681002 | Sindbis virus | Slackia exigua 434236002 | Slackia exigua | Slackia heliotrinireducens 437984006 | Slackia heliotrinireducens | Small round structured virus 407359000 | Norovirus | Solobacterium species 413349009 | Solobacterium species | Spegazzinia sp 419763008 | Spegazzinia | Sphingobacteriaceae 425956007 | Sphingobacteriaceae | Sphingobacterium faecium 113953003 | Sphingobacterium faecium | Sphingobacterium multivorum 51595006 | Sphingobacterium multivorum | Sphingobacterium species 131357007 | Sphingobacterium species | Sphingobacterium spiritivorum 61675006 | Sphingobacterium spiritivorum | Sphingobacterium thalpophilum 113954009 | Sphingobacterium thalpophilum | Sphingomonadaceae 414224000 | Sphingomonadaceae | Sphingomonas capsulata 113741008 | Sphingomonas capsulata | Sphingomonas parapaucimobilis 243349004 | Sphingomonas parapaucimobilis |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING SPHINGOMONAS PAUCIMOBILIS 243350004 | Sphingomonas paucimobilis | Sphingomonas species 131235002 | Sphingomonas species | Spirillum minus 35164008 | Spirillum minus | Spirochaetes 419328001 | Class Spirochaetes | Sporobolomyces salmonicolor 243446007 | Sporobolomyces salmonicolor | SPOROTHRIX SCHENCKII 32662000 | Sporothrix schenkii | Staphylococcaceae 414225004 | Staphylococcaceae | Staphylococcus arlettae 72465001 | Staphylococcus arlettae | Staphylococcus aureus 3092008 | Staphylococcus aureus | STAPHYLOCOCCUS AURICULARIS 45654003 | Staphylococcus auricularis | STAPHYLOCOCCUS CAPITIS 40347003 | Staphylococcus capitis | STAPHYLOCOCCUS CAPRAE 76969000 | Staphylococcus caprae | STAPHYLOCOCCUS CARNOSUS 9784002 | Staphylococcus carnosus | Staphylococcus carnosus subspecies carnosus 438905007 | Staphylococcus carnosus carnosus | Staphylococcus carnosus subspecies utilis 438733001 | Staphylococcus carnosus utilis | Staphylococcus caseolyticus 416613009 | Macrococcus caseolyticus | Staphylococcus chromogenes 56629004 | Staphylococcus chromogenes | STAPHYLOCOCCUS COHNII 66872005 | Staphylococcus cohnii | Staphylococcus cohnii spp cohnii 113963006 | Staphylococcus cohnii ss cohnii | Staphylococcus cohnii ssp urealyticus 103493004 | Staphylococcus cohnii subspecies urealyticus | Staphylococcus condimenti 439185000 | Staphylococcus condimenti | STAPHYLOCOCCUS DELPHINI 113964000 | Staphylococcus delphini | STAPHYLOCOCCUS EPIDERMIDIS 60875001 | Staphylococcus epidermidis | Staphylococcus equorum 28217008 | Staphylococcus equorum | Staphylococcus felis 113965004 | Staphylococcus felis | Staphylococcus fleurettii 438257002 | Staphylococcus fleurettii | Staphylococcus gallinarum 8056006 | Staphylococcus gallinarum | STAPHYLOCOCCUS HAEMOLYTICUS 83452006 | Staphylococcus haemolyticus | STAPHYLOCOCCUS HOMINIS 44827007 | Staphylococcus hominis | Staphylococcus hominis subspecies hominis 432505008 | Staphylococcus hominis hominis | Staphylococcus hyicus 19683001 | Staphylococcus hyicus | Staphylococcus intermedius 34605002 | Staphylococcus intermedius | Staphylococcus kloosii 53227003 | Staphylococcus kloosii | Staphylococcus lentus 40253001 | Staphylococcus lentus | Staphylococcus lugdunensis 103494005 | Staphylococcus lugdunensis | Staphylococcus lutrae 113968002 | Staphylococcus lutrae | Staphylococcus muscae 113969005 | Staphylococcus muscae | Staphylococcus nepalensis 438681002 | Staphylococcus nepalensis | Staphylococcus pasteuri 103495006 | Staphylococcus pasteuri | Staphylococcus piscifermentans 113970006 | Staphylococcus piscifermentans | STAPHYLOCOCCUS SACCHAROLYTICUS 41103009 | Staphylococcus saccharolyticus | STAPHYLOCOCCUS SAPROPHYTICUS 19743000 | Staphylococcus saprophyticus | Staphylococcus schleiferi 131360000 | Staphylococcus schleiferi | Staphylococcus sciuri 70806002 | Staphylococcus sciuri | Staphylococcus sciuri subspecies carnaticus 113975001 | Staphylococcus sciuri carnaticus | Staphylococcus sciuri subspecies rodentium 113976000 | Staphylococcus sciuri rodentium | STAPHYLOCOCCUS SIMULANS 52122005 | Staphylococcus simulans | Staphylococcus species 116499001 | Staphylococcus species | Staphylococcus succinus subspecies casei 440815004 | Staphylococcus succinus casei | Staphylococcus succinus subspecies succinus 441130000 | Staphylococcus succinus succinus | STAPHYLOCOCCUS VITULINUS 440569005 | Staphylococcus vitulinus | STAPHYLOCOCCUS WARNERI 63550006 | Staphylococcus warneri | Staphylococcus xylosus 32737005 | Staphylococcus xylosus | Stemphylium sp. 90824006 | Stemphylium | STENOTROPHOMONAS MALTOPHILIA 113697002 | Stenotrophomonas maltophilia | Stenotrophomonas species 116400007 | Stenotrophomonas species | STEPHANOASCUS CIFERRII 415966003 | Stephanoascus ciferrii | Stratford Virus 48439003 | Stratford virus | STREPTOBACILLUS MONILIFORMIS 16372003 | Streptobacillus moniliformis | Streptobacillus species 419405003 | Streptobacillus species | Streptococcaceae 115107007 | Streptococcaceae | STREPTOCOCCUS ACIDOMINIMUS 51182006 | Streptococcus acidominimus | STREPTOCOCCUS ALACTOLYTICUS 34228005 | Streptococcus alactolyticus | STREPTOCOCCUS ANGINOSUS 44304009 | Streptococcus anginosus | Streptococcus australis 415598004 | Streptococcus australis | Streptococcus bovis 415599007 | Streptococcus bovis group | Streptococcus canis 88231003 | Streptococcus canis | STREPTOCOCCUS CONSTELLATUS 76199005 | Streptococcus constellatus | Streptococcus constellatus subspecies constellatus 415601009 | Streptococcus constellatus subspecies constellatus | Streptococcus constellatus subspecies pharyngis 415602002 | Streptococcus constellatus subspecies pharyngis | Streptococcus cricetus 34838009 | Streptococcus criceti | Streptococcus cristatus 113980005 | Streptococcus cristatus | Streptococcus downei 12704003 | Streptococcus dolonei | Streptococcus dysgalactiae 40812000 | Streptococcus dysgalactiae | Streptococcus dysgalactiae (S.equisimils) 128338004 | Streptococcus dysgalactiae subsp. equisimilis | Streptococcus equi 12447002 | Streptococcus equi | Streptococcus equi subsp equi (Group C) 113984001 | Streptococcus equi subsp. equi | Streptococcus equi subsp zooepidemicus (Group C) 33708000 | Streptococcus equi subsp. zooepidemicus | Streptococcus equinus (bovis) 72646003 | Streptococcus equinus | STREPTOCOCCUS EQUISIMILIS 113982002 | Streptococcus dysgalactiae subsp. dysgalactiae | Streptococcus ferus 10049004 | Streptococcus ferus | Streptococcus gallolyticus 113985000 | Streptococcus gallolyticus | Streptococcus gallolyticus subsp macedonicus 421004005 | Streptococcus gallolyticus subspecies macedonicus | Streptococcus gallolyticus subspecies gallolyticus 421544007 | Streptococcus gallolyticus subspecies gallolyticus | Streptococcus gallolyticus subspecies pasteurianus 421253004 | Streptococcus gallolyticus subspecies pasteurianus |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Streptococcus gordonii 113986004 | Streptococcus gordonii | Streptococcus group E 37916002 | Streptococcus, group E | Streptococcus hyointestinalis 113987008 | Streptococcus hyointestinalis | Streptococcus hyovaginalis 113988003 | Streptococcus hyovaginalis | Streptococcus infantarius 415603007 | Streptococcus infantarius | Streptococcus infantarius subsp coli 437915004 | Streptococcus infantarius coli | Streptococcus infantarius subspecies infantarius 432506009 | Streptococcus infantarius subspecies infantarius | Streptococcus infantis 415604001 | Streptococcus infantis | Streptococcus iniae 79050007 | Streptococcus iniae | STREPTOCOCCUS INTERMEDIUS 62170002 | Streptococcus intermedius | Streptococcus lutetiensis 415605000 | Streptococcus lutetiensis | Streptococcus macacae 59717000 | Streptococcus macacae | STREPTOCOCCUS MILLERI GROUP 415597009 | Streptococcus anginosus group | STREPTOCOCCUS MITIS 57997003 | Streptococcus mitis | STREPTOCOCCUS MITIS GROUP 127539005 | Streptococcus mitis group | Streptococcus mutans 214001 | Streptococcus mutans | Streptococcus mutans (Viridans Group) 31703004 | Streptococcus, viridans group | Streptococcus mutans group 127536003 | Streptococcus mutans group | Streptococcus oralis 19870004 | Streptococcus oralis | Streptococcus parasanguinis 113990002 | Streptococcus parasanguinis | Streptococcus peroris 416347004 | Streptococcus peroris | Streptococcus pleomorphus 32134008 | Streptococcus pleomorphus | STREPTOCOCCUS PNEUMONIAE 9861002 | Streptococcus pneumoniae | Streptococcus pneumoniae non-typeable 415620006 | Streptococcus pneumoniae, nontypeable | Streptococcus pneumoniae serotype 10B 428124003 | Streptococcus pneumoniae serotype 10B | Streptococcus pneumoniae serotype 10F 441602004 | Streptococcus pneumoniae serotype 10F | Streptococcus pneumoniae serotype 15A 443239003 | Streptococcus pneumoniae serotype 15A | Streptococcus pneumoniae serotype 2 419527005 | Streptococcus pneumoniae serotype 2 | Streptococcus pneumoniae serotype 23B 427741005 | Streptococcus pneumoniae serotype 23B | Streptococcus pneumoniae serotype 28A 444352000 | Streptococcus pneumoniae serotype 28A | Streptococcus pneumoniae serotype 28F 444353005 | Streptococcus pneumoniae serotype 28F | Streptococcus pneumoniae serotype 29 131363003 | Streptococcus pneumoniae serotype 29 | Streptococcus pneumoniae serotype 33A 442049002 | Streptococcus pneumoniae serotype 33A | Streptococcus pneumoniae serotype 34 416784004 | Streptococcus pneumoniae serotype 34 | Streptococcus pneumoniae serotype 39 443671001 | Streptococcus pneumoniae serotype 39 | Streptococcus pneumoniae serotype 40 415617003 | Streptococcus pneumoniae serotype 40 | Streptococcus pneumoniae serotype 5 419871001 | Streptococcus pneumoniae serotype 5 | Streptococcus pneumoniae serotype 6B 418902003 | Streptococcus pneumoniae serotype 6B | Streptococcus pneumoniae serotype 7A 415619000 | Streptococcus pneumoniae serotype 7A | Streptococcus pneumoniae serotype 9A 419167001 | Streptococcus pneumoniae serotype 9A | Streptococcus pneumoniae serotype 9L 418883007 | Streptococcus pneumoniae serotype 9L | Streptococcus pneumoniae type 1 415607008 | Streptococcus pneumoniae serotype 1 | Streptococcus pneumoniae type 10A 415608003 | Streptococcus pneumoniae serotype 10A | Streptococcus pneumoniae type 11A 419071000 | Streptococcus pneumoniae serotype 11A | Streptococcus pneumoniae type 12F 419305002 | Streptococcus pneumoniae serotype 12F | Streptococcus pneumoniae type 13 428366009 | Streptococcus pneumoniae serotype 13 | Streptococcus pneumoniae type 14 103498008 | Streptococcus pneumoniae serotype 14 | Streptococcus pneumoniae type 15B 415610001 | Streptococcus pneumoniae serotype 15B | Streptococcus pneumoniae type 15C 443240001 | Streptococcus pneumoniae serotype 15C | Streptococcus pneumoniae type 16F 131362008 | Streptococcus pneumoniae serogroup 16 | Streptococcus pneumoniae type 17F 420138009 | Streptococcus pneumoniae serotype 17F | Streptococcus pneumoniae type 18B 418147001 | Streptococcus pneumoniae serogroup 18 | Streptococcus pneumoniae type 18C 418451009 | Streptococcus pneumoniae serotype 18C | Streptococcus pneumoniae type 19A 415611002 | Streptococcus pneumoniae serotype 19A | Streptococcus pneumoniae type 19B 127541006 | Streptococcus pneumoniae serogroup 19 | Streptococcus pneumoniae type 19F 419915004 | Streptococcus pneumoniae serotype 19F | Streptococcus pneumoniae type 20 415612009 | Streptococcus pneumoniae serotype 20 | Streptococcus pneumoniae type 22A 441566007 | Streptococcus pneumoniae serotype 22A | Streptococcus pneumoniae type 22F 420216004 | Streptococcus pneumoniae serotype 22F | Streptococcus pneumoniae type 23A 415613004 | Streptococcus pneumoniae serogroup 23 | Streptococcus pneumoniae type 23F 418217008 | Streptococcus pneumoniae serotype 23F | Streptococcus pneumoniae type 3 103497003 | Streptococcus pneumoniae serotype 3 | Streptococcus pneumoniae type 31 443670000 | Streptococcus pneumoniae serotype 31 | Streptococcus pneumoniae type 33F 420148006 | Streptococcus pneumoniae serotype 33F | Streptococcus pneumoniae type 35F 429569005 | Streptococcus pneumoniae serogroup 35 | Streptococcus pneumoniae type 38 415615006 | Streptococcus pneumoniae serotype 38 | Streptococcus pneumoniae type 4 415616007 | Streptococcus pneumoniae serotype 4 | Streptococcus pneumoniae type 6A 443156004 | Streptococcus pneumoniae serotype 6A | Streptococcus pneumoniae type 6B 415618008 | Streptococcus pneumoniae serogroup 6 | Streptococcus pneumoniae type 7F 103499000 | Streptococcus pneumoniae serotype 7F | Streptococcus pneumoniae type 8 418759005 | Streptococcus pneumoniae serotype 8 | Streptococcus pneumoniae type 9N 103500009 | Streptococcus pneumoniae serotype 9N | Streptococcus pneumoniae type 9V 418322006 | Streptococcus pneumoniae serotype 9V | Streptococcus porcinus 59512008 | Streptococcus porcinus | Streptococcus pyogenes 80166006 | Streptococcus pyogenes | Streptococcus pyogenes Biotype 1 428854005 | Streptococcus pyogenes type emm1 | Streptococcus pyogenes Biotype 12 428793005 | Streptococcus pyogenes type emm12 | Streptococcus pyogenes Biotype 2 428238003 | Streptococcus pyogenes type emm2 | Streptococcus pyogenes Biotype 3 442813002 | Streptococcus pyogenes type emm3 | Streptococcus pyogenes Biotype 4 427822003 | Streptococcus pyogenes type emm4 | Streptococcus pyogenes Biotype 5 429336006 | Streptococcus pyogenes type emm5 | Streptococcus rattus 10667007 | Streptococcus ratti | Streptococcus salivarius 39888004 | Streptococcus salivarius | Streptococcus salivarius (Viridans Group) 127537007 | Streptococcus salivarius group | STREPTOCOCCUS SANGUINIS 113993000 | Streptococcus sanguinis |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Streptococcus sanguis (S.sanguis I) 115658008 | Streptococcus sanguis group | Streptococcus sinensis 438909001 | Streptococcus sinensis | Streptococcus sobrinus 43777007 | Streptococcus sobrinus | Streptococcus sp. (alpha-haemolytic) 302608002 | Alpha non-hemolytic streptococcus | Streptococcus sp. (beta-haemolytic) 53490009 | Beta-haemolytic streptococcus | Streptococcus species 116501009 | Streptococcus species | Streptococcus suis 7912006 | Streptococcus suis | Streptococcus thermophilus 23310006 | Streptococcus salivarius subsp. thermophilus | Streptococcus thoraltensis 113997004 | Streptococcus thoraltensis | Streptococcus uberis 13250005 | Streptococcus uberis | Streptococcus urinalis 438228001 | Streptococcus urinalis | Streptococcus vestibularis 113998009 | Streptococcus vestibularis | Streptomyces albidoflavus 430964005 | Streptomyces albidoflavus | Streptomyces albus 114001000 | Streptomyces albus | Streptomyces anulatus 113999001 | Streptomyces anulatus | Streptomyces ardus 439639002 | Streptomyces ardus | Streptomyces argenteolus 438844003 | Streptomyces argenteolus | Streptomyces bikiniensis 438930005 | Streptomyces bikiniensis | Streptomyces candidus 438237001 | Streptomyces candidus | STREPTOMYCES CAVOURENSIS 439655009 | Streptomyces cavourensis | Streptomyces clavuligerus 438736009 | Streptomyces clavuligerus | Streptomyces griseus 114000004 | Streptomyces griseus | Streptomyces lavendulae 114003002 | Streptomyces lavendulae | Streptomyces lincolnensis 437827000 | Streptomyces lincolnensis | Streptomyces paraguayensis 6586003 | Streptomyces paraguayensis | Streptomyces rimosus 114004008 | Streptomyces rimosus | Streptomyces roseosporus 438231000 | Streptomyces filamentosus | Streptomyces somaliensis 11007001 | Streptomyces somaliensis | Streptomyces species 131364009 | Streptomyces species | Streptomyces spectabilis 438852000 | Streptomyces spectabilis | Streptomyces thermovulgaris 437780007 | Streptomyces thermovulgaris | Streptomyces venezuelae 66591004 | Streptomyces venezuelae | Streptomyces violaceusniger 438042003 | Streptomyces violaceusniger | Streptomycetaceae 409840004 | Streptomycetaceae | Strongyloides fuelleborni 59422004 | Strongyloides fuelleborni | Strongyloides species 372352006 | Strongyloides species | Strongyloides stercoralis 42625000 | Strongyloides stercoralis | Succinivibrio dextrinosolvens 63902002 | Succinivibrio dextrinosolvens | Succinivibrio species 131366006 | Succinivibrio species | Succinivibrionaceae 425925004 | Succinivibrionaceae | Sutterella wadsworthensis 417645005 | Sutterella wadsworthensis | Suttonella indologenes 116392009 | Suttonella indologenes | Suttonella species 116393004 | Suttonella species | Syncephalastrum racemosum 243426002 | Syncephalastrum racemosum | Syncephalastrum sp 62678005 | Syncephalastrum | Synergistes 441021006 | Synergistes | Taenia multiceps 51902008 | Multiceps multiceps | Taenia saginata 61085008 | Taenia saginata | Taenia solium 17966003 | Taenia solium | Taenia sp. 372354007 | Taenia species | Tatlockia species 116381008 | Tatlockia species | Tatumella ptyseos 1546007 | Tatumella ptyseos | Tatumella sp. 131294000 | Tatumella species | Thermoactinomyces intermedius 79939006 | Thermoactinomyces intermedius | Thermoactinomyces species 131368007 | Thermoactinomyces species | Thermoactinomycetaceae 409841000 | Thermoactinomycetaceae | Tissierella species 131369004 | Tissierella species | Togavirus 129231002 | Togaviridae | Torula herbarum 89912005 | Torula | Torulopsis inconspicua 283871001 | Candida inconspicua | Torulopsis pintolopesii 283870000 | Candida pintolopesii | Torulopsis sp. 47931009 | Torulopsis candida | Toxocara canis 88857009 | Toxocara canis | Toxocara cati 36283001 | Toxocara cati | Toxocara sp. 39091000 | Toxocara | Toxoplasma gondii 4649006 | Toxoplasma gondii | Toxoplasma species 372359002 | Toxoplasma species | Trabulsiella guamensis 243309007 | Trabulsiella guamensis | Tremellales 427383002 | Tremellales | Treponema amylovorum 114008006 | Treponema amylovorum | Treponema carateum 14562002 | Treponema carateum | Treponema denticola 4099006 | Treponema denticola | Treponema lecithinolyticum 440317001 | Treponema lecithinolyticum | Treponema maltophilum 114009003 | Treponema maltophilum | Treponema medium 114010008 | Treponema medium | Treponema minutum 3636009 | Treponema minutum | Treponema pallidum 72904005 | Treponema pallidum | Treponema paraluiscuniculi 42036006 | Treponema paraluiscuniculi | Treponema parvum 439616008 | Treponema parvum | Treponema pectinovorum 12829000 | Treponema pectinovorum | Treponema pertenue 6246005 | Treponema pallidum ss. pertenue | Treponema phagedenis 82402007 | Treponema phagedenis | Treponema putidum 439663005 | Treponema putidum | Treponema refringens 17005004 | Treponema refringens | Treponema socranskii 12100004 | Treponema socranskii |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Treponema sp. 125047004 | Treponema species | Treponema vincentii 47474000 | Treponema vincentii | Trichinella species 372360007 | Trichinella species | Trichinella spiralis 16439004 | Trichinella spiralis | Trichocomaceae 426445009 | Trichocomaceae | Trichoderma harzianum 415971005 | Trichoderma harzianum | Trichoderma sp. 83597000 | Trichoderma | Trichoderma viride 61143007 | Trichoderma viride | Trichomonas hominis 89011000 | Pentatrichomonas hominis | Trichomonas sp. 372361006 | Trichomonas species | Trichomonas tenax 12549002 | Trichomonas tenax | Trichomonas vaginalis 22417000 | Trichomonas vaginalis | Trichophyton ajelloi 50775005 | Trichophyton ajelloi | Trichophyton concentricum 5389000 | Trichophyton concentricum | Trichophyton equinum 80707008 | Trichophyton equinum | Trichophyton erinacei 1885007 | Trichophyton mentagrophytes var. erinacei | Trichophyton georgiae 44240008 | Trichophyton georgiae | TRICHOPHYTON INTERDIGITALE 76040007 | Trichophyton mentagrophytes var. interdigitale | Trichophyton megninii 76479006 | Trichophyton megninii | Trichophyton mentagrophytes 55766005 | Trichophyton mentagrophytes | Trichophyton mentagrophytes var. mentagrophytes 37092004 | Trichophyton mentagrophytes var. mentagrophytes | Trichophyton mentagrophytes var. quinckeanum 72502004 | Trichophyton mentagrophytes var. quinckeanum | TRICHOPHYTON RUBRUM 372008 | Trichophyton rubrum | Trichophyton schoenleinii 56075008 | Trichophyton schoenleinii | Trichophyton simii 59516006 | Trichophyton simii | TRICHOPHYTON SOUDANENSE 4983002 | Trichophyton soudanense | Trichophyton species 372362004 | Trichophyton species | Trichophyton terrestre 86554002 | Trichophyton terrestre | Trichophyton tonsurans 71495007 | Trichophyton tonsurans | TRICHOPHYTON VERRUCOSUM 26601004 | Trichophyton verrucosum | TRICHOPHYTON VIOLACEUM 67490006 | Trichophyton violaceum | Trichosporon asahii 243475001 | Trichosporon asahii | TRICHOSPORON BEIGELII 39268007 | Trichosporon beigelii | Trichosporon inkin 243547001 | Sarcinosporon inkin | TRICHOSPORON MUCOIDES 243478004 | Trichosporon mucoides | TRICHOSPORON PULLULANS 25783003 | Trichosporon pullulans | Trichosporon sp. 62289009 | Trichosporon | Trichostrongylus sp. 372363009 | Trichostrongylus species | Trichothecium roseum 18236002 | Trichothecium roseum | Trichothecium sp. 115999004 | Trichothecium species | Trichuria trichiura 41744001 | Trichuris tenuis | Trichuris species 372364003 | Trichuris species | Trichuris trichiura 5378007 | Trichuris trichiura | Tropheryma whippelii 417060007 | Tropheryma whipplei | Trophozoites 110389002 | Entamoeba histolytica trophozoites | Trypanosoma brucei 243659009 | Trypanosoma brucei | Trypanosoma cruzi 88274000 | Trypanosoma cruzi | Trypanosoma sp. 372366001 | Trypanosoma species | Tsukamurella inchonensis 113509000 | Tsukamurella inchonensis | Tsukamurella pulmonis 113511009 | Tsukamurella pulmonis | Tsukamurella sp. 131226009 | Tsukamurella species | Tsukamurella strandjordii 417316004 | Tsukamurella strandjordii | Tsukamurella tyrosinosolvens 113512002 | Tsukamurella tyrosinosolvens | Tsukamurellaceae 409845009 | Tsukamurellaceae | Turicella (Corynebacterium) sp. 415762009 | Turicella | TURICELLA OTITIDIS 415763004 | Turicella otitidis | Turicibacter sanguinis 440839009 | Turicibacter sanguinis | Unclassified virus 6596007 | Unclassified virus | Unidentified AFB (?Nocardia-like) 243365003 | Acid-fast bacillus | Unidentified Anaerobic Gram Negative Bacillus 243386003 | Anaerobic Gram-negative bacillus | Unidentified Anaerobic Gram Pos Bac (?Clostridium) 243398008 | Anaerobic Gram-positive bacillus | Unidentified dermatophyte 115651002 | Dermatophyte | Unidentified Gram Negative Coccobacillus 53932007 | Gram-negative coccobacillus | Ureaplasma parvum 438391000 | Ureaplasma parvum | Ureaplasma species 131371004 | Ureaplasma species | UREAPLASMA UREALYTICUM 12006007 | Ureaplasma urealyticum | Vaccinia 13126002 | Vaccinia virus | Vagococcus sp. 116417000 | Vagococcus species | Vancomycin intermediate Staphylococcus aureus 406962002 | Vancomycin intermediate Staphylococcus aureus | Vancomycin resistant Enterococcus 113727004 | Vancomycin resistant enterococcus | Vancomycin resistant Staphylococcus aureus 404680007 | Vancomycin resistant Staphylococcus aureus | Varibaculum cambriense 428140000 | Varibaculum cambriense | Varicella Zoster Virus 19551004 | Human herpesvirus 3 | Variola 243568000 | Variola virus | Variola Major Virus 312410004 | Variola major virus | Variola Minor Virus 312411000 | Variola minor virus | Variovorax paradoxus 114050006 | Variovorax paradoxus | Variovorax species 131388006 | Variovorax species | Veillonella atypica 21633009 | Veillonella atypica | Veillonella caviae 63486005 | Veillonella caviae | Veillonella criceti 77243008 | Veillonella criceti | Veillonella dispar 29564004 | Veillonella dispar | Veillonella montpellierensis 438330001 | Veillonella montpellierensis | VEILLONELLA PARVULA 90435009 | Veillonella parvula | Veillonella rodentium 78654008 | Veillonella rodentium |

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RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1 Source Organism names provided by working group members SNOMED CT MAPPING Veillonella species 116420008 | Veillonella species | Venezuelan Equine Encephalomyelitis Virus 62958000 | Venezuelan equine encephalomyelitis virus | Veronaea botryosa 415976000 | Veronaea botryosa | Verticillium sp. 50734003 | Verticillium | VIBRIO ALGINOLYTICUS 45749000 | Vibrio alginolyticus | Vibrio carchariae 84003007 | Vibrio harveyi | VIBRIO CHOLERAE 75953000 | Vibrio cholerae | Vibrio cholerae non-O1 398506000 | Vibrio cholerae, non-O1 | Vibrio cholerae non-O1/non-O139 415819003 | Vibrio cholerae, non-O1/non-O139 | Vibrio cholerae O1 62987004 | Vibrio cholerae, O1 | Vibrio cholerae O1 Hikojima bv classical 302577003 | Vibrio cholerae O1 classical Hikojima | Vibrio cholerae O1 Hikojima bv Eltor 302574005 | Vibrio cholerae O1 El Tor Hikojima | Vibrio cholerae O1 Inaba bv classical 302575006 | Vibrio cholerae O1 classical Inaba | Vibrio cholerae O1 Inaba bv El Tor 302572009 | Vibrio cholerae O1 El Tor Inaba | Vibrio cholerae O1 Ogawa bv classical 302576007 | Vibrio cholerae O1 classical Ogawa | Vibrio cholerae O1 Ogawa bv El Tor 302573004 | Vibrio cholerae O1 El Tor Ogawa | Vibrio cholerae O139 125048009 | Vibrio cholerae serogroup O:139 | Vibrio cincinnatiensis 36764009 | Vibrio cincinnatiensis | Vibrio damsela 387799003 | Photobacterium damselae subsp damselae | Vibrio fischeri 115050000 | Photobacterium fischeri | Vibrio fluvialis 43199008 | Vibrio fluvialis | Vibrio furnissii 6387008 | Vibrio furnissii | Vibrio metschnikovii 28382009 | Vibrio metschnikovii | Vibrio mimicus 11776003 | Vibrio mimicus | Vibrio parahaemolyticus 11736008 | Vibrio parahaemolyticus | Vibrio sp. 131373001 | Vibrio species | VIBRIO VULNIFICUS 55905000 | Vibrio vulnificus | Virus 49872002 | Virus | Wangiella sp. 70200002 | Wangiella | Wautersia paucula 415834009 | Wautersia | Weeksella sp. 131374007 | Weeksella species | Weeksella virosa 83326004 | Weeksella virosa | Weissella confusa 113639001 | Weissella confusa | Weissella species 131252003 | Weissella species | West Nile Virus 57311007 | West Nile virus | Wolinella sp. 131375008 | Wolinella species | Wuchereria bancrofti 84925004 | Wuchereria bancrofti | Xanthomonadaceae 414228002 | Xanthomonadaceae | Xanthomonas campestris 25105001 | Xanthomonas campestris | Xanthomonas species 131376009 | Xanthomonas species | Yarrowia lipolytica 63775007 | Candida lipolytica | YEAST 62093005 | Yeast | Yellow Fever Virus 26630006 | Yellow fever virus | Yellow Fever Virus Group 407538006 | Yellow Fever virus group | Yersinia aldovae 91246002 | Yersinia aldovae | Yersinia bercovieri 103434007 | Yersinia bercovieri | YERSINIA ENTEROCOLITICA 65255000 | Yersinia enterocolitica | Yersinia enterocolitica O:1,2a,3 Bio 3 415855006 | Yersinia enterocolitica serogroup O:1,2a,3 | Yersinia enterocolitica O:13a,13b Bio 1B 415857003 | Yersinia enterocolitica serogroup O:13a,13b | Yersinia enterocolitica O:14 Bio 1A 428139002 | Yersinia enterocolitica, serogroup O:14 | Yersinia enterocolitica O:19,36 Bio 3 415858008 | Yersinia enterocolitica serogroup O:19 | Yersinia enterocolitica O:20 Bio 1B 415859000 | Yersinia enterocolitica serogroup O:20 | Yersinia enterocolitica O:21 Bio 1A 415860005 | Yersinia enterocolitica serogroup O:21 | Yersinia enterocolitica O:3 Bio 1A 103430003 | Yersinia enterocolitica serogroup O:3 | Yersinia enterocolitica O:4,32 Bio 1B 415862002 | Yersinia enterocolitica serogroup O:4,32 | Yersinia enterocolitica O:5 Bio 1A 103431004 | Yersinia enterocolitica serogroup O:5 | Yersinia enterocolitica O:5,27 Bio 2 415863007 | Yersinia enterocolitica serogroup O:5, 27 | Yersinia enterocolitica O:8 Bio 1B 103432006 | Yersinia enterocolitica serogroup O:8 | Yersinia enterocolitica O:9 Bio 2 103433001 | Yersinia enterocolitica serogroup O:9 | Yersinia frederiksenii 85159008 | Yersinia frederiksenii | Yersinia intermedia 10334001 | Yersinia intermedia | Yersinia kristensenii 91042006 | Yersinia kristensenii | Yersinia mollaretii 103435008 | Yersinia mollaretii | Yersinia pestis 54365000 | Yersinia pestis | Yersinia pseudotuberculosis 90530002 | Yersinia pseudotuberculosis | Yersinia rhodei 87145000 | Yersinia rohdei | Yersinia ruckeri 64125009 | Yersinia ruckeri | Yersinia species 131295004 | Yersinia species | Yokenella regensburgei 89477001 | Yokenella regensburgei | Yokenella species 131296003 | Yokenella species | Zygomycetes 1582002 | Zygomycetes |

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