Efficacy of Excision, Cauterization, and Fungicides for Management of Apple Anthracnose Canker in Maritime Climate
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Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Three New Species and a New Combination Of
A peer-reviewed open-access journal MycoKeys 60: 1–15 (2019) News species of Triblidium 1 doi: 10.3897/mycokeys.60.46645 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research Three new species and a new combination of Triblidium Tu Lv1, Cheng-Lin Hou1, Peter R. Johnston2 1 College of Life Science, Capital Normal University, Xisanhuanbeilu 105, Haidian, Beijing 100048, China 2 Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1142, New Zealand Corresponding author: Cheng-Lin Hou ([email protected]) Academic editor: D.Haelewaters | Received 17 September 2019 | Accepted 18 October 2019 | Published 31 October 2019 Citation: Lv T, Hou C-L, Johnston PR (2019) Three new species and a new combination of Triblidium. MycoKeys 60: 1–15. https://doi.org/10.3897/mycokeys.60.46645 Abstract Triblidiaceae (Rhytismatales) currently consists of two genera: Triblidium and Huangshania. Triblidium is the type genus and is characterised by melanized apothecia that occur scattered or in small clusters on the substratum, cleistohymenial (opening in the mesohymenial phase), inamyloid thin-walled asci and hyaline muriform ascospores. Before this study, only the type species, Triblidium caliciiforme, had DNA sequences in the NCBI GenBank. In this study, six specimens of Triblidium were collected from China and France and new ITS, mtSSU, LSU and RPB2 sequences were generated. Our molecular phylogenetic analysis and morphological study demonstrated three new species of Triblidium, which are formally de- scribed here: T. hubeiense, T. rostriforme and T. yunnanense. Additionally, our results indicated that Huang- shania that was considered to be distinct from Triblidium because of its elongated, transversely-septate ascospores, is congeneric with Triblidium. -
Phylogeny of Pezicula, Dermea and Neofabraea Inferred from Partial Sequences of the Nuclear Ribosomal RNA Gene Cluster Author(S): Edwin C
Mycological Society of America Phylogeny of Pezicula, Dermea and Neofabraea Inferred from Partial Sequences of the Nuclear Ribosomal RNA Gene Cluster Author(s): Edwin C. A. Abeln, Marian A. de Pagter, Gerard J. M. Verkley Reviewed work(s): Source: Mycologia, Vol. 92, No. 4 (Jul. - Aug., 2000), pp. 685-693 Published by: Mycological Society of America Stable URL: http://www.jstor.org/stable/3761426 . Accessed: 06/11/2011 14:32 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. Mycological Society of America is collaborating with JSTOR to digitize, preserve and extend access to Mycologia. http://www.jstor.org Mycologia, 92(4), 2000, pp. 685-693. © 2000 by The Mycological Society of America, Lawrence, KS 66044-8897 Phylogeny of Pezicula, Dermea and Neofabraea inferred from partial sequences of the nuclear ribosomal RNA gene cluster Edwin C. A. Abeln1 resulted in a rather artificial host-based classification. Marian A. de Pagter (Wollenweber 1939). Gerard J. M. Verkley Traditionally, material on conifers is identified as Centraalbureauvoor Schimmelcultures,PO. Box 273, Pe. livida and morphologically similar material on de- 3740 AG Baarn, The Netherlands ciduous trees as Pe. cinnamomea. Kowalski and Kehr (1992) reported the presence of Pe. -
Mycosphere Notes 169–224 Article
Mycosphere 9(2): 271–430 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/2/8 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere notes 169–224 Hyde KD1,2, Chaiwan N2, Norphanphoun C2,6, Boonmee S2, Camporesi E3,4, Chethana KWT2,13, Dayarathne MC1,2, de Silva NI1,2,8, Dissanayake AJ2, Ekanayaka AH2, Hongsanan S2, Huang SK1,2,6, Jayasiri SC1,2, Jayawardena RS2, Jiang HB1,2, Karunarathna A1,2,12, Lin CG2, Liu JK7,16, Liu NG2,15,16, Lu YZ2,6, Luo ZL2,11, Maharachchimbura SSN14, Manawasinghe IS2,13, Pem D2, Perera RH2,16, Phukhamsakda C2, Samarakoon MC2,8, Senwanna C2,12, Shang QJ2, Tennakoon DS1,2,17, Thambugala KM2, Tibpromma, S2, Wanasinghe DN1,2, Xiao YP2,6, Yang J2,16, Zeng XY2,6, Zhang JF2,15, Zhang SN2,12,16, Bulgakov TS18, Bhat DJ20, Cheewangkoon R12, Goh TK17, Jones EBG21, Kang JC6, Jeewon R19, Liu ZY16, Lumyong S8,9, Kuo CH17, McKenzie EHC10, Wen TC6, Yan JY13, Zhao Q2 1 Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, P.R. China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 A.M.B. Gruppo Micologico Forlivese ‘‘Antonio Cicognani’’, Via Roma 18, Forlı`, Italy 4 A.M.B. Circolo Micologico ‘‘Giovanni Carini’’, C.P. 314, Brescia, Italy 5 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, P.R. China 6 Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of national education Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, P.R. -
AR TICLE Lessons Learned from Moving to One
IMA FUNGUS · VOLUME 5 · A%/BB$DE./%F/B/%%/ [ ARTICLE #G <HH=K<L#9#G<%/5//O#&O&H./P/BK<#S9A#GT & ! With the changes implemented in the International Code of Nomenclature for algae, fungi and plants, fungi "#$ &[#[ Clonostachys * Nomenclature *6*[ V [&* V= !U * &&[ K !*+ (AEE*E)#Clonostachys <APH./%FS#A.5H./%FSVA%8X./%F INTRODUCTION [ # With the changes implemented in the International Code #*& of Nomenclature for algae, fungi and plants (ICN; McNeill [6 et al. 2012), fungi may no longer have more than one Chalara [!" that “…for a taxon of non- fraxinea 7 et al .//8 9 lichen-forming Ascomycota and Basidiomycota… [all names] *&<* compete for priority” regardless of their particular morph & [ Hymenoscyphus #$%#&only albidus [ H. pseudoalbidus (Queloz & !" [ et al. ./%%# [ * '& * & * ' !" principle of priority does not contribute to the nomenclatural [Chalara stability of fungi, thus exceptions can and should be made to fraxinea .//8 H. pseudoalbidus 2011, must become '[ #[ species? in Hypocreales (Rossman et al. 2013) and Leotiomycetes + (Johnston et al. 2014), I have noticed a number of issues, * * !" species of Chalara is C. fusidioides + Hymenoscyphus is H. fructigenus= [!"[ of these type species, one sees that C. fusidioides and H. The Code Decoded: a user’s guide to fructigenus the International Code of Nomenclature for algae, fungi, and presented by Réblová et al. ./%% plants./%5&!" in one genus, then most Leotiomycetes [ Chalara and Hymenoscyphus ' [ sexual state and others for one or more asexual states, one 6>@et al. (2012) © 2014 International Mycological Association You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: [ Non-commercial: No derivative works: For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. -
Tree Disease Identification: Cankers, Wilts, and Stem Decays
Tree Disease Identification Stem and Branch 1: Cankers & Phytophthora diseases Marianne Elliott Plant Pathologist WSU Puyallup Research and Extension Center Invasive plant diseases Fungi Oomycetes • Chestnut blight • Phytophthora cinnamomi root (Cryphonectria disease parasitica) on American chestnut • Port Orford cedar root disease (P. lateralis) • White pine blister rust • Sudden oak death and (Cronartium ribicola) on Ramorum blight (P. ramorum) Western white pine on tanoak, oak, larch, many more. • Dutch elm disease (Ophiostoma ulmi) on American elm These are capable of eliminating certain Chestnut blight caused by the fungus host species from an ecosystem Cryphonectria parasitica Stem and branch diseases 1 • Cankers • Wetwood • Phytophthora • Management of canker diseases Cankers • Localized necrosis of the bark and cambium on stems, branches or twigs caused by fungi, bacteria, or abiotic agents. • Often centered around a wound or branch stub Cankers on Pacific madrone stem Types of Cankers • Annual • Perennial or Target • Diffuse Perennial or “target” canker caused by Nectria spp. Annual canker caused by Fusarium spp. Diffuse canker caused by Endothia parasitica (chestnut blight) Typical life cycle of canker fungi http://nysipm.cornell.edu/factsheets/treefruit/diseases/pc/pc_cycle.gif Nectria canker Tree hosts: Hardwood - maple, apple, pear, plum, alder, oak Conifer- true firs, spruce, pine Shrubs: rhododendron, hydrangea, daphne Many others “Target” canker on alder Nectria canker • Asexual stage: Nectria cinnabarina, Neonectria galligena, -
Evolution of Helotialean Fungi (Leotiomycetes, Pezizomycotina): a Nuclear Rdna Phylogeny
Molecular Phylogenetics and Evolution 41 (2006) 295–312 www.elsevier.com/locate/ympev Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): A nuclear rDNA phylogeny Zheng Wang a,¤, Manfred Binder a, Conrad L. Schoch b, Peter R. Johnston c, Joseph W. Spatafora b, David S. Hibbett a a Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA b Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA c Herbarium PDD, Landcare Research, Private bag 92170, Auckland, New Zealand Received 5 December 2005; revised 21 April 2006; accepted 24 May 2006 Available online 3 June 2006 Abstract The highly divergent characters of morphology, ecology, and biology in the Helotiales make it one of the most problematic groups in traditional classiWcation and molecular phylogeny. Sequences of three rDNA regions, SSU, LSU, and 5.8S rDNA, were generated for 50 helotialean fungi, representing 11 out of 13 families in the current classiWcation. Data sets with diVerent compositions were assembled, and parsimony and Bayesian analyses were performed. The phylogenetic distribution of lifestyle and ecological factors was assessed. Plant endophytism is distributed across multiple clades in the Leotiomycetes. Our results suggest that (1) the inclusion of LSU rDNA and a wider taxon sampling greatly improves resolution of the Helotiales phylogeny, however, the usefulness of rDNA in resolving the deep relationships within the Leotiomycetes is limited; (2) a new class Geoglossomycetes, including Geoglossum, Trichoglossum, and Sarcoleo- tia, is the basal lineage of the Leotiomyceta; (3) the Leotiomycetes, including the Helotiales, Erysiphales, Cyttariales, Rhytismatales, and Myxotrichaceae, is monophyletic; and (4) nine clades can be recognized within the Helotiales. -
Neofabraea Brasiliensis Fungal Planet Description Sheets 309
308 Persoonia – Volume 35, 2015 Neofabraea brasiliensis Fungal Planet description sheets 309 Fungal Planet 391 – 4 December 2015 Neofabraea brasiliensis Sanhueza & Bogo, sp. nov. Etymology. Name reflects the location where original isolates were col- ITS and β-tubulin II sequences — Sequence data for tub2 lected. and ITS retrieved from GenBank was reviewed for all avail- Classification — Dermateaceae, Helotiales, Leotiomycetes. able strains with more than 88 % homology for ITS and 82 % for tub2. Including the sequences generated in this study, this Conidiogenous cells straight or sinuous, 8–14 × 3–5 µm, more amounted to 343 available strains for the ITS region and 108 or less cylindrical, tapering to narrow apex; usually held on ir- strains for tub2. Strains with sequences available for both regularly branched conidiophores, sometimes arising directly regions were selected for phylogenetic analyses and only from hyphae, sometimes with acropleurogenous conidiogenous the sequences belonging to the Neofabraea genus concept loci. Macroconidia 12–22 × 2.5–3.7 µm, aseptate, oblong- were kept, including those Cryptosporiopsis species that were ellipsoidal, apex rounded to more or less pointed, base slightly recently introduced as new combinations for Neofabraea. The conical. Microconidia mostly 2.5–3.5 × 1–1.5 µm, ellipsoidal to two regions were then concatenated into a single dataset in oblong-ellipsoidal, base slightly conical then truncated; micro- the order of ITS–tub2. Pezicula cinnamomea and Pezicula conidia can be produced in conidial masses with a white, cot- corticola were included as the outgroup. There were 55 strains tony appearance. available to be included in the concatenated alignment including Culture characteristics — Colonies on MA, PDA and V8 are the outgroup; once the identical sequences were removed this 28, 31 and 32 mm diam, respectively, after 15 d at 22 °C. -
Dominated Forest Plot in Southern Ontario and the Phylogenetic Placement of a New Ascomycota Subphylum
Above and Below Ground Fungal Diversity in a Hemlock- Dominated Forest Plot in Southern Ontario and the Phylogenetic Placement of a New Ascomycota Subphylum by Teresita Mae McLenon-Porter A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto © Copyright by Teresita Mae McLenon-Porter 2008 Above and below ground fungal diversity in a Hemlock- dominated forest plot in southern Ontario and the phylogenetic placement of a new Ascomycota subphylum Teresita Mae McLenon-Porter Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto 2008 General Abstract The objective of this thesis was to assess the diversity and community structure of fungi in a forest plot in Ontario using a variety of field sampling and analytical methods. Three broad questions were addressed: 1) How do different measures affect the resulting view of fungal diversity? 2) Do fruiting bodies and soil rDNA sampling detect the same phylogenetic and ecological groups of Agaricomycotina? 3) Will additional rDNA sampling resolve the phylogenetic position of unclassified fungal sequences recovered from environmental sampling? Generally, richness, abundance, and phylogenetic diversity (PD) correspond and identify the same dominant fungal groups in the study site, although in different proportions. Clades with longer branch lengths tend to comprise a larger proportion of diversity when assessed using PD. Three phylogenetic-based comparisons were found to be variable in their ability to ii detect significant differences. Generally, the Unifrac significance measure (Lozupone et al., 2006) is the most conservative, followed by the P-test (Martin, 2002), and Libshuff library comparison (Singleton et al., 2001) with our dataset. -
Neofabraea Actinidiae in New Zealand Kiwifruit Orchards: Current Status and Knowledge Gaps
Kiwifruit pathogens 75 Neofabraea actinidiae in New Zealand kiwifruit orchards: current status and knowledge gaps Joy L. Tyson*, Michael A. Manning, Kerry R. Everett and Robert A. Fullerton e New Zealand Institute for Plant and Food Research Limited, Private Bag 92169, Auckland, 1142, New Zealand * Corresponding author: [email protected] Abstract Neofabraea actinidiae (syn. Cryptosporiopsis actinidiae) is a member of a suite of fungi associated with ‘ripe rots’ of kiwifruit. Although it has been recorded regularly from kiwifruit in New Zealand over the past 30–40 years, initially as ‘Cryptosporiopsis sp.’, there is a general lack of knowledge of this fungus. This paper provides a review of the current records and available literature on the taxonomy and biology of the organism, and assesses the knowledge gaps in the disease cycle and epidemiology of N. actinidiae in kiwifruit orchards. The conidia of the fungus are likely to be water borne, infect fruit during or near to flowering, and remain latent until harvest and subsequent ripening. The source of inoculum remains unknown. This review may stimulate new research into this pathogen and give insights into potential control strategies. Keywords Actinidia, Cryptosporiopsis, host range, epidemiology INTRODUCTION vegetative compatibility groups (VCG) in the N. Neofabraea actinidiae (syn. Cryptosporiopsis actinidiae anamorph using nitrate non-utilising actinidiae) is a member of a suite of fungi (Nit) mutants, finding 18 groups from 28 strains. associated with ‘ripe rots’ of kiwifruit (Actinidia The authors concluded that this was consistent spp.). It was first recorded in New Zealand with the re-assortment of five VCG genes during as Myxosporium sp. -
A Review of the Literature of the Neofabraea Species Complex, Causative Agents of Gloeosporium Rot in Stored Apple
A review of the literature of the Neofabraea species complex, causative agents of Gloeosporium rot in stored apple Robert Saville, East Malling Research, East Malling, Kent, ME19 6BJ Apples are stored for up to 12 months following harvest and are subject to attack from numerous post- harvest pathogens. Neofabraea species are considered an important post-harvest disease worldwide and losses of up to 35% have been reported for this disease (Sutton et al., 2014). An apple rot survey of UK pac houses undertaken from 2008 - 2013 as part of Horticultural Development Company (HDC) projects TF193 and CP90, identified an increasing incidence in the occurrence of fruit rot caused by Neofabraea species in stored apples over the duration of the survey. On this basis the HDC commissioned this literature review of the fungus responsible and the current control options available, to inform future research into this disease. Figure 1. Left: Apple rot; Top right: Neofabraea alba colony morphology; Middle right: Neofabraea alba spores; Bottom right: N.perennans/N.malicorticis symptoms. Contents Section Page Importance of the fungus 1 The fungus 3 Neofabraea species identification ; a UK case study 8 Epidemiology 12 Host interactions 12 Control 13 Future research needs 15 Main points for growers 15 Acknowledgements 16 References 16 Importance of the fungus pollination Losses in store Neofabraea species can induce wood lesions on trees in the orchard but it is the post-harvest rot that develops in the store where the majority of losses due to this fungus are experienced. The fungus characteristically gains entry to developing fruit in the orchard through the lenticels and can remain latent for some time after harvest. -
Etiology and Management of Neofabraea Lenticel Decay (Bull's
Etiology and management of Neofabraea lenticel decay (bull’s eye rot) of apples in the Western Cape of South Africa by André Russouw Thesis presented in partial fulfilment of the requirements for the degree of Master of Science in the Faculty of AgriSciences at the University of Stellenbosch Supervisor: Dr C.L. Lennox Co-supervisor: Dr J.C. Meitz-Hopkins December 2019 Stellenbosch University https://scholar.sun.ac.za DECLARATION By submitting this thesis electronically, I declare that the entirety of the work contained therein is my own, original work, that I am the sole author thereof (save to the extent explicitly otherwise stated), that reproduction and publication thereof by Stellenbosch University will not infringe any third party rights and that I have not previously in its entirety or in part submitted it for obtaining any qualification. December 2019 André Russouw Copyright © 2019 Stellenbosch University All rights reserved i Stellenbosch University https://scholar.sun.ac.za SUMMARY Postharvest lenticel decay of apple and pear fruit caused by Neofabraea malicorticis, N. perennans. N. vagabunda and N. kienholzii is a disease more commonly known as Bull’s eye rot. In South Africa, only N. vagabunda has been identified to cause this disease on apple fruit in Western Cape apple orchards, especially on the late harvested cultivar ‘Cripps Pink’. The pathogen infects the lenticels of fruit in the orchard and disease symptoms only become visible months after harvest. Symptoms include decay spreading outward from an infected lenticel as concentric dark and light brown discoloured rings. This disease does not spread in postharvest storage and preharvest infections thus ultimately determine disease incidence.