Taxonomy, Nomenclature and Phylogeny of Three Cladosporium
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Vol1art2.Pdf
VOLUME 1 JUNE 2018 Fungal Systematics and Evolution PAGES 13–22 doi.org/10.3114/fuse.2018.01.02 Epitypification and re-description of the zombie-ant fungus, Ophiocordyceps unilateralis (Ophiocordycipitaceae) H.C. Evans1,2*, J.P.M. Araújo3, V.R. Halfeld4, D.P. Hughes3 1CAB International, UK Centre, Egham, Surrey, UK 2Departamentos de Entomologia e Fitopatologia, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil 3Departments of Entomology and Biology, Penn State University, University Park, Pennsylvania, USA 4Universidade Federal de Juiz de Fora, Juiz de Fora, Minas Gerais, Brazil *Corresponding author: [email protected] Key words: Abstract: The type of Ophiocordyceps unilateralis (Ophiocordycipitaceae, Hypocreales, Ascomycota) is based on an Atlantic rainforest immature specimen collected on an ant in Brazil. The host was identified initially as a leaf-cutting ant (Atta cephalotes, Camponotus sericeiventris Attini, Myrmicinae). However, a critical examination of the original illustration reveals that the host is the golden carpenter ants carpenter ant, Camponotus sericeiventris (Camponotini, Formicinae). Because the holotype is no longer extant and epitype the original diagnosis lacks critical taxonomic information – specifically, on ascus and ascospore morphology – a new Ophiocordyceps type from Minas Gerais State of south-east Brazil is designated herein. A re-description of the fungus is provided and phylogeny a new phylogenetic tree of the O. unilateralis clade is presented. It is predicted that many more species of zombie- ant fungi remain to be delimited within the O. unilateralis complex worldwide, on ants of the tribe Camponotini. Published online: 15 December 2017. Editor-in-Chief INTRODUCTIONProf. dr P.W. Crous, Westerdijk Fungal Biodiversity Institute, P.O. -
Hyphomycetes from the Great Smoky Mountains National Park, Including Three New Species
Fungal Diversity Hyphomycetes from the Great Smoky Mountains National Park, including three new species Huzefa A. Raja1, Alberto M. Stchigel2, Andrew N. Miller3*, J. L. Crane3, 1 and Carol A. Shearer 1Department of Plant Biology, University of Illinois, Urbana, Illinois 61801, USA. 2Unitat de Microbiologia, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain. 3Section for Biodiversity, Illinois Natural History Survey, Champaign, Illinois 61820-6970, USA. Raja, H.A., Stchigel, A.M., Miller, A.N., Crane, J.L. and Shearer, C.A. (2007). Hyphomycetes from the Great Smoky Mountains National Park, including three new species. Fungal Diversity 26: 271-286. As part of the All Taxa Biotic Inventory currently being conducted in the Great Smoky Mountains National Park, samples of woody debris in freshwater and terrestrial habitats as well as leaves and soil organic matter in terrestrial habitats were collected and studied to detect the presence of hyphomycetes. Sixty hyphomycetes are reported here, and three new species are described and illustrated. Eleven species are new records for the USA, and fifteen species are new records for the park. Key words: anamorph, fresh water, mitosporic, systematics, wood Introduction An All Taxa Biotic Inventory (ATBI) is currently underway in the Great Smoky Mountains National Park (GSMNP), USA. In conjunction with a non- profit organization, Discover Life In America (DLIA), the aim of the ATBI is to inventory all life forms in the park. Goals of the ATBI are to determine: 1) what species exist in the park; 2) where the species occur in the park; and, 3) the roles species play in the park ecosystems (Sharkey, 2001). -
Based on a Newly-Discovered Species
A peer-reviewed open-access journal MycoKeys 76: 1–16 (2020) doi: 10.3897/mycokeys.76.58628 RESEARCH ARTICLE https://mycokeys.pensoft.net Launched to accelerate biodiversity research The insights into the evolutionary history of Translucidithyrium: based on a newly-discovered species Xinhao Li1, Hai-Xia Wu1, Jinchen Li1, Hang Chen1, Wei Wang1 1 International Fungal Research and Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming 650224, China Corresponding author: Hai-Xia Wu ([email protected], [email protected]) Academic editor: N. Wijayawardene | Received 15 September 2020 | Accepted 25 November 2020 | Published 17 December 2020 Citation: Li X, Wu H-X, Li J, Chen H, Wang W (2020) The insights into the evolutionary history of Translucidithyrium: based on a newly-discovered species. MycoKeys 76: 1–16. https://doi.org/10.3897/mycokeys.76.58628 Abstract During the field studies, aTranslucidithyrium -like taxon was collected in Xishuangbanna of Yunnan Province, during an investigation into the diversity of microfungi in the southwest of China. Morpho- logical observations and phylogenetic analysis of combined LSU and ITS sequences revealed that the new taxon is a member of the genus Translucidithyrium and it is distinct from other species. Therefore, Translucidithyrium chinense sp. nov. is introduced here. The Maximum Clade Credibility (MCC) tree from LSU rDNA of Translucidithyrium and related species indicated the divergence time of existing and new species of Translucidithyrium was crown age at 16 (4–33) Mya. Combining the estimated diver- gence time, paleoecology and plate tectonic movements with the corresponding geological time scale, we proposed a hypothesis that the speciation (estimated divergence time) of T. -
On Corylus Avellana (Fagales) from Italy
Biodiversity Data Journal 8: e55957 doi: 10.3897/BDJ.8.e55957 Taxonomic Paper A new genus of Bambusicolaceae (Pleosporales) on Corylus avellana (Fagales) from Italy Subodini Nuwanthika Wijesinghe‡,§,|, Yong Wang ‡, Erio Camporesi¶, Dhanushka Nadeeshan Wanasinghe#, Saranyaphat Boonmee§,|, Kevin David Hyde§,#,¤ ‡ Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang, Guizhou Province, 550025, China § Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand | School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand ¶ A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy # CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China ¤ Innovative Institute of Plant Health, Zhongkai University of Agriculture and Engineering, Haizhu District, Guangzhou 510225, China Corresponding author: Yong Wang ([email protected]) Academic editor: Danny Haelewaters Received: 29 Jun 2020 | Accepted: 16 Jul 2020 | Published: 19 Aug 2020 Citation: Wijesinghe SN, Wang Y, Camporesi E, Wanasinghe DN, Boonmee S, Hyde KD (2020) A new genus of Bambusicolaceae (Pleosporales) on Corylus avellana (Fagales) from Italy. Biodiversity Data Journal 8: e55957. https://doi.org/10.3897/BDJ.8.e55957 Abstract Background In this study, we introduce Corylicola gen. nov. in the family of Bambusicolaceae (Pleosporales), to accommodate Corylicola italica sp. nov. The new species was isolated from dead branches of Corylus avellana (common hazel) in Italy. The discovery of this new genus with both sexual and asexual characters will contribute to expand the knowledge and taxonomic framework of Bambusicolaceae. New information Corylicola gen. nov. has similar morphological characters compared to other genera of Bambusicolaceae. -
Studies of the Laboulbeniomycetes: Diversity, Evolution, and Patterns of Speciation
Studies of the Laboulbeniomycetes: Diversity, Evolution, and Patterns of Speciation The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:40049989 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA ! STUDIES OF THE LABOULBENIOMYCETES: DIVERSITY, EVOLUTION, AND PATTERNS OF SPECIATION A dissertation presented by DANNY HAELEWATERS to THE DEPARTMENT OF ORGANISMIC AND EVOLUTIONARY BIOLOGY in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the subject of Biology HARVARD UNIVERSITY Cambridge, Massachusetts April 2018 ! ! © 2018 – Danny Haelewaters All rights reserved. ! ! Dissertation Advisor: Professor Donald H. Pfister Danny Haelewaters STUDIES OF THE LABOULBENIOMYCETES: DIVERSITY, EVOLUTION, AND PATTERNS OF SPECIATION ABSTRACT CHAPTER 1: Laboulbeniales is one of the most morphologically and ecologically distinct orders of Ascomycota. These microscopic fungi are characterized by an ectoparasitic lifestyle on arthropods, determinate growth, lack of asexual state, high species richness and intractability to culture. DNA extraction and PCR amplification have proven difficult for multiple reasons. DNA isolation techniques and commercially available kits are tested enabling efficient and rapid genetic analysis of Laboulbeniales fungi. Success rates for the different techniques on different taxa are presented and discussed in the light of difficulties with micromanipulation, preservation techniques and negative results. CHAPTER 2: The class Laboulbeniomycetes comprises biotrophic parasites associated with arthropods and fungi. -
Genomic Analysis of Ant Domatia-Associated Melanized Fungi (Chaetothyriales, Ascomycota) Leandro Moreno, Veronika Mayer, Hermann Voglmayr, Rumsais Blatrix, J
Genomic analysis of ant domatia-associated melanized fungi (Chaetothyriales, Ascomycota) Leandro Moreno, Veronika Mayer, Hermann Voglmayr, Rumsais Blatrix, J. Benjamin Stielow, Marcus Teixeira, Vania Vicente, Sybren de Hoog To cite this version: Leandro Moreno, Veronika Mayer, Hermann Voglmayr, Rumsais Blatrix, J. Benjamin Stielow, et al.. Genomic analysis of ant domatia-associated melanized fungi (Chaetothyriales, Ascomycota). Mycolog- ical Progress, Springer Verlag, 2019, 18 (4), pp.541-552. 10.1007/s11557-018-01467-x. hal-02316769 HAL Id: hal-02316769 https://hal.archives-ouvertes.fr/hal-02316769 Submitted on 15 Oct 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Mycological Progress (2019) 18:541–552 https://doi.org/10.1007/s11557-018-01467-x ORIGINAL ARTICLE Genomic analysis of ant domatia-associated melanized fungi (Chaetothyriales, Ascomycota) Leandro F. Moreno1,2,3 & Veronika Mayer4 & Hermann Voglmayr5 & Rumsaïs Blatrix6 & J. Benjamin Stielow3 & Marcus M. Teixeira7,8 & Vania A. Vicente3 & Sybren de Hoog1,2,3,9 Received: 20 August 2018 /Revised: 16 December 2018 /Accepted: 19 December 2018 # The Author(s) 2019 Abstract Several species of melanized (Bblack yeast-like^) fungi in the order Chaetothyriales live in symbiotic association with ants inhabiting plant cavities (domatia) or with ants that use carton-like material for the construction of nests and tunnels. -
Fungal Planet Description Sheets: 716–784 By: P.W
Fungal Planet description sheets: 716–784 By: P.W. Crous, M.J. Wingfield, T.I. Burgess, G.E.St.J. Hardy, J. Gené, J. Guarro, I.G. Baseia, D. García, L.F.P. Gusmão, C.M. Souza-Motta, R. Thangavel, S. Adamčík, A. Barili, C.W. Barnes, J.D.P. Bezerra, J.J. Bordallo, J.F. Cano-Lira, R.J.V. de Oliveira, E. Ercole, V. Hubka, I. Iturrieta-González, A. Kubátová, M.P. Martín, P.-A. Moreau, A. Morte, M.E. Ordoñez, A. Rodríguez, A.M. Stchigel, A. Vizzini, J. Abdollahzadeh, V.P. Abreu, K. Adamčíková, G.M.R. Albuquerque, A.V. Alexandrova, E. Álvarez Duarte, C. Armstrong-Cho, S. Banniza, R.N. Barbosa, J.-M. Bellanger, J.L. Bezerra, T.S. Cabral, M. Caboň, E. Caicedo, T. Cantillo, A.J. Carnegie, L.T. Carmo, R.F. Castañeda-Ruiz, C.R. Clement, A. Čmoková, L.B. Conceição, R.H.S.F. Cruz, U. Damm, B.D.B. da Silva, G.A. da Silva, R.M.F. da Silva, A.L.C.M. de A. Santiago, L.F. de Oliveira, C.A.F. de Souza, F. Déniel, B. Dima, G. Dong, J. Edwards, C.R. Félix, J. Fournier, T.B. Gibertoni, K. Hosaka, T. Iturriaga, M. Jadan, J.-L. Jany, Ž. Jurjević, M. Kolařík, I. Kušan, M.F. Landell, T.R. Leite Cordeiro, D.X. Lima, M. Loizides, S. Luo, A.R. Machado, H. Madrid, O.M.C. Magalhães, P. Marinho, N. Matočec, A. Mešić, A.N. Miller, O.V. Morozova, R.P. Neves, K. Nonaka, A. Nováková, N.H. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Ceramothyrium Chiangraiense, a Novel Species of Chaetothyriales (Eurotiomycetes) from Ficus Sp
Asian Journal of Mycology 2(1): 269–280 (2019) ISSN 2651-1339 www.asianjournalofmycology.org Article Doi 10.5943/ajom/2/1/17 Ceramothyrium chiangraiense, a novel species of Chaetothyriales (Eurotiomycetes) from Ficus sp. in Thailand Wijesinghe SN1,2, Dayarathne MC1,2,3, Maharachchikumbura SSN4, Wanasinghe 3 1,2,3 DN and Hyde KD 1 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2 School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3 Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 4 School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, People’s Republic of China Wijesinghe SN, Dayarathne MC, Maharachchikumbura SSN, Wanasinghe DN, Hyde KD 2019 – Ceramothyrium chiangraiense, a novel species of Chaetothyriales (Eurotiomycetes) from Ficus sp. in Thailand. Asian Journal of Mycology 2(1), 269–280, Doi 10.5943/ajom/2/1/17 Abstract In our investigation of epifoliar fungi, a novel species of Ceramothyrium; C. chiangraiense is isolated from the living leaves of Ficus sp. in Thailand. Genus Ceramothyrium is characterized by the ascomata covered with pellicle mycelium and the circumferential space around the maturing ascomata, bitunicate asci and phragmospores which lack setae. The new species resembles genus Ceramothyrium by its ascomata with superficial mycelial pellicle over the fruiting structures and scattered ascomata that cupulate when dry and 8-spored, bitunicate asci which contain hyaline, pluriseptate ascospores. We have processed the phylogeny based on Maximum Likelihood (ML) and Bayesian (BI) analyses using combined ITS and LSU sequence data. -
Fungal Foes: Presentations of Chromoblastomycosis Post–Hurricane Ike
Close enCounters With the environment Fungal Foes: Presentations of Chromoblastomycosis Post–Hurricane Ike Catherine E. Riddel, MD; Jamie G. Surovik, MD; Susan Y. Chon, MD; Wei-Lien Wang, MD; Jeong Hee Cho-Vega, MD, PhD; Jonathan Eugene Cutlan, MD; Victor Gerardo Prieto, MD, PhD hromoblastomycosis, also known as chromo- A Gomori methenamine-silver stain was positive mycosis, is a chronic cutaneous and subcuta- for fungal organisms. He returned 2 weeks later for Cneous mycotic infection caused by a family of definitive excision of the entire lesion. Pathology of dematiaceous fungi. These species are found in the the excised tissue confirmed pigmented fungal organ- soil and on a variety of plants, flowers, and wood, isms consistent with chromoblastomycosis with clear primarily in tropical and subtropical regions. Infec- surgical margins. The patient had no evidence of tion typically results from implantation of spores into recurrence at a follow-up visit 6 months later. the subcutaneous tissue following trauma from plants, The patient resided on 10 acres of land in thorns, or wood splinters. We describe 3 patients Plantersville, Texas, a rural area approximately with chromoblastomycosis who presented to the 55 miles northeast of Houston. He reported clear- dermatology department at TheCUTIS University of Texas ing brush and downed trees from his property after MD Anderson Cancer Center in Houston in the Hurricane Ike in September 2008 with multiple months following Hurricane Ike, which occurred in episodes of trauma to the skin. He reported travel to September 2008. the Caribbean and Hawaii prior to the appearance of the lesion; however, he did not note any particular Case Reports trauma to the area of skin during those travels. -
Black Fungal Extremes
Studies in Mycology 61 (2008) Black fungal extremes Edited by G.S. de Hoog and M. Grube CBS Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences Black fungal extremes STUDIE S IN MYCOLOGY 61, 2008 Studies in Mycology The Studies in Mycology is an international journal which publishes systematic monographs of filamentous fungi and yeasts, and in rare occasions the proceedings of special meetings related to all fields of mycology, biotechnology, ecology, molecular biology, pathology and systematics. For instructions for authors see www.cbs.knaw.nl. EXECUTIVE EDITOR Prof. dr Robert A. Samson, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] LAYOUT EDITOR S Manon van den Hoeven-Verweij, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Kasper Luijsterburg, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] SCIENTIFIC EDITOR S Prof. dr Uwe Braun, Martin-Luther-Universität, Institut für Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany. E-mail: [email protected] Prof. dr Pedro W. Crous, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Prof. dr David M. Geiser, Department of Plant Pathology, 121 Buckhout Laboratory, Pennsylvania State University, University Park, PA, U.S.A. 16802. E-mail: [email protected] Dr Lorelei L. Norvell, Pacific Northwest Mycology Service, 6720 NW Skyline Blvd, Portland, OR, U.S.A.