Gabriel Dover)
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Role of Hox Genes in Regulating Digit Patterning ROCÍO PÉREZ-GÓMEZ, ENDIKA HARO, MARC FERNÁNDEZ-GUERRERO, MARÍA F
Int. J. Dev. Biol. 62: 797-805 (2018) https://doi.org/10.1387/ijdb.180200mr www.intjdevbiol.com Role of Hox genes in regulating digit patterning ROCÍO PÉREZ-GÓMEZ, ENDIKA HARO, MARC FERNÁNDEZ-GUERRERO, MARÍA F. BASTIDA and MARÍA A. ROS* Instituto de Biomedicina y Biotecnología de Cantabria, CSIC–SODERCAN Universidad de Cantabria, Santander, Spain ABSTRACT The distal part of the tetrapod limb, the autopod, is characterized by the presence of digits. The digits display a wide diversity of shapes and number reflecting selection pressure for functional adaptation. Despite extensive study, the different aspects of digit patterning, as well as the factors and mechanisms involved are not completely understood. Here, we review the evidence implicating Hox proteins in digit patterning and the interaction between Hox genes and the Sonic hedgehog/Gli3 pathway, the other major regulator of digit number and identity. Currently, it is well accepted that a self-organizing Turing-type mechanism underlies digit patterning, this being understood as the establishment of an iterative arrangement of digit/interdigit in the hand plate. We also discuss the involvement of 5’ Hox genes in regulating digit spacing in the digital plate and therefore the number of digits formed in this self-organizing system. KEY WORDS: limb development, Hox gene, digit patterning, Shh, Gli3 Introduction and Meyer, 2015). The digits are crucial elements for the function of the limb. They The basic plan of the tetrapod limb includes three distinct can be viewed as serial identical structures arranged along the proximo-distal (PD) segments: the stylopod (arm), the zeugopod antero-posterior (AP) axis of the autopod, thumb to little finger, or (forearm) and the autopod (hand/foot). -
Chromosomal Evolution in Raphicerus Antelope Suggests Divergent X
www.nature.com/scientificreports OPEN Chromosomal evolution in Raphicerus antelope suggests divergent X chromosomes may drive speciation through females, rather than males, contrary to Haldane’s rule Terence J. Robinson1*, Halina Cernohorska2, Svatava Kubickova2, Miluse Vozdova2, Petra Musilova2 & Aurora Ruiz‑Herrera3,4 Chromosome structural change has long been considered important in the evolution of post‑zygotic reproductive isolation. The premise that karyotypic variation can serve as a possible barrier to gene fow is founded on the expectation that heterozygotes for structurally distinct chromosomal forms would be partially sterile (negatively heterotic) or show reduced recombination. We report the outcome of a detailed comparative molecular cytogenetic study of three antelope species, genus Raphicerus, that have undergone a rapid radiation. The species are largely conserved with respect to their euchromatic regions but the X chromosomes, in marked contrast, show distinct patterns of heterochromatic amplifcation and localization of repeats that have occurred independently in each lineage. We argue a novel hypothesis that postulates that the expansion of heterochromatic blocks in the homogametic sex can, with certain conditions, contribute to post‑ zygotic isolation. i.e., female hybrid incompatibility, the converse of Haldane’s rule. This is based on the expectation that hybrids incur a selective disadvantage due to impaired meiosis resulting from the meiotic checkpoint network’s surveillance of the asymmetric expansions of heterochromatic blocks in the homogametic sex. Asynapsis of these heterochromatic regions would result in meiotic silencing of unsynapsed chromatin and, if this persists, germline apoptosis and female infertility. Te chromosomal speciation theory 1,2 also referred to as the “Hybrid dysfunction model”3, has been one of the most intriguing questions in biology for decades. -
Homeobox Gene Expression Profile in Human Hematopoietic Multipotent
Leukemia (2003) 17, 1157–1163 & 2003 Nature Publishing Group All rights reserved 0887-6924/03 $25.00 www.nature.com/leu Homeobox gene expression profile in human hematopoietic multipotent stem cells and T-cell progenitors: implications for human T-cell development T Taghon1, K Thys1, M De Smedt1, F Weerkamp2, FJT Staal2, J Plum1 and G Leclercq1 1Department of Clinical Chemistry, Microbiology and Immunology, Ghent University Hospital, Ghent, Belgium; and 2Department of Immunology, Erasmus Medical Center, Rotterdam, The Netherlands Class I homeobox (HOX) genes comprise a large family of implicated in this transformation proces.14 The HOX-C locus transcription factors that have been implicated in normal and has been primarily implicated in lymphomas.15 malignant hematopoiesis. However, data on their expression or function during T-cell development is limited. Using degener- Hematopoietic cells are derived from stem cells that reside in ated RT-PCR and Affymetrix microarray analysis, we analyzed fetal liver (FL) in the embryo and in the adult bone marrow the expression pattern of this gene family in human multipotent (ABM), which have the unique ability to self-renew and thereby stem cells from fetal liver (FL) and adult bone marrow (ABM), provide a life-long supply of blood cells. T lymphocytes are a and in T-cell progenitors from child thymus. We show that FL specific type of hematopoietic cells that play a major role in the and ABM stem cells are similar in terms of HOX gene immune system. They develop through a well-defined order of expression, but significant differences were observed between differentiation steps in the thymus.16 Several transcription these two cell types and child thymocytes. -
Completed Thesis
THE UNIVERSITY OF WINCHESTER Faculty of Humanities and Social Sciences Human Uniqueness: Twenty-First Century Perspectives from Theology, Science and Archaeology Josephine Kiddle Bsc (Biology) MA (Religion) Thesis for the degree of Doctor of Philosophy February 2013 This Thesis has been completed as a requirement for a postgraduate research degree of the University of Winchester. The word count is: 89350 THE UNIVERSITY OF WINCHESTER ABSTRACT FOR THESIS Human Uniqueness: Twenty-First Century Perspectives from Theology, Science and Archaeology A project aiming to establish, through the three disciplines, the value of human uniqueness as an integrating factor for science with theology Josephine Kiddle Bsc (Biology) MA (Religion) Faculty of Humanities and Social Sciences Doctor of Philosophy February 2013 The theme that underlies the thesis is the challenge presented by science, as it developed from the time of the Enlightenment through the centuries until the present day, to Christian theology. The consequent conflict of ideas is traced in respect of biological science and the traditions of Protestant Christian doctrine, together with the advances of the developing discipline of prehistoric archaeology since the early nineteenth century. The common ground from which disagreement stemmed was the existence of human beings and the uniqueness of the human species as a group amongst all other creatures. With the conflict arising from this challenge, centring on the origin and history of human uniqueness, a rift became established between the disciplines which widened as they progressed through to the twentieth century. It is this separation that the thesis takes up and endeavours to analyse in the light of the influence of advancing science on the blending of philosophical scientific ideas with the elements of Christian faith of former centuries. -
Phylogenetic Systematics and the Evolutionary History of Some Intestinal Flatworm Parasites (Trematoda: Digenea: Plagiorchi01dea) of Anurans
PHYLOGENETIC SYSTEMATICS AND THE EVOLUTIONARY HISTORY OF SOME INTESTINAL FLATWORM PARASITES (TREMATODA: DIGENEA: PLAGIORCHI01DEA) OF ANURANS by RICHARD TERENCE 0'GRADY B.Sc, University Of British Columbia, 1978 M.Sc, McGill University, 1981 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department Of Zoology We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA March 1987 © Richard Terence O'Grady, 1987 In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the Head of my Department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. Department of Zoology The University of British Columbia 2075 Wesbrook Place Vancouver, Canada V6T 1W5 Date: March 24, 1987 i i Abstract Historical structuralism is presented as a research program in evolutionary biology. It uses patterns of common ancestry as initial hypotheses in explaining evolutionary history. Such patterns, represented by phylogenetic trees, or cladograms, are postulates of persistent ancestral traits. These traits are evidence of historical constraints on evolutionary change. Patterns and processes consistent with a cladogram are considered to be consistent with an initial hypothesis of historical constraint. As an application of historical structuralism, a phylogenetic analysis is presented for members of the digenean plagiorchioid genera Glypthelmins Stafford, 1905 and Haplometrana Lucker, 1931. -
Hox Gene Variation and Evolution
news and views annually degasses about 1 gigatonne (109 not nitrate exhaustion. on the microbial algae. The growth perfor- tonnes) of CO2 (ref. 3), equivalent to 20 per Yet the paradox persists. Virtually all phy- mance of the diatoms is all the more surpris- cent of current anthropogenic output. The toplankton species, including the picoplank- ing as nitrate reduction requires energy regression lines and intercepts of dissolved ton, are able to use nitrate; indeed, phyto- and the mediating enzyme contains iron. inorganic carbon, silicate and nitrate con- plankton other than diatoms routinely Indeed, why diatoms can be so much more centrations, measured in the upper 200 m of exhaust nitrate in the surface waters of the efficient than the other algae despite the the EUZ, indicate that silicate availability non-HNLC ocean. So why does this not hap- nitrate handicap needs to be explained. regulates both carbon and nitrate uptake pen in the EUZ and other low-silicate HNLC Balancing pelagic ecosystem budgets is and fate. The slope of the highly significant regions? Differences in grazing pressure still an art because we know so little about the 5 regression between nitrate and silicate is 1, have been proposed as an explanation . One abilities and predilections of the organisms8 which coincides with the known require- widely held view is that the small algae of the and their interactions with one another5. ment of these two elements by diatoms. The microbial loop are kept in check by heavy Whatever the outcome of studies on the lim- intercept represents the excess nitrate (about grazing pressure, whereas diatoms, because iting factors in the various HNLC regions 4 mmol m–3) that confers HNLC status on of their larger size (and possibly also the pro- and their subsystems, the status of diatoms as the EUZ. -
Molecular Evolution
SYSTEMATICS & EVOLUTION Molecular Evolution GINCY C GEORGE (Assistant Professor On Contract) Molecular Evolution Molecular Evolution • Molecular evolution is the area of evolutionary biology that studies evolutionary change at the level of the DNA sequence. Molecular Evolution • It includes the study of rates of sequence change, relative importance of adaptive and neutral changes, and changes in genome structure. Molecular evolution examines DNA and proteins, addressing two types of questions: How do DNA and proteins evolve? How are genes and organisms evolutionarily related? Study of how genes and proteins evolve and how are organisms related based on their DNA sequence • Molecular evolution therefore is the determination and comparative study of DNA and deduced amino acid sequences. • Sequences from different organisms or populations are matched or aligned • Evolution at molecular level is observable at the base (nucleotide) level changes in the DNA and amino acid changes in proteins • Both can be studied by examining the differences between species • Both polymorphism and evolutionary changes between species can be explained by two processes ie; • Natural selection and Neutral drift • The main factors that influence Natural selection and Neutral drift are population size and the selection coefficient of the different genotypes • If the population is small and the selection coefficient low; genetic drift dominates, • Whereas natural selection dominates if the population and selection coefficients are large • Evolution of Modern species -
Concerted Evolution at the Population Level: Pupfish Hindill Satellite DNA Sequences JOHN F
Proc. Nati. Acad. Sci. USA Vol. 91, pp. 994-998, February 1994 Evolution Concerted evolution at the population level: Pupfish HindIll satellite DNA sequences JOHN F. ELDER, JR.* AND BRUCE J. TURNER Department of Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 Communicated by Bruce Wallace, October 18, 1993 ABSTRACT The canonical monomers (170 bp) of an organisms. There are very little data on their variation within abundant (1.9 x 10' copies per diploid genome) satellite DNA or divergence among conspecific natural populations. sequence family In the genome of Cyprinodon wriegau, a We report here sequence comparisons ofthe predominant "pph" that ranges along the Atlantic coast fom Cape Cod or "canonical" monomers of a satellite DNA array in sam- to central Mexico, are divergent in base sequence in 10 of 12 ples of 12 natural populations of Cyprinodon variegatus smle collected from natural populations. The divergence (Cyprinodontidae), a coastal killifish species. Ten of these Involves sbsitions, deletis, and insertions, is marked in samples have distinctive and characteristic canonical mono- scoe (mean pairwise sequence slarit = 61.6%; range = mers with high levels of intraindividual and intrapopulation 35-95.9%), Is largely ed to the 3' half of the monomer, homogeneity.t In other words, this satellite DNA has appar- and Is not correlated with the disace among cllg sites. ently undergone concerted evolution at or near the level of Repetitive loning and direct genomic sequencing expriments the local population. failed to detect intrapopulation and intraindividual variation, A preliminary account of some of our early findings has hig levels of sequence homogeneity within popu- appeared in a symposium volume (6). -
The Role of Causal Processes in the Neutral and Nearly Neutral Theories
Dartmouth College Dartmouth Digital Commons Dartmouth Scholarship Faculty Work 12-2008 The Role of Causal Processes in the Neutral and Nearly Neutral Theories Michael R. Dietrich Dartmouth College Roberta L. Millstein University of California, Davis Follow this and additional works at: https://digitalcommons.dartmouth.edu/facoa Part of the Biology Commons, Evolution Commons, and the Philosophy of Science Commons Dartmouth Digital Commons Citation Dietrich, Michael R. and Millstein, Roberta L., "The Role of Causal Processes in the Neutral and Nearly Neutral Theories" (2008). Dartmouth Scholarship. 1906. https://digitalcommons.dartmouth.edu/facoa/1906 This Article is brought to you for free and open access by the Faculty Work at Dartmouth Digital Commons. It has been accepted for inclusion in Dartmouth Scholarship by an authorized administrator of Dartmouth Digital Commons. For more information, please contact [email protected]. The Role of Causal Processes in the Neutral and Nearly Neutral Theories Michael R. Dietrich and Roberta L. Millstein† The neutral and nearly neutral theories of molecular evolution are sometimes char- acterized as theories about drift alone, where drift is described solely as an outcome, rather than a process. We argue, however, that both selection and drift, as causal processes, are integral parts of both theories. However, the nearly neutral theory ex- plicitly recognizes alleles and/or molecular substitutions that, while engaging in weakly selected causal processes, exhibit outcomes thought to be characteristic of random drift. A narrow focus on outcomes obscures the significant role of weakly selected causal processes in the nearly neutral theory. 1. Introduction. Gabriel Dover once complained that being nearly neutral is like being “just a little bit pregnant” (Dover 1997, 91). -
Molecular Facts and Evolutionary Theory
Journal and Proceedings of The Royal Society of New South Wales Volume 120 Parts 1 and 2 [Issued September, 1987] pp.39-48 Return to CONTENTS Molecular Facts and Evolutionary Theory George L. Gabor Miklos Evolutionary biology has had a fascinating recent history. It was realized more than a century ago that the way of approaching many evolutionary problems lay in studies of morphology. However, as pointed out by Bateson in 1922, “discussions of evolution came to an end primarily because no progress was being made. Morphology having been explored in the minutest corners, we turned elsewhere. We became geneticists in the conviction that there at least must evolutionary wisdom be found.” At the same time, while it was clear that morphology must have its bases in embryology, it was instead the mathematically oriented theory of neo-Darwinism that rose to prominence over the next half century. This theory is essentially an amalgam of Mendelian genetics and classical Darwinian selection, firmly based on changes in gene frequencies at particular loci. In the late 1960s, it began to be evaluated at a crude molecular level using gel electrophoresis techniques that allowed the examination of polymorphisms at many enzyme coding loci. In the mid 1970s the technological advances of genetic engineering ushered in an entirely new era of molecular biology. The molecular biologist became the successor to the pure geneticist, and the focus switched back to the molecular analysis of development. The molecular biology of recombinant DNA revolutionized the previous concepts of genome organization and function and led to a reappraisal of the importance of neo-Darwinism. -
Evolutionary Developmental Biology 573
EVOC20 29/08/2003 11:15 AM Page 572 Evolutionary 20 Developmental Biology volutionary developmental biology, now often known Eas “evo-devo,” is the study of the relation between evolution and development. The relation between evolution and development has been the subject of research for many years, and the chapter begins by looking at some classic ideas. However, the subject has been transformed in recent years as the genes that control development have begun to be identified. This chapter looks at how changes in these developmental genes, such as changes in their spatial or temporal expression in the embryo, are associated with changes in adult morphology. The origin of a set of genes controlling development may have opened up new and more flexible ways in which evolution could occur: life may have become more “evolvable.” EVOC20 29/08/2003 11:15 AM Page 573 CHAPTER 20 / Evolutionary Developmental Biology 573 20.1 Changes in development, and the genes controlling development, underlie morphological evolution Morphological structures, such as heads, legs, and tails, are produced in each individual organism by development. The organism begins life as a single cell. The organism grows by cell division, and the various cell types (bone cells, skin cells, and so on) are produced by differentiation within dividing cell lines. When one species evolves into Morphological evolution is driven another, with a changed morphological form, the developmental process must have by developmental evolution changed too. If the descendant species has longer legs, it is because the developmental process that produces legs has been accelerated, or extended over time. -
Drosophila Pax6 Promotes Development of the Entire Eye-Antennal Disc, Thereby Ensuring Proper Adult Head Formation
PAPER Drosophila Pax6 promotes development of the entire COLLOQUIUM eye-antennal disc, thereby ensuring proper adult head formation Jinjin Zhua, Sneha Palliyila, Chen Ranb, and Justin P. Kumara,1 aDepartment of Biology, Indiana University, Bloomington, IN 47405; and bDepartment of Biology, Stanford University, Stanford, CA 94305 Edited by Ellen V. Rothenberg, California Institute of Technology, Pasadena, CA, and accepted by Editorial Board Member Neil H. Shubin February 17, 2017 (received for review July 26, 2016) Paired box 6 (Pax6) is considered to be the master control gene for molecular battle among GRNs allows for the subdivision of the eye development in all seeing animals studied so far. In vertebrates, eye-antennal disc to be maintained within a single continuous it is required not only for lens/retina formation but also for the cellular field (13–16). Of the GRNs that are known to operate development of the CNS, olfactory system, and pancreas. Although within the eye-antennal disc, the retinal determination (RD) Pax6 plays important roles in cell differentiation, proliferation, and network, which controls eye development, is the best studied (17). patterning during the development of these systems, the underlying At the core of the RD network lie the Paired box 6 (Pax6) genes mechanism remains poorly understood. In the fruit fly, Drosophila eyeless (ey)andtwin of eyeless (toy), the SIX family member sine melanogaster, Pax6 also functions in a range of tissues, including oculis (so), the transcriptional coactivator eyes absent (eya), and the the eye and brain. In this report, we describe the function of Pax6 in Ski/Sno family member dachshund (dac)(17).