Biological Papers of the University of Alaska
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Fresh- and Brackish-Water Cold-Tolerant Species of Southern Europe: Migrants from the Paratethys That Colonized the Arctic
water Review Fresh- and Brackish-Water Cold-Tolerant Species of Southern Europe: Migrants from the Paratethys That Colonized the Arctic Valentina S. Artamonova 1, Ivan N. Bolotov 2,3,4, Maxim V. Vinarski 4 and Alexander A. Makhrov 1,4,* 1 A. N. Severtzov Institute of Ecology and Evolution, Russian Academy of Sciences, 119071 Moscow, Russia; [email protected] 2 Laboratory of Molecular Ecology and Phylogenetics, Northern Arctic Federal University, 163002 Arkhangelsk, Russia; [email protected] 3 Federal Center for Integrated Arctic Research, Russian Academy of Sciences, 163000 Arkhangelsk, Russia 4 Laboratory of Macroecology & Biogeography of Invertebrates, Saint Petersburg State University, 199034 Saint Petersburg, Russia; [email protected] * Correspondence: [email protected] Abstract: Analysis of zoogeographic, paleogeographic, and molecular data has shown that the ancestors of many fresh- and brackish-water cold-tolerant hydrobionts of the Mediterranean region and the Danube River basin likely originated in East Asia or Central Asia. The fish genera Gasterosteus, Hucho, Oxynoemacheilus, Salmo, and Schizothorax are examples of these groups among vertebrates, and the genera Magnibursatus (Trematoda), Margaritifera, Potomida, Microcondylaea, Leguminaia, Unio (Mollusca), and Phagocata (Planaria), among invertebrates. There is reason to believe that their ancestors spread to Europe through the Paratethys (or the proto-Paratethys basin that preceded it), where intense speciation took place and new genera of aquatic organisms arose. Some of the forms that originated in the Paratethys colonized the Mediterranean, and overwhelming data indicate that Citation: Artamonova, V.S.; Bolotov, representatives of the genera Salmo, Caspiomyzon, and Ecrobia migrated during the Miocene from I.N.; Vinarski, M.V.; Makhrov, A.A. -
Isolation and Characterization of Brachymystax Lenok Microsatellite Loci and Cross-Species Amplification in Hucho Spp
Molecular Ecology Notes (2004) 4, 150–152 doi: 10.1111/j.1471-8286.2004.00594.x PRIMERBlackwell Publishing, Ltd. NOTE Isolation and characterization of Brachymystax lenok microsatellite loci and cross-species amplification in Hucho spp. and Parahucho perryi E. FROUFE,*† K. M. SEFC,‡ P. ALEXANDRINO*† and S. WEISS‡ *CIBIO/UP, Campus Agrário de Vairão, 4480–661, Vairão, Portugal, †Faculdade de Ciências, Universidade do Porto, Praça Gomes Teixeira, 4009–002 Porto, Portugal, ‡Karl-Franzens University Graz, Institute of Zoology, Universitätsplatz 2, A-8010 Graz, Austria Abstract We isolated and characterized eight polymorphic microsatellite markers for Brachymystax lenok (Pallas, 1773) from genomic libraries enriched for (GATA)n, (GACA)n and (ATG)n microsatellites. The number of alleles per locus ranged from two to 17. Heterozygosity ranged from 0.2 to 0.95. In addition, cross-species amplification was successful for seven loci in Hucho hucho, eight in H. taimen and seven in Parahucho perryi. Keywords: Brachymystax lenok, Hucho hucho, Hucho taimen, microsatellite, Parahucho perryi, Salmonids Received 29 October 2003; revision accepted 12 December 2003 Brachymystax lenok is a freshwater resident salmonid present and fragments in a size range of 500–1000 bp were isolated throughout eastern Siberia and portions of northern from a 2% agarose gel using the Nucleospin kit (BD Mongolia, China and Korea. Despite its wide distribution, Biosciences, Clonetech). Oligonucleotide adaptors (RBgl24, populations of this species are currently declining through 5′-AGCACTCTCCAGCCTCTCACCGCA-3′, and RBgl12, overexploitation, environmental pollution and other causes, 5′-GATCTGCGGTGA-3′) were ligated to the genomic DNA and information about them is still very scarce. Currently, fragments using T4 DNA ligase (Promega) overnight at two forms of lenok are distinguished — blunt and sharp- 4 °C. -
The Ecology and Management of the European Grayling Thymallus Thymallus (Linnaeus)
The ecology and management of the European grayling Thymallus thymallus (Linnaeus). Interim report Item Type monograph Authors Ingram, A.; Ibbotson, A.; Gallagher, M. Publisher Institute of Freshwater Ecology Download date 03/10/2021 22:03:11 Link to Item http://hdl.handle.net/1834/24874 The Ecology and Management of the European Grayling Thymallus thymallus (Linnaeus) Interim Report Ingram A Ibbotson A Gallagher M The Ecology and Management of the European Grayling Thymallus thymallus (Linnaeus) Interim Report Ingram A Ibbotson A Gallagher M INTELLECTUAL PROPERTY RIGHTS CONFIDENTIALITY STATEMENT 'In accordance with our normal practice, this report is for the use only of the party to whom it is addressed, and no responsibility is accepted to any third party for the whole or any part of its contents. Neither the whole nor any part of this report or any reference thereto may be included in any published document, circular or statement, nor published or referred to in any way without our written approval of the form and context in which it may appear.' 11 CHAPTER 1 1 Overall aim A collaborative research and development project between the Institute of Freshwater Ecology and the Environment Agency in the UK, to review the ecology, status and management of grayling in order to provide recommendations for future management of grayling fisheries in England and Wales. 2 Objectives • To review grayling ecology, status and management practice in concentrating on England and Wales but including published literature from Europe and North America, where appropriate. • To recommend best management practices on the basis of objective 1 and produce a guidance leaflet for internal and external circulation which promotes the key issues. -
Bristol Bay, Alaska
EPA 910-R-14-001C | January 2014 An Assessment of Potential Mining Impacts on Salmon Ecosystems of Bristol Bay, Alaska Volume 3 – Appendices E-J Region 10, Seattle, WA www.epa.gov/bristolbay EPA 910-R-14-001C January 2014 AN ASSESSMENT OF POTENTIAL MINING IMPACTS ON SALMON ECOSYSTEMS OF BRISTOL BAY, ALASKA VOLUME 3—APPENDICES E-J U.S. Environmental Protection Agency Region 10 Seattle, WA CONTENTS VOLUME 1 An Assessment of Potential Mining Impacts on Salmon Ecosystems of Bristol Bay, Alaska VOLUME 2 APPENDIX A: Fishery Resources of the Bristol Bay Region APPENDIX B: Non-Salmon Freshwater Fishes of the Nushagak and Kvichak River Drainages APPENDIX C: Wildlife Resources of the Nushagak and Kvichak River Watersheds, Alaska APPENDIX D: Traditional Ecological Knowledge and Characterization of the Indigenous Cultures of the Nushagak and Kvichak Watersheds, Alaska VOLUME 3 APPENDIX E: Bristol Bay Wild Salmon Ecosystem: Baseline Levels of Economic Activity and Values APPENDIX F: Biological Characterization: Bristol Bay Marine Estuarine Processes, Fish, and Marine Mammal Assemblages APPENDIX G: Foreseeable Environmental Impact of Potential Road and Pipeline Development on Water Quality and Freshwater Fishery Resources of Bristol Bay, Alaska APPENDIX H: Geologic and Environmental Characteristics of Porphyry Copper Deposits with Emphasis on Potential Future Development in the Bristol Bay Watershed, Alaska APPENDIX I: Conventional Water Quality Mitigation Practices for Mine Design, Construction, Operation, and Closure APPENDIX J: Compensatory Mitigation and Large-Scale Hardrock Mining in the Bristol Bay Watershed AN ASSESSMENT OF POTENTIAL MINING IMPACTS ON SALMON ECOSYSTEMS OF BRISTOL BAY, ALASKA VOLUME 3—APPENDICES E-J Appendix E: Bristol Bay Wild Salmon Ecosystem: Baseline Levels of Economic Activity and Values Bristol Bay Wild Salmon Ecosystem Baseline Levels of Economic Activity and Values John Duffield Chris Neher David Patterson Bioeconomics, Inc. -
Chromosomal Study of the Lenoks, Brachymystax(Salmoniformes
Journal of Species Research 2(1):91-98, 2013 Chromosomal study of the lenoks, Brachymystax (Salmoniformes, Salmonidae) from the South of the Russian Far East I.V. Kartavtseva*, L.K. Ginatulina, G.A. Nemkova and S.V. Shedko Institute of Biology and Soil Science of the Far East Branch of the Russian Academy of Sciences, Prospect 100 let Vladivostoku 159, Vladivostok 690022 *Correspondent: [email protected], [email protected] An investigation of the karyotypes of two species of the genus Brachymystax (B. lenok and B. tumensis) has been done for the Russia Primorye rivers running to the East Sea basin, and others belonging to Amur basin. Based on the analysis of two species chromosome characteristics, combined with original and literary data, four cytotypes have been described. One of these cytotypes (Cytotype I: 2n=90, NF=110-118) was the most common. This common cytotype belongs to B. tumensis from the rivers of the East Sea basin and B. lenok from the rivers of the Amur basin, i.e. extends to the zones of allopatry. In the rivers of the Amur river basin, in the zone of the sympatric habitat of two species, each taxon has karyotypes with different chromosome numbers, B. tumensis (2n=92) and B. lenok (2n=90). Because of the ability to determine a number of the chromosome arms for these two species, additional cytotype have been identified for B. tum- ensis: Cytotype II with 2n=92, NF=110-124 in the rivers basins of the Yellow sea and Amur river and for B. lenok three cytotypes: Cytotype I: 2n=90, NF=110 in the Amur river basin; Cytotype III with 2n=90, NF=106-126 in the Amur river basin and Cytotypes IV with 2n=92, NF=102 in the Baikal lake. -
Assessing Adaptive Genetic Variation for Conservation and Management of the European Grayling (Thymallus Thymallus)
Assessing adaptive genetic variation for conservation and management of the European grayling (Thymallus thymallus) J. V. Huml PhD 2017 Assessing adaptive genetic variation for conservation and management of the European grayling (Thymallus thymallus) Jana Vanessa Huml A thesis submitted in partial fulfilment of the requirements of the Manchester Metropolitan University for the degree of Doctor of Philosophy 2017 Faculty of Science and Engineering Manchester Metropolitan University Abstract In this PhD, functional genetic variation of European grayling (Thymallus thymallus) is assessed to inform conservation and management of the species. This study is the first to characterize immune variation at the Major Histocompatibility complex (MHC) in grayling. The MHC is a marker of high ecological relevance, because of the strong association between immunity and fitness. Taking advantage of advances in sequencing technology, an analytical pipeline optimized for high-throughput, efficient and accurate genotyping of multi-gene families in non-model species is presented. Immune genetic variation is compared to neutral marker data. Results confirm the hypothesis that neutral marker variation does not predict immune genetic variation. Further, the possible effect of supplementing wild populations with hatchery-reared fish on immune genetic variation is evaluated. Significantly lower estimates of heterozygosity were found in stocked than purely native populations. Lower differentiation at immune genes than at neutral markers are indicative of the effects of balancing selection acting upon the MHC, within purely native, but not stocked populations. Furthermore species distribution modelling is used to identify environmental parameters shaping the distribution of grayling. To evaluate risks imposed by climate change, the sensitivity of grayling to climatic variables and range changes under predicted future scenarios are assessed. -
Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Phoxinus Phoxinus
Morphological and trophic divergence of lake and stream minnows (Phoxinus phoxinus) Kristin Scharnweber1 1Uppsala Universitet April 27, 2020 Abstract Phenotypic divergence in response to divergent natural selection between environments is a common phenomenon in species of freshwater fishes. Intraspecific differentiation is often pronounced between individual inhabiting lakes versus stream habitats. The different hydrodynamic regimes in the contrasting habitats may promote a variation of body shape, but this could be intertwined with morphological adaptions to a specific foraging mode. Herein, I studied the divergence pattern of the European minnow (Phoxinus phoxinus), a common freshwater fish that has paid little attention despite its large distribution. In many Scandinavian mountain lakes, they are considered as being invasive and were found to pose threats to the native fish populations due to dietary overlap. Minnows were recently found to show phenotypic adaptions in lake versus stream habitats, but the question remained if this divergence pattern is related to trophic niche partitioning. I therefore studied the patterns of minnow divergence in morphology (i.e. using geometric morphometrics) and trophic niches (i.e. using stomach content analyses) in the lake Annsj¨onand˚ its tributaries to link the changes in body morphology to the feeding on specific resources. Lake minnows showed a strong reliance on zooplankton and a more streamlined body shape with an upward facing snout, whereas stream minnows fed on macroinvertebrates (larvae and adults) to a higher degree and had a deeper body with a snout that was pointed down. Correlations showed a significant positive relationship of the proportion of zooplankton in the gut and morphological features present in the lake minnows. -
The Grayling Society the Journal Of
© The Journal of The Grayling Society Volume 27 - Number 1 • Winter 2015 © C O N T E N T S The Official Journal of Editorial Bob Male 2 The Grayling Society 39th Symposium and AGM; Chairman’s Report Steve Skuce 4 ISSN 1476-0061 39th Symposium and AGM 6 Free to all our Members in - Poet’s Corner 14 Australia Lithuania Austria Luxembourg Grayling Fly Fisher’s Paradise Dave Martin 16 Belgium Netherlands Canada New Zealand Drag? - An Annan Revelation Alan Ayre 20 China Norway Denmark Poland The Novice Angler - Part 2 The Novice 21 Eire Portugal England Scotland Area News and Fishing Days 24 Finland Slovenia France Sweden My First Area Day Paul Deaville 26 Germany Switzerland Italy U. S. A. Not a Grayling Sunday 27 Isle of Man Wales Update on the Fate of Grayling Editor - Bob Male in North-East and East Yorkshire Dave Southall 30 Telephone: 01722 503939 e-mail: [email protected] Big Grayling 2 Robin Mulholland 34 Advertising - Rod Calbrade Arctic Grayling Haven Dave Radcliffe 35 Subscriptions per annum: Full £28.00, Joint £47.00 What do Fish from the River Alyn Eat? Led Jervis 38 Senior (over 70) £22.00 Junior (under 16) £5.00 The Perfect Line? J.S. Davison 44 Details available from the Membership Secretary Unica Grayling Dave Southall 46 Mike Tebbs Telephone: 01985 841192 Cannibalism in Grayling Stanisław Cios 50 e-mail: [email protected] Book Review Bob Male 53 Design and Production Peter Silk Design e-mail: [email protected] Officers of The Society 54 Society Web Site Minutes of the 39th AGM 56 www.graylingsociety.net © The Grayling Society, 2015 Society Accounts 2015 58 Printed by The copyright of all material in this edition of ‘Grayling’ remains with the Authors, or the Grayling Society, and may not be reproduced, by any means whatsoever, without the copyright holders written permission. -
Spawning and Early Life History of Mountain Whitefish in The
SPAWNING AND EARLY LIFE HISTORY OF MOUNTAIN WHITEFISH IN THE MADISON RIVER, MONTANA by Jan Katherine Boyer A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Fish and Wildlife Management MONTANA STATE UNIVERSITY Bozeman, Montana January 2016 © COPYRIGHT by Jan Katherine Boyer 2016 All Rights Reserved ii ACKNOWLEDGMENTS First, I thank my advisor, Dr. Christopher Guy, for challenging me and providing advice throughout every stage of this project. I also thank my committee members, Dr. Molly Webb and Dr. Tom McMahon, for guidance and suggestions which greatly improved this research. My field technicians Jordan Rowe, Greg Hill, and Patrick Luckenbill worked hard through fair weather and snowstorms to help me collect the data presented here. I also thank Travis Horton, Pat Clancey, Travis Lohrenz, Tim Weiss, Kevin Hughes, Rick Smaniatto, and Nick Pederson of Montana Fish, Wildlife and Parks for field assistance and advice. Mariah Talbott, Leif Halvorson, and Eli Cureton of the U. S. Fish and Wildlife Service assisted with field and lab work. Richard Lessner and Dave Brickner at the Madison River Foundation helped to secure funding for this project and conduct outreach in the Madison Valley. The Channels Ranch, Valley Garden Ranch, Sun West Ranch, and Galloup’s Slide Inn provided crucial land and river access. I also thank my fellow graduate students both for advice on project and class work and for being excellent people to spend time with. Ann Marie Reinhold, Mariah Mayfield, David Ritter, and Peter Brown were especially helpful during the early stages of this project. -
CPUE Estimates and Catch-Age Analysis of Burbot in the Tanana River Drainage, 1994
Fishery Data Series No. 95-37 CPUE Estimates and Catch-age Analysis of Burbot in the Tanana River Drainage, 1994 by Matthew J. Evenson and Margaret F. Merritt November 1995 Alaska Department of Fish and Game Division of Sport Fish FISHERY DATA SERIES NO. 95-37 CPUE ESTIMATES AND CATCH-AGE ANALYSIS OF BURBOT IN THE TANANA RIVER DRAINAGE, 1994 by Matthew J. Evenson and Margaret F. Merritt Division of Sport Fish, Fairbanks Alaska Department of Fish and Game Division of Sport Fish, Research and Technical Services 333 Raspberry Road, Anchorage, Alaska, 99518-1599 November 1995 Development and publication of this manuscript were partially financed by the Federal Aid in Sport Fish Restoration Act (16 U.S.C. 777-777K) under Project F-10-10, Job No. R-3-4(b). The Fishery Data Series was established in 1987 for the publication of technically oriented results for a single project or a group of closely related projects. Fishery Data Series reports are intended for fishery and other technical professionals. Distribution is to state and local publication distribution centers, libraries and individuals and, on request, to other libraries, agencies, and individuals. This publication has undergone editorial and peer review. Matthew J. Evenson and Margaret F. Merritt Alaska Department of Fish and Game, Division of Sport Fish, Region III, 1300 College Road, Fairbanks, AK 99701-1599, USA This document should be cited as: Evenson, M. J. and M. F. Merritt. 1995. CPUE estimates and catch-age analysis of burbot in the Tanana River drainage, 1994. Alaska Department of Fish and Game, Fishery Data Series No. -
Revalidation and Redescription of Brachymystax Tsinlingensis Li, 1966 (Salmoniformes: Salmonidae) from China
Zootaxa 3962 (1): 191–205 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3962.1.12 http://zoobank.org/urn:lsid:zoobank.org:pub:F7864FFE-F182-455E-B37A-8A253D8DB72D Revalidation and redescription of Brachymystax tsinlingensis Li, 1966 (Salmoniformes: Salmonidae) from China YING-CHUN XING1,2, BIN-BIN LV3, EN-QI YE2, EN-YUAN FAN1, SHI-YANG LI4, LI-XIN WANG4, CHUN- GUANG ZHANG2,* & YA-HUI ZHAO2,* 1Natural Resource and Environment Research Center, Chinese Academy of Fishery Sciences, Beijing, China. 2Institute of Zoology, Chinese Academy of Sciences, Beijing, China. 3Yellow River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Xi’an, China. 4The College of Forestry of Beijing Forestry University, Beijing, China. *Corresponding authors: Yahui Zhao, [email protected]; Chunguang Zhang, [email protected] Abstract Brachymystax tsinlingensis Li, 1966 is revalidated and redescribed. It can be distinguished from all congeners by the fol- lowing combination of characteristics: no spots on operculum; gill rakers 15-20; lateral-line scales 98-116; pyloric caeca 60-71. Unique morphological characters and genetic divergence of this species are discussed. This species has a limited distribution in several streams of the middle part of the Qinling Mountains in China. Methods for management and pro- tection of B. tsinlingensis need to be re-evaluated. Key words: Brachymystax, revalidation, redescription, Salmonidae, China Introduction The genus Brachymystax Günther, 1866, belonging to Salmonidae, Salmoniformes, is distributed in eastern and northern Asia with three currently recognized valid species (Froese & Pauly, 2014): B.