Synaptic Plasticity and Translation Initiation Eric Klann,1,2,3 Marcia D
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Author’s Accepted Manuscript Synapse-specific stabilization of plasticity processes: The synaptic tagging and capture hypothesis revisited ten years later Angel Barco, Mikel Lopez de Armentia, Juan M. Alarcon PII: S0149-7634(08)00008-0 DOI: doi:10.1016/j.neubiorev.2008.01.002 Reference: NBR 1021 www.elsevier.com/locate/neubiorev To appear in: Neuroscience and Biobehavioral Reviews Received date: 30 October 2007 Revised date: 28 December 2007 Accepted date: 7 January 2008 Cite this article as: Angel Barco, Mikel Lopez de Armentia and Juan M. Alarcon, Synapse-specific stabilization of plasticity processes: The synaptic tagging and capture hypothesis revisited ten years later, Neuroscience and Biobehavioral Reviews (2008), doi:10.1016/j.neubiorev.2008.01.002 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting galley proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. The STC hypothesis revisited Synapse-specific stabilization of plasticity processes: The synaptic tagging and capture hypothesis revisited ten years later Angel Barco1*, Mikel Lopez de Armentia1 and Juan M. Alarcon2 1Instituto de Neurociencias de Alicante. (Universidad Miguel Hernández-Consejo Superior de Investigaciones Científicas). Campus de Sant Joan. Apt. 18. Sant Joan d’Alacant. 03550. Alicante, Spain. 2SUNY Downstate Medical Center. 450 Clarkson Ave., Box 25, Brooklyn, NY 11203. -
Systematic Identification of Genes Regulating Synaptic Remodeling In
Genes Genet. Syst. (2020) 95, p. 101–110 Genes required for synaptic remodeling 101 Systematic identification of genes regulating synaptic remodeling in the Drosophila visual system Tomohiro Araki, Jiro Osaka, Yuya Kato, Mai Shimozono, Hinata Kawamura, Riku Iwanaga, Satoko Hakeda-Suzuki and Takashi Suzuki* Graduate School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa 226-8501, Japan (Received 17 December 2019, accepted 21 January 2020; J-STAGE Advance published date: 4 June 2020) In many animals, neural activity contributes to the adaptive refinement of synaptic properties, such as firing frequency and the number of synapses, for learning, memorizing and adapting for survival. However, the molecular mech- anisms underlying such activity-dependent synaptic remodeling remain largely unknown. In the synapses of Drosophila melanogaster, the presynaptic active zone (AZ) forms a T-shaped presynaptic density comprising AZ proteins, including Bruchpilot (Brp). In a previous study, we found that the signal from a fusion pro- tein molecular marker consisting of Brp and mCherry becomes diffuse under con- tinuous light over three days (LL), reflecting disassembly of the AZ, while remaining punctate under continuous darkness. To identify the molecular players control- ling this synaptic remodeling, we used the fusion protein molecular marker and performed RNAi screening against 208 neuron-related transmembrane genes that are highly expressed in the Drosophila visual system. Second analyses using the STaR (synaptic tagging with recombination) technique, which showed a decrease in synapse number under the LL condition, and subsequent mutant and overexpres- sion analysis confirmed that five genes are involved in the activity-dependent AZ disassembly. -
Functionally Diverse Dendritic Mrnas Rapidly Associate with Ribosomes Following a Novel Experience
ARTICLE Received 19 Feb 2014 | Accepted 24 Jun 2014 | Published 29 Jul 2014 DOI: 10.1038/ncomms5510 Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience Joshua A. Ainsley1, Laurel Drane1, Jonathan Jacobs1, Kara A. Kittelberger1,w & Leon G. Reijmers1 The subcellular localization and translation of messenger RNA (mRNA) supports functional differentiation between cellular compartments. In neuronal dendrites, local translation of mRNA provides a rapid and specific mechanism for synaptic plasticity and memory forma- tion, and might be involved in the pathophysiology of certain brain disorders. Despite the importance of dendritic mRNA translation, little is known about which mRNAs can be translated in dendrites in vivo and when their translation occurs. Here we collect ribosome- bound mRNA from the dendrites of CA1 pyramidal neurons in the adult mouse hippocampus. We find that dendritic mRNA rapidly associates with ribosomes following a novel experience consisting of a contextual fear conditioning trial. High throughput RNA sequencing followed by machine learning classification reveals an unexpected breadth of ribosome-bound den- dritic mRNAs, including mRNAs expected to be entirely somatic. Our findings are in agree- ment with a mechanism of synaptic plasticity that engages the acute local translation of functionally diverse dendritic mRNAs. 1 Department of Neuroscience, Tufts University, Boston, Massachusetts 02111, USA. w Present address: Center for Translational Social Neuroscience, Yerkes National Primate Research Center, Emory University, Atlanta, Georgia 30322, USA. Correspondence and requests for materials should be addressed to L.R. (email: [email protected]). NATURE COMMUNICATIONS | 5:4510 | DOI: 10.1038/ncomms5510 | www.nature.com/naturecommunications 1 & 2014 Macmillan Publishers Limited. -
Region-Specific Transcriptional Changes Following the Three
Molecular Psychiatry (2007) 12, 167–189 & 2007 Nature Publishing Group All rights reserved 1359-4184/07 $30.00 www.nature.com/mp ORIGINAL ARTICLE Region-specific transcriptional changes following the three antidepressant treatments electro convulsive therapy, sleep deprivation and fluoxetine B Conti1, R Maier2, AM Barr1,3, MC Morale1,4,XLu1, PP Sanna1, G Bilbe2, D Hoyer2 and T Bartfai1 1Molecular and Integrative Neuroscience Department, The Harold L Dorris Neurological Research Institute, The Scripps Research Institute, La Jolla, CA, USA and 2Neuroscience Research, Novartis Institutes for Biomedical Research, Basel, Switzerland The significant proportion of depressed patients that are resistant to monoaminergic drug therapy and the slow onset of therapeutic effects of the selective serotonin reuptake inhibitors (SSRIs)/serotonin/noradrenaline reuptake inhibitors (SNRIs) are two major reasons for the sustained search for new antidepressants. In an attempt to identify common underlying mechanisms for fast- and slow-acting antidepressant modalities, we have examined the transcriptional changes in seven different brain regions of the rat brain induced by three clinically effective antidepressant treatments: electro convulsive therapy (ECT), sleep deprivation (SD), and fluoxetine (FLX), the most commonly used slow-onset antidepressant. Each of these antidepressant treatments was applied with the same regimen known to have clinical efficacy: 2 days of ECT (four sessions per day), 24 h of SD, and 14 days of daily treatment of FLX, respectively. Transcriptional changes were evaluated on RNA extracted from seven different brain regions using the Affymetrix rat genome microarray 230 2.0. The gene chip data were validated using in situ hybridization or autoradiography for selected genes. -
Expression and Subcellular Distribution of Novel Glomerulus-Associated Proteins Dendrin, Ehd3, Sh2d4a, Plekhh2, and 2310066E14rik
Basic Science Articles Expression and Subcellular Distribution of Novel Glomerulus-Associated Proteins Dendrin, Ehd3, Sh2d4a, Plekhh2, and 2310066E14Rik Jaakko Patrakka,*† Zhijie Xiao,* Masatoshi Nukui,* Minoru Takemoto,* Liqun He,* Asmundur Oddsson,* Ljubica Perisic,* Anne Kaukinen,‡ Cristina Al-Khalili Szigyarto,§ ʈ Mathias Uhle´n,§ Hannu Jalanko,‡ Christer Betsholtz,* and Karl Tryggvason* ʈ *Division of Matrix Biology, Department of Medical Biochemistry and Biophysics, and Department of Medicine, Karolinska Institute, and §Department of Biotechnology, Royal Institute of Technology, Stockholm, Sweden; and †Electron Microscopy Unit, Institute of Biotechnology, and ‡Hospital for Children and Adolescents and Biomedicum Helsinki, University of Helsinki, Helsinki, Finland The glomerular capillary tuft is a highly specialized microcapillary that is dedicated to function as a sophisticated molecular sieve. The glomerulus filter has a unique molecular composition, and several essential glomerular proteins are expressed in the kidney exclusively by glomerular podocytes. A catalog of >300 glomerulus-upregulated transcripts that were identified using expressed sequence tag profiling and microarray analysis was published recently. This study characterized the expression profile of five glomerulus-upregulated transcripts/proteins (ehd3, dendrin, sh2d4a, plekhh2, and 2310066E14Rik) in detail. The expression pattern of these novel glomerular transcripts in various mouse tissues was studied using reverse transcriptase–PCR, Northern blotting, and in -
Stargazin and Other Transmembrane AMPA Receptor Regulating Proteins Interact with Synaptic Scaffolding Protein MAGI-2 in Brain
The Journal of Neuroscience, July 26, 2006 • 26(30):7875–7884 • 7875 Cellular/Molecular Stargazin and Other Transmembrane AMPA Receptor Regulating Proteins Interact with Synaptic Scaffolding Protein MAGI-2 in Brain Fang Deng, Maureen G. Price, Caleb F. Davis, Mayra Mori, and Daniel L. Burgess Department of Neurology, Baylor College of Medicine, Houston, Texas 77030 The spatial coordination of neurotransmitter receptors with other postsynaptic signaling and structural molecules is regulated by a diverse array of cell-specific scaffolding proteins. The synaptic trafficking of AMPA receptors by the stargazin protein in some neurons, for example, depends on specific interactions between the C terminus of stargazin and the PDZ [postsynaptic density-95 (PSD-95)/Discs large/zona occludens-1] domains of membrane-associated guanylate kinase scaffolding proteins PSD-93 or PSD-95. Stargazin [Cacng2 (Ca 2ϩ channel ␥2 subunit)] is one of four closely related proteins recently categorized as transmembrane AMPA receptor regulating proteins (TARPs) that appear to share similar functions but exhibit distinct expression patterns in the CNS. We used yeast two-hybrid screeningtoidentifyMAGI-2(membraneassociatedguanylatekinase,WWandPDZdomaincontaining2)asanovelcandidateinteractor with the cytoplasmic C termini of the TARPs. MAGI-2 [also known as S-SCAM (synaptic scaffolding molecule)] is a multi-PDZ domain scaffolding protein that interacts with several different ligands in brain, including PTEN (phosphatase and tensin homolog), dasm1 (dendrite arborization and synapse maturation 1), dendrin, axin, - and ␦-catenin, neuroligin, hyperpolarization-activated cation channels, 1-adrenergic receptors, and NMDA receptors. We confirmed that MAGI-2 coimmunoprecipitated with stargazin in vivo from mouse cerebral cortex and used in vitro assays to localize the interaction to the C-terminal -TTPV amino acid motif of stargazin and the PDZ1, PDZ3, and PDZ5 domains of MAGI-2. -
Local Protein Translation and RNA Processing of Synaptic Proteins in Autism Spectrum Disorder
International Journal of Molecular Sciences Review Local Protein Translation and RNA Processing of Synaptic Proteins in Autism Spectrum Disorder Yuyoung Joo * and David R. Benavides Department of Neurology, University of Maryland School of Medicine, Baltimore, MD 21201, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-410-706-5799 Abstract: Autism spectrum disorder (ASD) is a heritable neurodevelopmental condition associated with impairments in social interaction, communication and repetitive behaviors. While the under- lying disease mechanisms remain to be fully elucidated, dysfunction of neuronal plasticity and local translation control have emerged as key points of interest. Translation of mRNAs for critical synaptic proteins are negatively regulated by Fragile X mental retardation protein (FMRP), which is lost in the most common single-gene disorder associated with ASD. Numerous studies have shown that mRNA transport, RNA metabolism, and translation of synaptic proteins are important for neuronal health, synaptic plasticity, and learning and memory. Accordingly, dysfunction of these mechanisms may contribute to the abnormal brain function observed in individuals with autism spectrum disorder (ASD). In this review, we summarize recent studies about local translation and mRNA processing of synaptic proteins and discuss how perturbations of these processes may be related to the pathophysiology of ASD. Keywords: local translation; RNA processing; RNA binding protein; synaptic protein; neuronal plasticity; autism Citation: Joo, Y.; Benavides, D.R. Local Protein Translation and RNA Processing of Synaptic Proteins in Autism Spectrum Disorder. Int. J. Mol. 1. Introduction Sci. 2021, 22, 2811. https://doi.org/ Autism spectrum disorder (ASD) represents a group of neurodevelopmental disorders 10.3390/ijms22062811 characterized by impairments in communication and social behavior. -
Nanoscale Imaging Reveals Mirna-Mediated Control of Functional States of Dendritic Spines
Nanoscale imaging reveals miRNA-mediated control of functional states of dendritic spines Ikbum Parka,1, Hyun Jin Kimb,1, Youngkyu Kimc,2, Hye Sung Hwangb, Haruo Kasaid, Joung-Hun Kimb,3, and Joon Won Parka,c,3 aDivision of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Nam-Gu, 37673 Pohang, Korea; bDepartment of Life Sciences, Pohang University of Science and Technology, Nam-Gu, 37673 Pohang, Korea; cDepartment of Chemistry, Pohang University of Science and Technology, Nam-Gu, 37673 Pohang, Korea; and dLaboratory of Structural Physiology, Center for Disease Biology and Integrative Medicine, Faculty of Medicine, The University of Tokyo, Bunkyo-ku, Tokyo, Japan Edited by Solomon H. Snyder, Johns Hopkins University School of Medicine, Baltimore, MD, and approved March 28, 2019 (received for review November 13, 2018) Dendritic spines are major loci of excitatory inputs and undergo in synaptic structures, largely due to resolution limits imposed by activity-dependent structural changes that contribute to synaptic conventional miRNA detection methods including in situ hybrid- plasticity and memory formation. Despite the existence of various ization (18–20) and fluorophore-labeled probes (14, 15, 18–23). classification types of spines, how they arise and which molecular Atomic force microscopy (AFM) enables multiparametric components trigger their structural plasticity remain elusive. nanoscale imaging for topography and stiffness, even under microRNAs (miRNAs) have emerged as critical regulators of synapse physiological conditions (24–27). In particular, AFM tips com- development and plasticity via their control of gene expression. prise molecular probes that bind to specific targets, thereby Brain-specific miR-134s likely regulate the morphological maturation of generating specific adhesion signals characterized by force- spines, but their subcellular distributions and functional impacts have distance curves (28–30). -
Dynamic Spatio-Temporal Control of Neuronal Gene Expression 437
Author's personal copy ! Dendritic RNA Transport: Dynamic Spatio-Temporal Control of Neuronal Gene Expression 437 Dendritic, RNA Transport: Dynamic Spatio-Temporal Control of , Neuronal, Gene Expression , J B Dictenberg, , Hunter College, New York, NY, USA response to neuronal stimulation, an idea that currently R H Singer, , Albert Einstein College of Medicine, Bronx, has enormous support and has led to breakthroughs NY, USA, in visualizing specific transcript motility in living cells. , ã 2009 Elsevier, Ltd. All rights reserved. , Structure and Composition of Dendritic , Transport mRNPs , mRNAs are transported into dendrites in the form of Introduction, , large, electron-dense RNA- and protein-containing Dendrites, are master integrators of information flow granules. Since these transport granules are distinct , in the brai, n and the sites of postsynaptic structural from stress granules, they will be referred to as trans- modificati, ons that regulate the plasticity of synapse port messenger ribonucleoproteins (mRNPs). Neu- strength ,in response to neurotransmission. Recent ronal cytoplasmic transport mRNPs appear quite data sugg,est that dendrites are also an important site heterogeneous in size and have been estimated , for the dyn, amic regulation of localized gene expression by ultrastructural methods to be between 200 and in the nervo, us system, with subsets of synapses possess- 600 mm in diameter and greater in mass than polyri- ing the ab,ility to independently alter synapse strength bosome complexes (>500 S). They are formed initi- , through th, e local synthesis of proteins. An important ally when nucleocytoplasmic shuttling RNA-binding componen, t to this regulation is the active transport of a proteins (RBPs) associate with nascent transcripts in select grou, p of messenger RNAs (mRNAs) from the the nucleus to prevent premature ribosomal loading , cell body ,into dendrites and targeting of these mRNAs and translation and to aid in nuclear export of to specific, translation sites. -
Interfering with the Actin Network and Its Effect on Long-Term Potentiation and Synaptic Tagging in Hippocampal CA1 Neurons in Slices in Vitro
The Journal of Neuroscience, September 30, 2009 • 29(39):12167–12173 • 12167 Cellular/Molecular Interfering with the Actin Network and Its Effect on Long-Term Potentiation and Synaptic Tagging in Hippocampal CA1 Neurons in Slices In Vitro Binu Ramachandran and Julietta U. Frey Department of Neurophysiology, Leibniz Institute for Neurobiology, 39118 Magdeburg, Germany Long-termpotentiation(LTP)isacellularcorrelateformemoryformation,whichrequiresthedynamicchangesoftheactincytoskeleton. As shown by others, the polymerization of the actin network is important for early stages of LTP. Here, we investigated the role of actin dynamics in synaptic tagging and particularly in the induction of protein synthesis-dependent late-LTP in the CA1 region in hippocampal slices in vitro. We found that the inhibition of actin polymerization affects protein synthesis-independent early-LTP, prevents late-LTP, and interferes with synaptic tagging in apical dendrites of hippocampal CA1. The transformation of early-LTP into late-LTP was blocked by the application of the structurally different actin polymerization inhibitors latrunculin A or cytochalasin D. We suggest that the actin network is required for early “housekeeping” processes to induce and maintain early-LTP. Furthermore, inhibition of actin dynamics negatively interacts with the setting of the synaptic tagging complex. We propose actin as a further tag-specific molecule in apical CA1 dendrites where it is directly involved in the tagging/capturing machinery. Consequently, inhibition of the actin network prevents the interaction of tagging complexes with plasticity-related proteins. This results in the prevention of late-LTP by inhibition of the actin network during LTP induction. Introduction The actin network plays an important, multifunctional role in Changes in synaptic efficacy are considered as basic processes of synaptic function as well as during plasticity and, specifically, in information storage in the brain. -
Relevance of Synaptic Tagging and Capture to the Persistence of Long-Term Potentiation and Everyday Spatial Memory
Relevance of synaptic tagging and capture to the persistence of long-term potentiation and everyday spatial memory Szu-Han Wang, Roger L. Redondo, and Richard G. M. Morris1 Centre for Cognitive and Neural Systems, Neuroscience, University of Edinburgh, Edinburgh EH8 9JZ, United Kingdom Edited* by Richard D. Palmiter, University of Washington, Seattle, WA, and approved September 21, 2010 (received for review June 22, 2010) Memory for inconsequential events fades, unless these happen generally forgotten each day. This is a closer analogy to everyday before or after other novel or surprising events. However, our memory in humans than many current behavioral tasks studied in understanding of the neurobiological mechanisms of novelty- animals, and is likely subserved by temporary engrams mediated by enhanced memory persistence is mainly restricted to aversive or distributed associative potentiation in the hippocampus. fear-associated memories. We now outline an “everyday appetitive” Interestingly, unrelated novelty or surprise may stabilize the behavioral model to examine whether and how unrelated novelty persistence of memories, even for inconsequential events that facilitates the persistence of spatial memory coupled to parallel elec- are normally forgotten. An example of this is the curious halo of “fl ” trophysiological studies of the persistence of long-term potentiation incidental memories surrounding ashbulb memories (10, 11), (LTP). Across successive days, rats were given one trial per day to find such as what happened to us on the occasion of momentous food in different places and later had to recall that day’s location. events such as the terrorist attacks in 2001 in the 9/11 tragedy. It This task is both hippocampus and NMDA receptor dependent. -
Nuclear Relocation of the Nephrin and CD2AP-Binding Protein Dendrin Promotes Apoptosis of Podocytes
Nuclear relocation of the nephrin and CD2AP-binding protein dendrin promotes apoptosis of podocytes Katsuhiko Asanuma*, Kirk Nicholas Campbell, Kwanghee Kim, Christian Faul, and Peter Mundel† Department of Medicine, Mount Sinai School of Medicine, New York, NY 10029 Edited by Marilyn Gist Farquhar, University of California at San Diego School of Medicine, La Jolla, CA, and approved April 28, 2007 (received for review February 1, 2007) Kidney podocytes and their slit diaphragms (SDs) form the final Results barrier to urinary protein loss. There is mounting evidence that SD Dendrin Is a Component of the SD Complex. Dendrin contains two proteins also participate in intracellular signaling pathways. The SD putative nuclear localization signals (NLSs) and three PPXY protein nephrin serves as a component of a signaling complex that motifs that are preserved among human, rat, and mouse (Fig. directly links podocyte junctional integrity to actin cytoskeletal 1a). To explore the renal expression of dendrin, we generated dynamics. Another SD protein, CD2-associated protein (CD2AP), is and affinity-purified a peptide antibody against the C terminus an adaptor molecule involved in podocyte homeostasis that can of mouse dendrin. This antibody detected the previously de- repress proapoptotic TGF- signaling in podocytes. Here we show scribed 89-kDa and 81-kDa isoforms of dendrin in the brain but that dendrin, a protein originally identified in telencephalic den- only the 81-kDa isoform in isolated glomeruli (Fig. 1b). By drites, is a constituent of the SD complex, where it directly binds immunofluorescence microscopy of adult mouse kidney, dendrin to nephrin and CD2AP. In experimental glomerulonephritis, den- was detected exclusively in glomeruli (Fig.