Evolution of Cam and C4 Carbon-Concentrating Mechanisms
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A Phylogeny of the Hubbardochloinae Including Tetrachaete (Poaceae: Chloridoideae: Cynodonteae)
Peterson, P.M., K. Romaschenko, and Y. Herrera Arrieta. 2020. A phylogeny of the Hubbardochloinae including Tetrachaete (Poaceae: Chloridoideae: Cynodonteae). Phytoneuron 2020-81: 1–13. Published 18 November 2020. ISSN 2153 733 A PHYLOGENY OF THE HUBBARDOCHLOINAE INCLUDING TETRACHAETE (CYNODONTEAE: CHLORIDOIDEAE: POACEAE) PAUL M. PETERSON AND KONSTANTIN ROMASCHENKO Department of Botany National Museum of Natural History Smithsonian Institution Washington, D.C. 20013-7012 [email protected]; [email protected] YOLANDA HERRERA ARRIETA Instituto Politécnico Nacional CIIDIR Unidad Durango-COFAA Durango, C.P. 34220, México [email protected] ABSTRACT The phylogeny of subtribe Hubbardochloinae is revisited, here with the inclusion of the monotypic genus Tetrachaete, based on a molecular DNA analysis using ndhA intron, rpl32-trnL, rps16 intron, rps16- trnK, and ITS markers. Tetrachaete elionuroides is aligned within the Hubbardochloinae and is sister to Dignathia. The biogeography of the Hubbardochloinae is discussed, its origin likely in Africa or temperate Asia. In a previous molecular DNA phylogeny (Peterson et al. 2016), the subtribe Hubbardochloinae Auquier [Bewsia Gooss., Dignathia Stapf, Gymnopogon P. Beauv., Hubbardochloa Auquier, Leptocarydion Hochst. ex Stapf, Leptothrium Kunth, and Lophacme Stapf] was found in a clade with moderate support (BS = 75, PP = 1.00) sister to the Farragininae P.M. Peterson et al. In the present study, Tetrachaete elionuroides Chiov. is included in a phylogenetic analysis (using ndhA intron, rpl32- trnL, rps16 intron, rps16-trnK, and ITS DNA markers) in order to test its relationships within the Cynodonteae with heavy sampling of species in the supersubtribe Gouiniodinae P.M. Peterson & Romasch. Chiovenda (1903) described Tetrachaete Chiov. with a with single species, T. -
Report of Science Advisors
Report of Science Advisors Solano County Natural Community Conservation Plan Habitat Conservation Plan November 2002 Reed Noss (Lead Reviewer and Editor), Ronald Amundson, Dick Arnold, Michael Bradbury, Sharon Collinge, Brenda Grewell, Richard Grosberg, Lester McKee, Phil Northen, Christina Swanson, and Ron Yoshiyama Facilitators: Bruce DiGennaro and Vance Russell TABLE OF CONTENTS Executive Summary.........................................................................................................................1 1.0 Introduction...............................................................................................................................5 1.1 Role of Science Advisors..............................................................................................5 1.2 Science Advisors Workshop.........................................................................................6 1.3 Report Organization......................................................................................................7 2.0 Regional and Historical Context...............................................................................................7 2.1 Biodiversity of the Region............................................................................................8 2.2 Geography and Geology ...............................................................................................9 2.3 Climate and Hydrology...............................................................................................14 3.0 Data Gaps and -
Greene's Tuctoria
Appendix A. Species Account Butte County Association of Governments Greene’s Tuctoria Greene’s Tuctoria (Tuctoria greenei) A.25.1 Legal and Other Status Greene’s tuctoria or Greene’s Orcutt grass (Tuctoria greenei) is listed as endangered under the federal Endangered Species Act (ESA) throughout its range and is listed as rare under the California ESA (DFG 2011). The California Native Plant Society (CNPS) includes Greene’s tuctoria in its California Rare Plant Rank 1B (formerly List 1B): Plants Rare, Threatened, or Endangered in California and Elsewhere (CNPS 2010). Critical habitat has been designated under ESA for Greene’s tuctoria, including one location in Butte County, on private property south of Chico along Highway 99 and 0.4 mile (0.64 kilometer [km]) south of the junction of Pentz Road (71 FR 7118). A.25.2 Species Distribution and Status A.25.2.1 Range and Status The current range of this species extends 258 miles (567 km) in Butte, Merced, Tehama, Shasta, and Glenn counties (62 FR 14338). Historically, the species was also reported from Fresno, Madera, San Joaquin, Stanislaus, and Tulare counties, but these populations are believed to have been extirpated (CNPS 2006). There are currently 25 extant reported occurrences for this species, 17 of which are in the Northeastern Sacramento Valley Vernal Pool Region, including 10 in the vicinity of Vina Plains in Tehama County and 7 in Butte County. The next largest concentration is in the Southern Sierra Foothills Vernal Pool Region, with seven extant occurrences in eastern Merced County. The other extant occurrence is in the Modoc Plateau Vernal Pool Region in Shasta County (CNDDB 2006). -
Vascular Plants of Vina Plains Preserve Wurlitzer Unit
DO r:r:i :;:i·,iOVE Ff.'f)l,1 . ,- . - . "'I":; Vascular Plants of Vina Plains Preserve, Wurlitzer Unit Vernon H. Oswald Vaseular Plants of Vina Plains Preserve, Wurlitzer Unit Vernon H . Oswald Department of Biological Sciences California State University, C h ico Ch ico, California 95929-0515 1997 Revision RED BLUFF •CORN ING TEHAMA CO. -------------B1JITECO. ORLAND HWY 32 FIGURE I. Location of Vina P la.ins Preserve, Main Unit on the north, Wurlitzer Unit on the south. CONTENTS Figure 1. Location of Vina Plains Preserve ...... ................................. facing contents Figure 2. Wurlitzer Unit, Vina Plains Preserve ..... ............................... facing page I Introduction .. ... ..................................... ................................ ....... ....... ... ................ I References .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ... ... .. .. .. .. .. .. .. .. .. .. 4 The Plant List: Ferns and fem allies .......... ................................................... ........... ................. 5 Di cot flowering plants ............... ...................................................... ................. 5 Monocot flowering plants .......... ..................................................................... 25 / ... n\ a: t, i. FIGURE 2. Wurlitzer Unit, Vina Plains Preserve (in yellow), with a small comer of the Main Unit showing on the north. Modified from USGS 7.5' topographic maps, Richardson Springs NW & Nord quadrangles. - - INTRODUCTION 1 A survey of the vascular flora of the Wurl itzer -
4.4 BIOLOGICAL RESOURCES 4.4.1 Regulatory Setting
Ascent Environmental Administrative Draft – For Internal Review and Deliberation Biological Resources 4.4 BIOLOGICAL RESOURCES This section describes the potential effects of the project on biological resources. This section also addresses biological resources known or with potential to occur in the project vicinity, including common vegetation and habitat types, sensitive plant communities, and special-status plant and animal species. The analysis includes a description of the existing environmental conditions, the methods used for assessment, the potential direct and indirect impacts of project implementation not included in the 2005 Subsequent Environmental Impact Report (SEIR) for the Hay Road Landfill Project (Solano County 2005), and mitigation measures recommended to address impacts determined to be significant or potentially significant. The data and documents reviewed in preparation of this analysis included: 2005 SEIR for the Hay Road Landfill Project (Solano County 2005); Burrowing Owl Habitat Assessment (ESA 2016a); California Tiger Salamander Habitat Assessment (ESA 2016b); Branchiopod Survey Report (ESA 2016c); Special-status Plant Survey Report (ESA 2016d); Organics Transload Facility Habitat Assessment (ESA 2017a); Hydro Flow Analysis (ESA 2017b); Contra Costa Goldfields Survey Report (ESA 2017c); Delta Green Ground Beetle Survey Report and Supplemental Habitat Assessment Report (Entomological Consulting Services, Ltd. 2016, 2018); reconnaissance-level survey of the project site conducted on August 7, 2017; records search and GIS query of the California Natural Diversity Database (CNDDB) within 5 miles of the project site (2018); California Native Plant Society (CNPS), Rare Plant Program database search of the Allendale, Dixon, Saxon, Elmira, Dozier, Liberty Island, Denverton, Birds Landing, and Rio Vista U.S. Geological Service 7.5-minute quadrangles (CNPS 2018); eBird online database of bird observations (eBird 2018); and aerial photographs of the project site and surrounding area. -
Cramvernal Pool Endemics-Final.Pdf
Vernal Pool Systems and Individual Vernal Pools Version 6.1 APPENDIX 1 Vernal Pool Endemic Plant List Use this list to determine if a species is a vernal pool endemic Bsed on Appendix C from: T. Keeler-Wolf, D.R. Elam, K. Lewis, S.A. Flint. 1998. California Vernal Pool Assessment Preliminary Report. State of California, The Resources Agency, Department of Fish and Game. 161 pp. www.dfg.ca.gov/biogeodata/wetlands/pdfs/VernalPoolAssessmentPreliminaryReport.pdf May 2013 ! CRAM%Vernal%Pool%Endemic%Plants%List May%2013 Scientific%Name Family Genus Species infraspecific_rank %infraspecific_epithet Agrostis(elliottiana POACEAE Agrostis elliottiana Agrostis(hendersonii POACEAE Agrostis hendersonii Agrostis(microphylla POACEAE Agrostis microphylla Alopecurus(carolinianus POACEAE Alopecurus carolinianus Alopecurus(saccatus POACEAE Alopecurus saccatus Anagallis(minima MYRSINACEAE Anagallis minima Astragalus(tener(var.(ferrisiae FABACEAE Astragalus tener var. ferrisiae Astragalus(tener(var.(tener FABACEAE Astragalus tener var. tener Atriplex(cordulata CHENOPODIACEAE Atriplex cordulata Atriplex(cordulata(var.(cordulata CHENOPODIACEAE Atriplex cordulata var. cordulata Atriplex(cordulata(var.(erecticaulis CHENOPODIACEAE Atriplex cordulata var. erecticaulis Atriplex(depressa CHENOPODIACEAE Atriplex depressa Atriplex(minuscula CHENOPODIACEAE Atriplex minuscula Atriplex(parishii CHENOPODIACEAE Atriplex parishii Atriplex(persistens CHENOPODIACEAE Atriplex persistens Atriplex(subtilis CHENOPODIACEAE Atriplex subtilis Blennosperma(bakeri ASTERACEAE Blennosperma -
Iv. County/Species List
IV. COUNTY/SPECIES LIST The following list identifies federally listed or proposed U.S. species by State and County. It has been updated through December 31, 1999. Species listed below with a status of both E and T are generally either endangered or threatened within the specified county. Designation of critical habitat (CH) does not mean that the county constitutes critical habitat, only that critical habitat has been designated for that species (see Addendum A Instructions). Action/ State/County Group name Inverse name Scientific name Status CALIFORNIA ALAMEDA ......... BIRDS ....... PELICAN, BROWN ........................................ Pelicanus occidentalis E PLOVER, WESTERN SNOWY ................................ Charadrius alexandrinus nivosus T RAIL, CALIFORNIA CLAPPER ............................... Rallus longirostris obsoletus E TERN, CALIFORNIA LEAST ................................. Sterna antillarum browni E CRUSTACEAN . LINDERIELLA, CALIFORNIA ................................ Linderiella occidentalis E SHRIMP, LONGHORN FAIRY ................................ Branchinecta longiantenna E SHRIMP, VERNAL POOL FAIRY .............................. Branchinecta lynchi T FISHES ...... GOBY, TIDEWATER ...................................... Eucyclogobius newberryi E SPLITTAIL, SACRAMENTO ................................. Pogonichthys macrolepidotus T INSECTS ..... BUTTERFLY, BAY CHECKERSPOT ........................... Euphydryas editha bayensis T MAMMALS ... FOX, SAN JOAQUIN KIT .................................... Vulpes macrotis -
United States Department of the Interior
United States Department of the Interior FISH AND WILDLIFE SERVICE Sacramento Fish and Wildlife Office 2800 Cottage Way, Room W-2605 Sacramento, California 95825 March 5, 2015 Document Number: 150305102524 Carlos Alvarado Ascent Environmental 455 Capitol Mall Suite 300 Sacramento, CA 95814 Subject: Species List for Nishi Gateway Project Dear: Mr. Alvarado We are sending this official species list in response to your March 5, 2015 request for information about endangered and threatened species. The list covers the California counties and/or U.S. Geological Survey 7½ minute quad or quads you requested. Our database was developed primarily to assist Federal agencies that are consulting with us. Therefore, our lists include all of the sensitive species that have been found in a certain area and also ones that may be affected by projects in the area. For example, a fish may be on the list for a quad if it lives somewhere downstream from that quad. Birds are included even if they only migrate through an area. In other words, we include all of the species we want people to consider when they do something that affects the environment. Please read Important Information About Your Species List (below). It explains how we made the list and describes your responsibilities under the Endangered Species Act. Our database is constantly updated as species are proposed, listed and delisted. If you address proposed and candidate species in your planning, this should not be a problem. However, we recommend that you get an updated list every 90 days. That would be June 03, 2015. -
4.4 Biological Resources
4.4 BIOLOGICAL RESOURCES This section discusses biological resources in Vacaville and evaluates the potential biological re- source impacts resulting from the spatial location of development that would be allowed by the proposed General Plan and Energy and Conservation Action Strategy (ECAS). The following evaluation assesses special-status species, sensitive biological communities, wetlands, migratory species, and policies and plans intended to protect biological resources. As noted in Chapter 3, Project Description, impacts are determined by comparing the proposed General Plan and ECAS to existing conditions, rather than to the existing General Plan. The following evaluation is based on a spatial analysis and examines the effects of the location of potential development on biological resources and identifies conflicts with plans, policies, regulations, and ordinances relating to biological resources. A. Regulatory Framework 1. Federal Laws and Regulations This section summarizes federal laws and regulations that apply to biological resources within the EIR Study Area. a. Section 404 of the Clean Water Act The US Army Corps Engineers (Corps), the federal agency charged with investigating, develop- ing, and maintaining the country’s water and related resources, is responsible under Section 404 of the Clean Water Act for regulating the discharge of fill material into waters of the United States. Waters of the United States and their lateral limits are defined in Part 328.3(a) of Title 33 of the Code of Federal Regulations (CFR) and include streams that are tributaries to navigable waters and adjacent wetlands. The lateral limits of jurisdiction for a non-tidal stream are meas- ured at the line of the Ordinary High Water Mark1 or the limit of adjacent wetlands.2 Any per- manent extension of the limits of an existing water of the United States, whether natural or hu- man-made, results in a similar extension of Corps jurisdiction.3 Waters of the United States fall into two broad categories: wetlands and other waters. -
Glume Absence in the Orcuttieae (Gramineae: Chloridoideae) and a Hypothisis of Intratribal Relationships Eric H
Aliso: A Journal of Systematic and Evolutionary Botany Volume 18 | Issue 1 Article 17 1999 Glume absence in the Orcuttieae (Gramineae: Chloridoideae) and a hypothisis of intratribal relationships Eric H. Roalson Rancho Santa Ana Botanic Garden Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Roalson, Eric H. (1999) "Glume absence in the Orcuttieae (Gramineae: Chloridoideae) and a hypothisis of intratribal relationships," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 18: Iss. 1, Article 17. Available at: http://scholarship.claremont.edu/aliso/vol18/iss1/17 Aliso, 18(1), pp. 67-70 © 1999, by The Rancho Santa Ana Botanic Garden, Claremont, CA 91711-3157 GLUME ABSENCE IN THE ORCUTTIEAE (GRAMINEAE: CHLORIDOIDEAE) AND A HYPOTHESIS OF INTRATRIBAL RELATIONSHIPS ERIC H. ROALSON AND J. TRAVIS COLUMBUS Rancho Santa Ana Botanic Garden 1500 North College Avenue Claremont, California 91711-3157 ABSTRACT This study addresses glume absence in tribe Orcuttieae. In Orcuttia califomica, 0. inaequalis, and 0. viscida, all spikelets possess two glumes except for the terminal spikelet of the inflorescence, which lacks both glumes. In 0. pilosa and Tuctoria greenei the terminal spikelet lacks only the first (prox imal) glume, whereas in 0. tenuis, T. fragilis, and T. mucronata both glumes are developed on all spikelets. This is the first report of glume absence in species of Orcuttieae other than Neostapfia colusana, which has been long reported to lack both glumes on all spikelets. A hypothesis of phylo genetic relationships in the tribe is presented and characters involved are discussed. We hypothesize Neostapfia to be sister to a Tuctoria/Orcuttia clade, and Tuctoria to be a grade leading to a mono phyletic Orcuttia. -
California Fish and Game 100(1):7-8; 2014
Winter 2014 1 CALIFORNIA FISH AND GAME “Conservation of Wild Life Through Education” Volume 100 Winter 2014 Number 1 Special Native Plant Issue Gilia tricolor, CDFW Photo by Jeb Bjerke Gilia tricolor, Forests, water power, and wild game are three of California’s greatest resources. They are ours to use but not to destroy. The United States Department of Agriculture says: “The free marketing of wild game leads swiftly to extermination.” —Yearbook, 1910, page 254 Published Quarterly by the California Department of Fish and Wildlife. CALIFORNIA STATE PRINTING OFFICE 2 CALIFORNIA FISH AND GAME Vol. 100, No. 1 FRONTISPIECE.—The first issue ofCalifornia Fish and Game was published in October, 1914. Volume 1 consisted of a total of 5 issues, four of which were published in 1915. Publication has occurred on a quarterly basis beginning with volume 2 in 1916. Winter 2014 3 VOLUME 100 WINTER 2014 NUMBER 1 Published Quarterly by STATE OF CALIFORNIA CALIFORNIA NATURAL RESOURCES AGENCY DEPARTMENT OF FISH AND WILDLIFE ISSN: 0008-1078 (print) ISSN: 2331-0405 (online) --LDA-- 4 CALIFORNIA FISH AND GAME Vol. 100, No. 1 STATE OF CALIFORNIA Jerry Brown, Governor CALIFORNIA NATURAL RESOURCES AGENCY John Laird, Secretary for Natural Resources FISH AND GAME COMMISSION Michael Sutton, President Jack Baylis, Vice President Jim Kellogg, Member Richard B. Rogers, Member Jacque Hostler-Carmesin, Member Sonke Mastrup, Executive Director DEPARTMENT OF FISH AND WILDLIFE Charlton “Chuck” Bonham, Director CALIFORNIA FISH AND GAME EDITORIAL STAFF Vern Bleich ........................................................................................Editor-in-Chief Debra Hamilton ............ Office of Communication, Education and Outreach -AVU Jeff Villepique, Steve Parmenter ........................................... Inland Deserts Region Scott Osborn, Laura Patterson, Levi Souza, Joel Trumbo .............. -
A Molecular Phylogeny and Classification of the Cynodonteae
TAXON 65 (6) • December 2016: 1263–1287 Peterson & al. • Phylogeny and classification of the Cynodonteae A molecular phylogeny and classification of the Cynodonteae (Poaceae: Chloridoideae) with four new genera: Orthacanthus, Triplasiella, Tripogonella, and Zaqiqah; three new subtribes: Dactylocteniinae, Orininae, and Zaqiqahinae; and a subgeneric classification of Distichlis Paul M. Peterson,1 Konstantin Romaschenko,1,2 & Yolanda Herrera Arrieta3 1 Smithsonian Institution, Department of Botany, National Museum of Natural History, Washington, D.C. 20013-7012, U.S.A. 2 M.G. Kholodny Institute of Botany, National Academy of Sciences, Kiev 01601, Ukraine 3 Instituto Politécnico Nacional, CIIDIR Unidad Durango-COFAA, Durango, C.P. 34220, Mexico Author for correspondence: Paul M. Peterson, [email protected] ORCID PMP, http://orcid.org/0000-0001-9405-5528; KR, http://orcid.org/0000-0002-7248-4193 DOI https://doi.org/10.12705/656.4 Abstract Morphologically, the tribe Cynodonteae is a diverse group of grasses containing about 839 species in 96 genera and 18 subtribes, found primarily in Africa, Asia, Australia, and the Americas. Because the classification of these genera and spe cies has been poorly understood, we conducted a phylogenetic analysis on 213 species (389 samples) in the Cynodonteae using sequence data from seven plastid regions (rps16-trnK spacer, rps16 intron, rpoC2, rpl32-trnL spacer, ndhF, ndhA intron, ccsA) and the nuclear ribosomal internal transcribed spacer regions (ITS 1 & 2) to infer evolutionary relationships and refine the