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A Phylogeny of the Hubbardochloinae Including Tetrachaete (Poaceae: Chloridoideae: Cynodonteae)
Peterson, P.M., K. Romaschenko, and Y. Herrera Arrieta. 2020. A phylogeny of the Hubbardochloinae including Tetrachaete (Poaceae: Chloridoideae: Cynodonteae). Phytoneuron 2020-81: 1–13. Published 18 November 2020. ISSN 2153 733 A PHYLOGENY OF THE HUBBARDOCHLOINAE INCLUDING TETRACHAETE (CYNODONTEAE: CHLORIDOIDEAE: POACEAE) PAUL M. PETERSON AND KONSTANTIN ROMASCHENKO Department of Botany National Museum of Natural History Smithsonian Institution Washington, D.C. 20013-7012 [email protected]; [email protected] YOLANDA HERRERA ARRIETA Instituto Politécnico Nacional CIIDIR Unidad Durango-COFAA Durango, C.P. 34220, México [email protected] ABSTRACT The phylogeny of subtribe Hubbardochloinae is revisited, here with the inclusion of the monotypic genus Tetrachaete, based on a molecular DNA analysis using ndhA intron, rpl32-trnL, rps16 intron, rps16- trnK, and ITS markers. Tetrachaete elionuroides is aligned within the Hubbardochloinae and is sister to Dignathia. The biogeography of the Hubbardochloinae is discussed, its origin likely in Africa or temperate Asia. In a previous molecular DNA phylogeny (Peterson et al. 2016), the subtribe Hubbardochloinae Auquier [Bewsia Gooss., Dignathia Stapf, Gymnopogon P. Beauv., Hubbardochloa Auquier, Leptocarydion Hochst. ex Stapf, Leptothrium Kunth, and Lophacme Stapf] was found in a clade with moderate support (BS = 75, PP = 1.00) sister to the Farragininae P.M. Peterson et al. In the present study, Tetrachaete elionuroides Chiov. is included in a phylogenetic analysis (using ndhA intron, rpl32- trnL, rps16 intron, rps16-trnK, and ITS DNA markers) in order to test its relationships within the Cynodonteae with heavy sampling of species in the supersubtribe Gouiniodinae P.M. Peterson & Romasch. Chiovenda (1903) described Tetrachaete Chiov. with a with single species, T. -
Analysis of the Giant Genomes of Fritillaria (Liliaceae) Indicates That a Lack of DNA Removal Characterizes Extreme Expansions in Genome Size
CORE Metadata, citation and similar papers at core.ac.uk Provided by Queen Mary Research Online Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size. Kelly, LJ; Renny-Byfield, S; Pellicer, J; Macas, J; Novák, P; Neumann, P; Lysak, MA; Day, PD; Berger, M; Fay, MF; Nichols, RA; Leitch, AR; Leitch, IJ © 2015 The Authors. CC-BY For additional information about this publication click this link. http://qmro.qmul.ac.uk/jspui/handle/123456789/8496 Information about this research object was correct at the time of download; we occasionally make corrections to records, please therefore check the published record when citing. For more information contact [email protected] Research Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size Laura J. Kelly1,2, Simon Renny-Byfield1,3, Jaume Pellicer2,Jirı Macas4, Petr Novak4, Pavel Neumann4, Martin A. Lysak5, Peter D. Day1,2, Madeleine Berger2,6,7, Michael F. Fay2, Richard A. Nichols1, Andrew R. Leitch1 and Ilia J. Leitch2 1School of Biological and Chemical Sciences, Queen Mary University of London, London, E1 4NS, UK; 2Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, UK; 3 4 Department of Plant Sciences, University of California Davis, Davis, CA 95616, USA; Biology Centre CAS, Institute of Plant Molecular Biology, CZ-37005, Ceske Budejovice, Czech Republic; 5Plant Cytogenomics Research Group, CEITEC – Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500, Brno, Czech Republic; 6School of Biological and Biomedical Sciences, Durham University, South Road, Durham DH1 3LE, UK; 7Rothamsted Research, West Common, Harpenden, Hertfordshire, AL5 2JQ, UK Summary Authors for correspondence: Plants exhibit an extraordinary range of genome sizes, varying by > 2000-fold between the Laura J. -
Potrero Hills Landfill EIR EDAW Solano County 4.2-1 Biological Resources Proposed Phase II Expansion Area
4.2 BIOLOGICAL RESOURCES The project applicant contracted with Environmental Stewardship & Planning, Inc. to conduct biological surveys for the Phase II Project, which is included as Appendix B. The biological surveys prepared by Environmental Stewardship & Planning, Inc. were reviewed by EDAW for consistency with industry-accepted standards. Based on this review and a site reconnaissance conducted by an EDAW biologist, the biological surveys were deemed to adequately characterize the existing biological resources on the project site and in the project vicinity. The information included in the biological surveys and supplemental biological data provide the basis for the analysis included in this section. 4.2.1 EXISTING CONDITIONS The project site is located in the secondary management area of the Suisun Marsh. It is a biologically diverse region that supports a varied assemblage of plant and wildlife species. The Potrero Hills are a series of steep, rolling hills that form an island of upland habitat almost completely surrounded by Suisun Marsh. Extensive areas of grazed grassland are located north of the site. GENERAL BIOLOGICAL RESOURCES Vegetation Currently Permitted Landfill The currently permitted 320-acre landfill is located in the central portion of the interior valley of the Potrero Hills in the secondary management area of the Suisun Marsh. The Potrero Hills are located about 5 miles east of downtown Fairfield, in Solano County, south of State Route (SR) 12. A large portion of the currently permitted landfill has been disturbed to accommodate existing landfill activities, and the remaining natural areas are dominated by non-native grassland habitat. Disturbed areas either are devoid of vegetation or support weedy vegetation, forming a ruderal habitat. -
Fountaingrove Lodge Appendix G Rare Plant Report
Appendix G Rare Plant Survey Report Rare Plant Survey Report FOUNTAINGROVE LODGE SANTA ROSA, SONOMA COUNTY CALIFORNIA Prepared For: Mr. Steve McCullagh Aegis Senior Living 220 Concourse Blvd. Santa Rosa, California 95403 Contact: Tom Fraser [email protected] Date: May 2007 2169-G Ea st Fra nc isc o Blvd ., Sa n Ra fa e l, C A 94901 (415) 454-8868 te l (415) 454-0129 fa x info @w ra -c a .c o m www.wra-ca.com TABLE OF CONTENTS 1.0 INTRODUCTION.........................................................1 1.1 Study Area Description...............................................1 1.1.1 Vegetation................................................1 1.1.2 Soils.....................................................4 2.0 METHODS..............................................................6 2.1 Background Data...................................................6 2.2 Field Survey.......................................................6 3.0 RESULTS. .............................................................7 3.1 Background Data Search Results.......................................7 3.2 Field Survey Results.................................................7 4.0 CONCLUSIONS..........................................................7 5.0 REFERENCES...........................................................8 LIST OF FIGURES Figure 1. Location Map of Fountaingrove Lodge site. 2 Figure 2. Biological Communities within the Fountaingrove Lodge site. 3 Figure 3. Soils Map for the Fountaingrove Lodge site. 5 LIST OF APPENDICES Appendix A Study Area Photographs Appendix B Special Status Plant Species Documented to Occur in the Vicinity of the Study Area Appendix C List of Observed Plant Species 1.0 INTRODUCTION This report presents the results of 5 separate special status plant surveys conducted on approximately 9.85 acres to be developed as Fountaingrove Lodge (Study Area) in Santa Rosa, Sonoma County, California (Figure 1). The purpose of this study is to identify the location and presence of potentially occurring sensitive plant species. -
Botanical Priority Guidebook
Botanical Priority Protection Areas Alameda and Contra Costa Counties the East Bay Regional Park District. However, certain BPPAs include Hills have been from residential development. public parcels or properties with other conservation status. These are cases where land has been conserved since the creation of these boundaries or where potential management decisions have the poten- Following this initial mapping effort, the East Bay Chap- \ ntroduction tial to negatively affect an area’s botanical resources. Additionally, ter’s Conservation Committee began to utilize the con- each acre within these BPPAs represents a potential area of high pri- cept in draft form in key local planning efforts. Lech ority. Both urban and natural settings are included within these Naumovich, the chapter’s Conservation Analyst staff The lands that comprise the East Bay Chapter are located at the convergence boundaries, therefore, they are intended to be considered as areas person, showcased the map set in forums such as the of the San Francisco Bay, the North and South Coast Ranges, the Sacra- warranting further scrutiny due to the abundance of nearby sensitive BAOSC’s Upland Habitat Goals Project and the Green mento-San Joaquin Delta, and the San Joaquin Valley. The East Bay Chapter botanical resources supported by high quality habitat within each E A S T B A Y Vision Group (in association with Greenbelt Alliance); area supports a unique congregation of ecological conditions and native BPPA. Although a parcel, available for preservation through fee title C N P S East Bay Regional Park District’s Master Plan Process; plants. Based on historic botanical collections, the pressures from growth- purchase or conservation easement, may be located within the and local municipalities. -
Minor Revisions to the Draft Eir
4.0 MINOR REVISIONS TO THE DRAFT EIR 4.0 MINOR REVISIONS TO THE DRAFT EIR 4.1 INTRODUCTION This section includes minor edits to the Draft EIR. These modifications resulted in response to comments received during the Draft SEIR public review period as well as staffinitiated changes. Revisions herein do not result in new significant environmental impacts, do not constitute significant new information, nor do they alter the conclusions of the environmental analysis. Changes are provided in revision marks (underline for new text and strike out for deleted text). 4.2 MINOR CHANGES AND EDITS TO THE DRAFT EIR 3.0 PROJECT DESCRIPTION • Draft EIR page 3.0-1, the following changes are made to the first paragraph: “The Town of Corte Madera Planning Area consists of approximately 2,500 acres, or four square miles, plus 400 acres of additional lands outside the Town limits which encompass open space lands within Marin County and waters of the San Francisco Bay. Corte Madera is located in Marin County, approximately nine miles north of San Francisco, with its eastern border on the San Francisco Bay and its western edge bordered by unincorporated Marin County lands. • Draft EIR page 3.0-1, the following changes are made to the second paragraph: “The effective Planning Area boundary for the General Plan is coterminous with the Town’s Sphere of Influence, which includes all lands within the incorporated Town limits, as well as a large area within San Francisco Bay (east of the Town limits), lands just beyond the southern Town limit near Tiburon, and the Ring Mountain Open Space Preserve, and the area encompassed by the Greenbrae Boardwalk area at the north edge of the Town near Highway 101 and the northern edge of the Corte Madera State Ecological Reserve.” 4.0 ENVIRONMENTAL SETTING AND ASSUMPTIONS USED No changes were made to this section. -
Report of Science Advisors
Report of Science Advisors Solano County Natural Community Conservation Plan Habitat Conservation Plan November 2002 Reed Noss (Lead Reviewer and Editor), Ronald Amundson, Dick Arnold, Michael Bradbury, Sharon Collinge, Brenda Grewell, Richard Grosberg, Lester McKee, Phil Northen, Christina Swanson, and Ron Yoshiyama Facilitators: Bruce DiGennaro and Vance Russell TABLE OF CONTENTS Executive Summary.........................................................................................................................1 1.0 Introduction...............................................................................................................................5 1.1 Role of Science Advisors..............................................................................................5 1.2 Science Advisors Workshop.........................................................................................6 1.3 Report Organization......................................................................................................7 2.0 Regional and Historical Context...............................................................................................7 2.1 Biodiversity of the Region............................................................................................8 2.2 Geography and Geology ...............................................................................................9 2.3 Climate and Hydrology...............................................................................................14 3.0 Data Gaps and -
Greene's Tuctoria
Appendix A. Species Account Butte County Association of Governments Greene’s Tuctoria Greene’s Tuctoria (Tuctoria greenei) A.25.1 Legal and Other Status Greene’s tuctoria or Greene’s Orcutt grass (Tuctoria greenei) is listed as endangered under the federal Endangered Species Act (ESA) throughout its range and is listed as rare under the California ESA (DFG 2011). The California Native Plant Society (CNPS) includes Greene’s tuctoria in its California Rare Plant Rank 1B (formerly List 1B): Plants Rare, Threatened, or Endangered in California and Elsewhere (CNPS 2010). Critical habitat has been designated under ESA for Greene’s tuctoria, including one location in Butte County, on private property south of Chico along Highway 99 and 0.4 mile (0.64 kilometer [km]) south of the junction of Pentz Road (71 FR 7118). A.25.2 Species Distribution and Status A.25.2.1 Range and Status The current range of this species extends 258 miles (567 km) in Butte, Merced, Tehama, Shasta, and Glenn counties (62 FR 14338). Historically, the species was also reported from Fresno, Madera, San Joaquin, Stanislaus, and Tulare counties, but these populations are believed to have been extirpated (CNPS 2006). There are currently 25 extant reported occurrences for this species, 17 of which are in the Northeastern Sacramento Valley Vernal Pool Region, including 10 in the vicinity of Vina Plains in Tehama County and 7 in Butte County. The next largest concentration is in the Southern Sierra Foothills Vernal Pool Region, with seven extant occurrences in eastern Merced County. The other extant occurrence is in the Modoc Plateau Vernal Pool Region in Shasta County (CNDDB 2006). -
Vascular Plants of Vina Plains Preserve Wurlitzer Unit
DO r:r:i :;:i·,iOVE Ff.'f)l,1 . ,- . - . "'I":; Vascular Plants of Vina Plains Preserve, Wurlitzer Unit Vernon H. Oswald Vaseular Plants of Vina Plains Preserve, Wurlitzer Unit Vernon H . Oswald Department of Biological Sciences California State University, C h ico Ch ico, California 95929-0515 1997 Revision RED BLUFF •CORN ING TEHAMA CO. -------------B1JITECO. ORLAND HWY 32 FIGURE I. Location of Vina P la.ins Preserve, Main Unit on the north, Wurlitzer Unit on the south. CONTENTS Figure 1. Location of Vina Plains Preserve ...... ................................. facing contents Figure 2. Wurlitzer Unit, Vina Plains Preserve ..... ............................... facing page I Introduction .. ... ..................................... ................................ ....... ....... ... ................ I References .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ... ... .. .. .. .. .. .. .. .. .. .. 4 The Plant List: Ferns and fem allies .......... ................................................... ........... ................. 5 Di cot flowering plants ............... ...................................................... ................. 5 Monocot flowering plants .......... ..................................................................... 25 / ... n\ a: t, i. FIGURE 2. Wurlitzer Unit, Vina Plains Preserve (in yellow), with a small comer of the Main Unit showing on the north. Modified from USGS 7.5' topographic maps, Richardson Springs NW & Nord quadrangles. - - INTRODUCTION 1 A survey of the vascular flora of the Wurl itzer -
4.4 BIOLOGICAL RESOURCES 4.4.1 Regulatory Setting
Ascent Environmental Administrative Draft – For Internal Review and Deliberation Biological Resources 4.4 BIOLOGICAL RESOURCES This section describes the potential effects of the project on biological resources. This section also addresses biological resources known or with potential to occur in the project vicinity, including common vegetation and habitat types, sensitive plant communities, and special-status plant and animal species. The analysis includes a description of the existing environmental conditions, the methods used for assessment, the potential direct and indirect impacts of project implementation not included in the 2005 Subsequent Environmental Impact Report (SEIR) for the Hay Road Landfill Project (Solano County 2005), and mitigation measures recommended to address impacts determined to be significant or potentially significant. The data and documents reviewed in preparation of this analysis included: 2005 SEIR for the Hay Road Landfill Project (Solano County 2005); Burrowing Owl Habitat Assessment (ESA 2016a); California Tiger Salamander Habitat Assessment (ESA 2016b); Branchiopod Survey Report (ESA 2016c); Special-status Plant Survey Report (ESA 2016d); Organics Transload Facility Habitat Assessment (ESA 2017a); Hydro Flow Analysis (ESA 2017b); Contra Costa Goldfields Survey Report (ESA 2017c); Delta Green Ground Beetle Survey Report and Supplemental Habitat Assessment Report (Entomological Consulting Services, Ltd. 2016, 2018); reconnaissance-level survey of the project site conducted on August 7, 2017; records search and GIS query of the California Natural Diversity Database (CNDDB) within 5 miles of the project site (2018); California Native Plant Society (CNPS), Rare Plant Program database search of the Allendale, Dixon, Saxon, Elmira, Dozier, Liberty Island, Denverton, Birds Landing, and Rio Vista U.S. Geological Service 7.5-minute quadrangles (CNPS 2018); eBird online database of bird observations (eBird 2018); and aerial photographs of the project site and surrounding area. -
Anthony Chabot Plants
Anthony Chabot Plants A photographic guide to wild plants of Anthony Chabot Regional Park Sorted by Scientific Name Photographs by Wilde Legard Botanist, East Bay Regional Park District Revision: February 23, 2007 More than 2,000 species of native and naturalized plants grow wild in the San Francisco Bay Area. Most are very difficult to identify without the help of good illustrations. This is designed to be a simple, color photo guide to help you identify some of these plants. The selection of plants displayed in this guide is by no means complete. The intent is to expand the quality and quantity of photos over time. The revision date is shown on the cover and on the header of each photo page. A comprehensive plant list for this area (including the many species not found in this publication) can be downloaded at the East Bay Regional Park District’s wild plant download page at: http://www.ebparks.org. This guide is published electronically in Adobe Acrobat® format to accommodate these planned updates. You have permission to freely download, distribute, and print this pdf for individual use. You are not allowed to sell the electronic or printed versions. In this version of the guide, the included plants are sorted alphabetically by scientific name. Under each photograph are four lines of information, based on upon the current standard wild plant reference for California: The Jepson Manual: Higher Plants of California, 1993. Scientific Name Scientific names revised since 1993 are NOT included in this edition. Common Name These non-standard names are based on Jepson and other local references. -
Description Habitat Range/Distribution References
DRAFT Endangered, Threatened, and Candidate Species Manual conspicuous, rounded head. Showy Indian clover blooms SHOWY INDIAN CLOVER (TRIFOLIUM AMOENUM) between April and June. Federal/California status: Endangered/-- California Native Plant Society List 1B Habitat This species has been found in coastal scrub areas and grasslands in moist, heavy soils. Range/distribution Within the project area, it was known historically from Alameda and Santa Clara counties, but the closest it has been found in recent years is Marin County. Photo: ©Doreen L. Smith, from URL: http://elib.cs.berkeley.edu/cgi/img_query?where- taxon=Trifolium+amoenum References CalFlora: Information on California plants for education, research and conservation. [web application]. 2000. Berkeley, California: The CalFlora Database [a non- profit organization]. Available: URL: http://www.calflora.org/. [Accessed: September 5, 2002] Digital Library Project, University of California, Berkeley Available: URL: http://elib.cs.berkeley.edu/photos/. [Accessed: September 5, 2002] Isely, D. 1993. Trifolium. Pages 646-654 in The Jepson manual: higher plants of California (J.C. Hickman, editor). University of California Press, Berkeley, CA, Description 1400 pp. Showy Indian clover is an annual herb in the pea family ( Munz, P.A. 1959. A California flora. University of California Fabaceae ). The hairy stems vary from 4 to 24 inches (10 Press, Berkeley, 1681 pp. to 60 cm) tall. As is typical for clovers, the leaves consist of a long leafstalk with three leaflets (segments) that meet Tibor, D.P., editor. 2001. California Native Plant Society's at a central point. Each leaflet is broadly egg-shaped. The Inventory of Rare and Endangered Plants of individual flowers, which are narrow and pea-like, are California.