Optical Properties and Denaturation by Guanidinium Chloride and Urea

Total Page:16

File Type:pdf, Size:1020Kb

Optical Properties and Denaturation by Guanidinium Chloride and Urea Biochem. J. (1977) 161, 321-331 321 Printed in Great Britain Optical Properties and Denaturation by Guanidinium Chloride and Urea of the Adenosine Triphosphatase of Micrococcus lysodeikticus A COMPARISON OF FOUR MOLECULAR FORMS OF THE ENZYME By MANUEL NIETO and JUAN A. AYALA Seccion de Bioquimica de Membranas, Centro de Investigaciones Biol6gicas, Veldzquez 144, Madrid-6, Spain (Received 7 July 1976) 1. The fluorescence and circular dichroism offour homogeneous preparations of ATPase (adenosine triphosphatase) fromMicrococcus lysodeikticus differing in molecular structure and enzymic properties were examined at pH 7.5 and 25°C. Emission was maximum at 325 and 335nm and the relative intensities at these wavelengths may be used to characterize the different ATPase preparations. The circular-dichroism spectra exhibited negative extrema at 208 and 220nm, and the relative value of the molar ellipticity at these wave- lengths was also different for each molecular form ofthe enzyme. 2. The four preparations undergo two consecutive major unfolding transitions in guanidinium chloride (midpoints at 0.94 and 1.5 M denaturant), with concomitant destruction ofthe quaternary structure of the protein. A comparatively minor alteration in the ATPase structure also occurred in 0.05-0.2M-guanidine and led to complete inactivation ofthe enzyme. The inactivation and the first unfolding transition were reversible by dilution of the denaturant; the transition with midpoint at 1.5M-guanidine was irreversible. 3. Similar results were obtained in urea, except that the successive transitions had midpoints at concentrations of denaturant of 0.4, 2.0 and 4.5M. Low concentrations of urea caused a noticeable activation of the enzyme activity and alterations of the electrophoretic mobility of the ATPase. 4. A model is proposed in which one of the major subunits, a, is first dissociated and unfolded rever- sibly by the denaturants, followed by the irreversible unfolding and dissociation of the other major subunit, P, from subunit a and/or the components of relative mobility 1.0 in dodecyl sulphate/polyacrylamide-gel electrophoresis (p). The ATPase* (bacterial F1, BF1, EC 3.6.1.3) of the 1975). However, we found that those conditions that membranes of Micrococcus lysodeikticus is an led to dissociation of the ATPase molecule into the energy-transducing ATPase similar to those of mito- constituent subunits also led to their irreversible chondria, chloroplasts and other bacteria (Andreu et unfolding and chemical degradation. The observa- al., 1973; Penefsky, 1974; Abrams & Smith, 1974; tion that the enzyme could be inactivated by moderate Pedersen, 1975). It can be solubilized by very mild concentrations of guanidine or urea and the activity treatment in the absence of detergent (Munoz et al., recovered by dilution or dialysis (J. M. Andreu, 1969) and purified to homogeneity (Andreu et al., unpublished work) encouraged us to study the 1973; Andreu & Muiioz, 1975). denaturation by these compounds. In the present The preparation thus obtained was the so-called work we compare the fluorescence and c.d. of the form A of the enzyme. Three additional pure pre- enzyme preparations mentioned above and their parations were obtained from a closely related sub- denaturation by guanidinium chloride and urea. We strain of this micro-organism (forms B; Carreira et show that for all the forms of the enzyme the effect of al., 1976a,b). They differed from form A and from the denaturants takes place in three steps, two of each other in specific activity, stimulation by trypsin which are reversible by dilution. and subunit apparent molecular weight and/or A preliminary account ofpart ofthis work has been composition (Carreira et al., 1976a,b). presented (Nieto & Andreu, 1975). In a previous paper we examined the possibility of achieving reversible denaturation of the ATPase Materials and Methods (preparation A) by variations in the pH (Nieto et al., Chemicals Guanidinium chloride and urea were Ultrapure * Abbreviations: ATPase, adenosine triphosphatase; from Schwarz/Mann (Orangeburg, NY, U.S.A.); c.d., circular dichroism. ATP (disodium salt) was from P-L Biochemicals Vol. 161 L 322 M. NIETO AND J. A. AYALA (Milwaukee, WI, U.S.A.). All other chemicals were below 0.05. Double-glass-distilled water was used in of the best quality commercially available. the preparation of solutions and these, except for the protein, were identical in both the sample and Enzyme preparations reference cuvettes. ATPase preparations A, BAT, BA and B, were Measurements of pH (Radiometer pH M26) and purified as described by Andreu & Munoz (1975) and analytical centrifugation (Spinco model E) by the Carreira et al. (1976a,b). They had the subunit com- high-speed method (Yphantis, 1964) were performed position described by the above authors, and their as described by Nieto et al. (1975). specific acti'vities in pmol/min per mg' of enzyme, measured by the pH-stat method (Nieto et al., 1975), Polyacrylamide-gel electrophoresis were the following: preparation A, 25; preparation Gels (5% acrylamide; 0.6cmxlOcm) were pre- B, (strain PNB, inactive), 2.4; preparation BAT pared and electrophoresis was carried out at pH8.6 (strain PNB, active and stimulated by trypsin), basal in the presence of urea as described by Andreu & activity, 7, stimulated by trypsin (Carreira et al., Munioz (1975). However, in our case the concentra- 1976b) to 14; preparation BA (strain PNB, active, not tion ofurea used in the polymerization ofthe gels and stimulated by trypsin), 23. The assay conditions are the upper buffer chamber was variable from 0 to 8 M. described below. Electrophoresisin sodium dodecylsulphate, pH8.6, was carried out as described by Andreu et al. (1973). Enzyme assay ATPase activity was measured by the pH-stat Denaturation by guanidinium chloride or urea method (Nieto et al., 1975) or colorimetrically To estimate the equilibrium fraction of protein (Vambutas & Racker, 1965; Andreu et al., 1973). remaining native after exposure to a given concentra- Incubations were performed in 30mM-Tris/HCI tion of denaturant, separate solutions (0.5- buffer, pH7.5, at 37°C and had a final ATP/CaCI2 2.5nml) of ATPase in 30mM-Tris/HCI buffer, pH7.5, concentration of 8 mm. The reactions were started by containing guanidinium chloride or urea were adding enzyme (15 or 35pg, depending on the activity maintained at 25°C for 3-5h, and then one or two of of the preparation). The concentration of ATPase the following properties measured: enzymic activity, solutions was estimated by using the value of A m- circular dichroism or fluorescence. The minimal time 6.9 at 276nm as previously determined (Nieto et al., to reach equilibrium had been determined in previous 1975; Carreira et al., 1976a). experiments by recording continuously the time- dependence of the circular dichroism or fluorescence Physical measurements emission at several concentrations ofdenaturant. The U.v. absorption (Cary 16S spectrophotometer) conoentrations of enzyme used in these experiments and circular dichroism (Roussel-Jouan 185 Dicro- were in the range 0.03-0.08mg/mI. In other experi- graph II) were measured at 25 ± 0.1°C and pH7.5 as ments, where reversal of denaturation was tested, the described previously (Nieto etaL, 1975). The values of enzyme concentrations in the solution of denaturant dichroic absorption in a light-path of 1 cm, &A, were were in the range 0.2-0.5mg/ml. After these solutions converted into mean residue molar ellipticity, [0], by had been left at 25°C for 3.5h, they were diluted 5- or means of the relationship, [0]= 3298 AA/c degree 10-fold with 30mM-Tris/HCI buffer, pH7.5, and their cm2 dmol-', where c was the mean residue con- activity, circular dichroism or emission spectra were centration in mol/litre. A value of 109 was used for measured. The concentration of urea and guani- the mean residue weight (Nieto et al., 1975). dinium chloride was estimated from measurements of Fluorescence was measured at 900 to the exciting the refractive index of the solutions (Fasman, 1963; beam (275 nm) with a FICA 55 MK II difference Nozaki, 1972). Two measurements of refractive spectrofluorimeter (Le Mesnil, St.-Denis, France). index were performed, one immediately after setting This apparatus recorded excitation and emission up the denaturation mixture and another after it had spectra, corrected for lamp quantum output and been left for 3-5h at 25°C. Both agreed within 2-3 % detector response respectively. Settings were as in the experiments reported. follows: excitation and emission bandwidths, 7.5nm; measure gain 10; reference voltage, 540V; time- Results constant, 3s; scan speed, lOnm/min. The Rhodamine B cuvette was maintained at 32±0.1°C and the Subunit composition ofthe ATPase preparations sample and reference cuvettes at 25+ 0.1°C by means A brief description of the subunit composition of of jacketed cell-holders through which water was the four ATPase preparations used here should circulated from two independent constant-tempera- facilitate the description of the results and their ture baths (Lauda K2R, Lauda, West Germany). subsequent discussion. Subunits are all designated by Cuvettes with light-paths of 2, 5 and 10mm were Greek letters; subunit a corresponds to subunit x of used as required to keep the absorption ofthe samples Carreira et al. (1976a,b). Preparation A was a3fl3y(p 1977 BACTSIF JAL ATP-ASE DENATURATION 323 (Andreu et al., 1973; Andreu & Munioz, 1975). 7 Preparations B1 and BA were (f'+ C)3335acp; -6 preparation BAT was (a'+ ao)3%i5erEp (Carreira et al., 1976a,b). Preparations of B-type contained two kinds I*e 5. of subunit a, which differed in apparent molecular i.m weight in dodecyl sulphate/polyacrylamide-gel elec- - 4 trophoresis. The difference between forms B1 and BA J3 resided in the relative proportion of these a chains. Preparation BAT was identical with form BA, except 8 that it contained an additional subunit, e, character- I ized as the intrinsic ATPase inhibitor.
Recommended publications
  • DTT (Dithiothreitol)
    FT-054721(284251) DTT (DithioThreitol) Product Information Catalog #: 054721, 5g 054722, 25g Name: DTT (DithioThreitol), Biotech grade CAS: 3483-12-3 Molecular Weight : MW: 154.25 Typical values: Purity: >99.4% Abs@283nm (0.1M, water):<0.05 Loss on drying: <0.5% other names: mp: 39-43°C (2S,3S)-1,4-Bis-sulfanylbutane-2,3-diol Oxidized DTT: <0.5% Threo-1,4-dimercaptobutane-2,3-diol Protease: none DL-Threo-1,4-dimercapto-2,3-butanediol DNase: none 1,4-Dithio-DL-threitol, ±-Threo-1,4-dimercapto- RNase: none 2,3-butanediol Storage: -20°C (or 4°C short term). (M) Cleland's reagent, Reductacryl Protect from moisture. Keep dry Harmful / Irritant; R: 36/37/38; S: 26-36 Cleland’s Reagent, or Dithiothreitol (DTT), is a water-soluble reducing reagent used for various applications in biotechnology, biology and biochemistry : - reduces quantitatively disulfides, generating sulfhydryls (used typically at 1-10mM for protein SS reduction) - reduction of proteins before SDS-PAGE analysis, studies of protein structure and function (Kaji 1993) - keep sulfhydryl groups of biomolecules in the reduced state - protects biomolecules in various applications (enzymes or receptors, living cells under ionizing radiations) - prevents the fading of fluorescence such as FITC labeled conjugates (Picciolo 1984) Technical and Scientific Information Dithiothreitol (DTT), also known as Cleland's reagent, is a small-molecule redox reagent . Its oxidized form is a disulfide-bonded 6-membered ring. DTT has an epimeric ('sister') compound, dithioerythritol (DTE, #123378). DTT is highly soluble in water (clear solution, OD<0.05 at 0.02M), but also in ethanol, chloroform, ether and ethyl acetate.
    [Show full text]
  • Irect Measurement of the Equilibrium Between Glutathione and Dithiothreitol by High Performant;E Liquid Chromatography
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Volume 291. number 2. 296-298 FEES 10260 October 199 I 0 1991 Federation of European Biochemical Societies 00145793/911$3 50 ADONIS 0014579391009708 irect measurement of the equilibrium between glutathione and dithiothreitol by high performant;e liquid chromatography Mei-Hmg Chau and Jeffrey W. Nelson Deprtnlent of Btochemrsrry, Loutsrana Stare Unwersr~y, &ton. Rouge, LA 90803-1806, USA Received 17 Yuly 1991 The equthbrmm constant between reduced glutathlone (GSH), oxldlzed glutathlone (GSSG), reduced chthlothreltol (DTT:!), and oxidized dlthrothreltol (DTT~) has been directly measured by Hugh performance hqutd chromatography analysis of cqulhbrmm mixtures The equihbnum constdnt at 2YC for the reactlon GSSG + DTT:! + 2GSH -t De vanes from approximately 200 M, below pH 8, to approxnnately 2800 M. above pH 11 The observed pH dependence IS generally consistent with pubhshed values of acid dlssoclatIon constants of these thlols Glutathlonc. Dlthlothrenol, Thiol reagent, Dlsulfide exchange 1. INTRODUCTION We are currently carrymg out equihbnum studies of dlsulfide exchange of a protem usmg both dlthiothreitol Dlthiothreltol and glutathione are common reagents and glutathlone Surprismgly, the equihbrmm constant for ths study of disulfide exchange reactions of protein between dlthlothreltol and glutathlone obtamed mdl- &sulfides [l-9] The stabtlity of a dlsulfide bond m a rectly m our studies, approximately 120 M at pH 7 0 protein can be represented by the equihbrium constant (unpubhshed data), was found to be different from pre- of the thlol-dlsulfide exchange between that protem dl- vlously reported values.
    [Show full text]
  • Essential Role of Coenzyme a in Pyruvate Dehydrogenase Kinase Activity
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Volume 148, number 2 FEBSLETTERS November1982 Essential role of coenzyme A in pyruvate dehydrogenase kinase activity E.A. Siess and O.H. Wieland Forschergruppe Diabetes and Institut fiir Klinische Chemie, Sttidtisches Krankenhaus Miinchen-Schwabing, Kd;lner Platz 1, D-8000 Miinchen 40, FRG Received 16 September 1982 The rate of phosphorylation and concomitant inactivation of purified pig heart muscle pyruvate de- hydrogenase complex by intrinsic kinase (EC 2.7.1.99) is markedly accelerated by the addition of co- enzyme A to the incubation medium, showing a half-maximum effect at 1.8 PM. The pantetheine moiety is the effective part of the coenzyme A molecule. The free thiol group is prerequisite for the stimulatory action, acetyl-CoA, benzoyl-CoA or CoAS-SCoA being ineffectual. The thiol’s specificity is evidenced by showing that dithiothreitol, 2-mercaptoethanol or glutathione up to 5 mM failed to replace coenzyme A. The possibility is considered that coenzyme A might act as a physiological modifier of pyruvate dehydrogenase kinase activity. Pyruvate dehydrogenase kinase Phosphorylation Coenzyme A Heart muscle 1. INTRODUCTION together with 50 ~1 0.1 M Na2CO3, 200 ~1 30 mM Tris-HCl buffer (pH 8.6) and 20 ~132 PM CuSO4 Recent work on highly purified pyruvate de- at 25°C. After 2 h, >90% of the initially titratable hydrogenase complex (PDH) from bovine kidney thiol content [4] had disappeared. [Y-~~P]ATP was suggests that protein thiol-disulfide exchange purchased from the Radiochemical Centre is involved in the regulation of PDH kinase (Amersham).
    [Show full text]
  • 1 Abietic Acid R Abrasive Silica for Polishing DR Acenaphthene M (LC
    1 abietic acid R abrasive silica for polishing DR acenaphthene M (LC) acenaphthene quinone R acenaphthylene R acetal (see 1,1-diethoxyethane) acetaldehyde M (FC) acetaldehyde-d (CH3CDO) R acetaldehyde dimethyl acetal CH acetaldoxime R acetamide M (LC) acetamidinium chloride R acetamidoacrylic acid 2- NB acetamidobenzaldehyde p- R acetamidobenzenesulfonyl chloride 4- R acetamidodeoxythioglucopyranose triacetate 2- -2- -1- -β-D- 3,4,6- AB acetamidomethylthiazole 2- -4- PB acetanilide M (LC) acetazolamide R acetdimethylamide see dimethylacetamide, N,N- acethydrazide R acetic acid M (solv) acetic anhydride M (FC) acetmethylamide see methylacetamide, N- acetoacetamide R acetoacetanilide R acetoacetic acid, lithium salt R acetobromoglucose -α-D- NB acetohydroxamic acid R acetoin R acetol (hydroxyacetone) R acetonaphthalide (α)R acetone M (solv) acetone ,A.R. M (solv) acetone-d6 RM acetone cyanohydrin R acetonedicarboxylic acid ,dimethyl ester R acetonedicarboxylic acid -1,3- R acetone dimethyl acetal see dimethoxypropane 2,2- acetonitrile M (solv) acetonitrile-d3 RM acetonylacetone see hexanedione 2,5- acetonylbenzylhydroxycoumarin (3-(α- -4- R acetophenone M (LC) acetophenone oxime R acetophenone trimethylsilyl enol ether see phenyltrimethylsilyl... acetoxyacetone (oxopropyl acetate 2-) R acetoxybenzoic acid 4- DS acetoxynaphthoic acid 6- -2- R 2 acetylacetaldehyde dimethylacetal R acetylacetone (pentanedione -2,4-) M (C) acetylbenzonitrile p- R acetylbiphenyl 4- see phenylacetophenone, p- acetyl bromide M (FC) acetylbromothiophene 2- -5-
    [Show full text]
  • DL-Dithiothreitol Solution (646563)
    DL-Dithiothreitol Solution 1 M in H2O Catalog Number 646563 Store at Room Temperature CAS RN 3483-12-3 Precautions and Disclaimer Synonyms: Cleland's Reagent, DTT For R&D use only. Not for drug, household, or other Molecular Formula: C4H10O2S2 uses. Please consult the Safety Data Sheet for Molecular Weight: 154.3 information regarding hazards and safe handling practices. Product Description Dithiothreitol (DTT) is used in proteomics applications Preparation Instructions to maintain sulfhydryl (–SH) groups in the reduced state This product is supplied as a ready-to-use 1 M solution. and for quantitative reduction of disulfide (–S–S–) groups, as described by Cleland in his pioneering work Storage/Stability in the 1960's.1 By reducing the disulfide bonds in a The unopened product is stable for at least two years at protein sample, the protein can be more effectively room temperature. fragmented and analyzed. Procedure DTT is a commonly used reagent in buffers because of SDS-PAGE sample preparation with DTT its ability to reduce the oxidation state of a protein 1. Dilute the 1 M DTT Solution to 50 mM by adding sample, and thereby, preserve enzymatic activity.2 50 L of the 1 M DTT Solution to 950 L of DTT is oxidized to the cyclic disulfide during the ultrapure water. reduction of other disulfides in solution. Disulfide 2. Aliquots of the 50 mM can be added to the samples reduction is typically complete in minutes at pH 8. Its to a final concentration of 5 mM. usefulness stems from its water solubility, reduced 3.
    [Show full text]
  • Electrophoretic Resolution of Three Major Insulin Receptor Structures
    Proc. Natl. Acad. Sci. USA Vol. 77, No. 12, pp. 7137-7141, December 1980 Biochemistry Electrophoretic resolution of three major insulin receptor structures with unique subunit stoichiometries (crosslinking/plasma membranes/receptor heterogeneity/disulfide-linked subunits/insulin action) JOAN MASSAGUE, PAUL F. PILCH, AND MICHAEL P. CZECH Section of Physiological Chemistry, Division of Biology and Medicine, Brown University, Providence, Rhode Island 02912 Communicated by Herman M. Kalckar, August 29, 1980 ABSTRACT Plasma membrane insulin receptors, affinity erogeneous population of three major insulin receptor structures labeled by covalent crosslinking to receptor-bound "25I-labeled in membranes from all rat and human tissues studied. The insulin, are shown to appear as a heterogeneous population of resolution of these heterogeneous insulin receptor structures three major disulfide-Iinked complexes (Mr 350,000, 320,000, and 290,000) upon electrophoresis in highly porous dodecyl clarifies the apparent diversity of results obtained in different sulfate/polyacrylamide gels in the absence of reductant. This laboratories concerning subunit components of the receptor. pattern is consistent in all rat and human tissues that were an- Our results reveal that the three receptor structures resolved alyzed. Upon reduction of disulfide bonds, each of these re- consist of the Mr 125,000-135,000, Mr 90,000, and Mr ceptor structures is dissociated in two successive steps. Low 45,000-49,000 subunits, identified in various laboratories (1-9), concentrations of dithiothreitol promote a first step of disulfide in unique stoichiometries. bond reduction in which the Mr 350,000 species splits into a Mr 210,000 form and the Mr 290,000 species splits into a Mr 160,000 form.
    [Show full text]
  • 2-Mercaptoethanol
    2-Mercaptoethanol From Wikipedia, the free encyclopedia 2-Mercaptoethanol IUPAC name[hide] 2-Sulfanylethan-1-ol[citation needed] Other names[hide] 2-Hydroxy-1-ethanethiol[citation needed] β-Mercaptoethanol[citation needed] Thioglycol[citation needed] Identifiers CAS number 60-24-2 PubChem 1567 ChemSpider 1512 EC number 200-464-6 UN number 2966 DrugBank DB03345 KEGG C00928 MeSH Mercaptoethanol ChEBI CHEBI:41218 ChEMBL CHEMBL254951 RTECS number KL5600000 Beilstein Reference 773648 Gmelin Reference 1368 3DMet B00201 Jmol-3D images Image 1 SMILES [show] InChI [show] Properties Molecular formula C 2H 6SO −1 Molar mass 78.133 g mol −3 Density 1.114 g cm Melting point −100 °C, 173 K, -148 °F Boiling point 157 °C, 430 K, 314 °F log P -0.23 Vapor pressure 100 Pa (at 20 °C) Acidity (pKa) 9.643 Basicity (pKb) 4.354 Refractive index(nD) 1.4996 Hazards MSDS msds.chem.ox.ac.uk GHS pictograms GHS signal word DANGER GHS hazard statements H301, H310, H315, H317,H318, H330, H410 GHS precautionary P260, P273, P280, P284,P301+310, P302+350 statements EU classification T N R-phrases R20/22, R24, R34, R51/53 S-phrases S26, S36/37/39, S45, S61 Flash point 68 °C Explosive limits 18% Related compounds Related compounds Ethylene glycol 1,2-Ethanedithiol (verify) (what is: / ?) Except where noted otherwise, data are given for materials in their standard state (at 25 °C, 100 kPa) Infobox references 2-Mercaptoethanol (also β-mercaptoethanol, BME, 2BME, 2-ME or β-met) is the chemical compound with the formula HOCH2CH2SH. ME or βME, as it is commonly abbreviated, is used to reduce disulfide bonds and can act as a biological antioxidant by scavenging hydroxyl radicals (amongst others).
    [Show full text]
  • Destruction Or Potentiation of Different Prions Catalyzed by Similar Hsp104 Remodeling Activities
    Molecular Cell 23, 425–438, August 4, 2006 ª2006 Elsevier Inc. DOI 10.1016/j.molcel.2006.05.042 Destruction or Potentiation of Different Prions Catalyzed by Similar Hsp104 Remodeling Activities James Shorter1 and Susan Lindquist1,* transitions of prions and amyloids are profoundly 1 Whitehead Institute for Biomedical Research modulated by molecular chaperones and protein- 9 Cambridge Center remodeling factors (Tuite and Cox, 2003; Muchowski Cambridge, Massachusetts 02142 and Wacker, 2005). However, despite intense scrutiny from many cutting-edge laboratories worldwide, there is still not yet a single example in which the mechanistic Summary interplay between chaperones/protein-remodeling fac- tors and amyloid/prion biochemistry and biology is Yeast prions are protein-based genetic elements that well understood. Here, we address these questions for self-perpetuate changes in protein conformation and two prions of Saccharomyces cerevisiae: [PSI+], whose function. A protein-remodeling factor, Hsp104, con- protein determinant is Sup35, and [URE3], whose pro- trols the inheritance of several yeast prions, including tein determinant is Ure2. Following standard nomencla- those formed by Sup35 and Ure2. Perplexingly, dele- ture, italicized capital letters denote dominant genetic tion of Hsp104 eliminates Sup35 and Ure2 prions, elements, and brackets indicate a non-Mendelian mode whereas overexpression of Hsp104 purges cells of of inheritance. Both properties stem from the ability of Sup35 prions, but not Ure2 prions. Here, we used prions to store and transmit biological information via pure components to dissect how Hsp104 regulates alternative, self-perpetuating structures and functions. prion formation, growth, and division. For both The genetic trait conferred by [PSI+] is due to the con- Sup35 and Ure2, Hsp104 catalyzes de novo prion nu- version of a translation termination factor, Sup35, to cleation from soluble, native protein.
    [Show full text]
  • Electrophoretic Separation in Sodium Dodecyl Sulfate (Electric Eel/Synapse/Membrane Proteins/Molecular Weight)
    Proc. Nat. Acad. Sci. USA Vol. 69, No. 5, pp. 1168-1172, May 1972 Affinity Labeling of the Acetylcholine Receptor in the Electroplax: Electrophoretic Separation in Sodium Dodecyl Sulfate (electric eel/synapse/membrane proteins/molecular weight) MICHAEL J. REITER, DAVID A. COWBURN, JOAV M. PRIVES, AND ARTHUR KARLIN* Department of Neurology, College of Physicians and Surgeons, Columbia University, New York, N.Y. 10032 Communicated by S. J. Singer, February 28, 1972 ABSTRACT Electroplax, single cells dissected from ble ligand of the receptor (3-5). These decrements in the electric tissue of Electrophorus, are labeled in a two-step extent of the labeling reaction approach asymptotic limits procedure: reduction by dithiothreitol followed by alkyla- tion by the affinity label 4-(N-maleimido)-a-benzyltri- with increasing concentrations of [BH]MBTA, and the quan- [methyl-3H]methylammonium iodide, either alone or in tity of receptor in the electroplax has been estimated from combination with [2,3-14C]N-ethylmaleimide. Electro- these limits (4, 5). Comparison of the extent of labeling of phoresis in sodium dodecyl sulfate on polyacrylamide gel of the protectible SH-groups (presumably receptor) and of non- an extract, prepared with this detergent, of single-labeled or of double-labeled cells results in a major peak of 3H protectible SH-groups corroborates the inferred 1000-fold activity, with a mobility corresponding to a polypeptide greater rate of reaction of MBTA with receptor SH-groups; of molecular weight 42,000. In addition, in the double- the 10-20% overall specificity of the labeling results from labeled samples, there is a unique peak in the ratio of 'IH the about 104-fold greater quantity of available nonreceptor to 14C that is coincident with the 3H peak.
    [Show full text]
  • B06 Rev1 2014 06 Sign-Off
    PHARMACOPOEIAL DISCUSSION GROUP B-06 Polyacrylamide Gel Electrophoresis, Revision 1 It is understood that sign-off covers the technical content of the draft and each party will adapt it as necessary to coriform to the usual presentation of the pharmacopoeia in question; such adaptationincludes stipulation of the particular pharmacopoeia's reference materials and general chapters. European Pharmacopoeia Signature Name Date Japanese Pharmacopoeia Signature Name Date United States Pharmacopeia Signature Name Date Stage SB June 2014 CP:EP 40 Denaturing polyacrylamide gel electrophoresis using glycine SDS (SOS-PAGE) is the most 41 common mode of electrophoresis used in assessing the pharmaceutical quality of protein 42 products and will be the focus of the example method. Typically, analytical electrophoresis of 43 proteins is carried out in polyacrylamide gels under conditions that ensure dissociation of the 44 proteins into their individual polypeptide subunits and that minimise aggregation. Most 45 commonly, the strongly anionic detergent SOS is used in combination with heat to dissociate 46 the proteins before they are loaded on the gel. The denatured polypeptides bind to SDS, 47 become negatively charged and exhibit a consistent charge-to-mass ratio regardless of protein 48 type. Because the amount of SDS bound is almost always proportional to the molecular mass 49 of the polypeptide and is independent of its sequence, SDS-polypeptide complexes migrate SO through polyacrylamide gels with mobilities dependent on the size of the po.lypeptide. 51 The electrophoretic mobilities of the resultant detergent-polypeptide complexes all assume the 52 same functional relationship to their molecular masses. SDS complexes will migrate toward 53 the anode in a predictable manner, with low molecular mass complexes migrating faster than 54 larger ones.
    [Show full text]
  • Dithiothreitol, a New Protective Reagent for SH Groups* W
    480 w. w. CLELAND Biochemistry Moore, T. B., and Baker, C. G. (1958), J. Chromatog. I, Spackman, D. H. (1960), Instruction Manual and Hand- 513. book, Beckman/Spinco Model 120 Amino Acid Analyzer, Morrison, N. E. (1962), Bacteriol. Proc. 86. Palo Alto, California, Beckman Instruments Inc., Neilands, J. B. (1956), Arch. Biochem. Biophys. 62, 151. Spinco Division. Neuhaus, F. C. (1962a), J. Biol. Chem. 237, 778. Stammer, C. H. (1962), J. Org. Chem. 27, 2957. Neuhaus, F. C. (1962b), J. Biol. Chem. 237, 3128. Strominger, J. L. (1961), Antimicrobial Agents Ann. 1960, Neuhaus, F. C., and Lynch, J. L. (1962), Biwhem. Biophys. 328. Res. Commun. 8, 377. Strominger, J. L. (1962a), Federation Proc. 21, 134. Neuhaus, F. C., and Lynch, J. L. (1963), Federation Proc. Strominger, J. L. (1962b), Bacteria 3, 413. Abstracts 22,423. Strominger, J. L., Ito, E., Threnn, R. H. (1960), J. Am. Chem. SOC. 82, 998. Park, J. T. (1958), Symp. Soc. Gen. Microbwl. 8, 49. Strominger, J. L., Threnn, R. H., and Scott, S. S. (1959), Plattner, P1. A., Boller, A., Frick, H., Fiirst, A., Hegediis, J. Am. Chem. Soc. 81, 3803. B., Kirchensteiner, H., St. Majnoni, Schlapfer, R., and Vyshepan, E. D., Ivanova, K. I., and Chernukh, A. M. Spiegelberg, H. (1957), Helu. Chim. Acta 40, 1531. (1961), Byul. Eksperim. Biol. i Med. 52, 76. Polyanovskii, 0. L., and Torchinskii, Y. M. (1961), Dokl. Webb, J. L. (1963a), Enzyme and Metabolic Inhibitors, Akad. Nauk. SSSR 141, 488. Vol. I, New York, Academic, p. 104. Shockman, G. D. (1959), Proc. Sw. Exptl. Biol. Med. 101, Webb, J.
    [Show full text]
  • Kinetic Evidence for a Two-Stage Mechanism of Protein Denaturation by Guanidinium Chloride
    Kinetic evidence for a two-stage mechanism of protein denaturation by guanidinium chloride Santosh Kumar Jhaa,1 and Susan Marquseea,b,2 aCalifornia Institute for Quantitative Biosciences and bDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3220 Edited by Robert L. Baldwin, Stanford University, Stanford, CA, and approved February 14, 2014 (received for review August 14, 2013) Dry molten globular (DMG) intermediates, an expanded form of hydrophobic core, resulting in global structural disruption. Ex- the native protein with a dry core, have been observed during perimental support for this model has, however, been scarce and denaturant-induced unfolding of many proteins. These observa- indirect (4, 6, 13, 26). tions are counterintuitive because traditional models of chemical Here, we demonstrate that the well-studied protein Escherichia denaturation rely on changes in solvent-accessible surface area, coli ribonuclease HI (RNase H) (28–30) also rapidly populates and there is no notable change in solvent-accessible surface area a DMG state when exposed to denaturant and use this observation during the formation of the DMG. Here we show, using multisite to explore the denaturant dependence of the DMG. We use fluorescence resonance energy transfer, far-UV CD, and kinetic multisite fluorescence resonance energy transfer (FRET) and thiol-labeling experiments, that the guanidinium chloride (GdmCl)- kinetic thiol-labeling measurements to dissect the temporal or- induced unfolding of RNase H also begins with the formation of der of protein expansion, side-chain disruption, and water sol- the DMG. Population of the DMG occurs within the 5-ms dead time vation during GdmCl-induced unfolding.
    [Show full text]