Microbial Ecology of Biological Invasions
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Twin Cities Chapter Quarterly Newsletter
Twin Cities Chapter Quarterly Newsletter November 2017 Volume 15, Issue 4 Upcoming Events/Monthly Meetings SAVE THE DATE!! Saturday, February 17, 2018 DESIGN WITH NATURE CONFERENCE We Are Wildlife Edible and Medicinal Native Plants in Restoration Practice Featured Speakers: Jared Rosenbaum & Rachel Machow, Wild Ridge Plants, growers and stewards of native plants. Catherine Zimmerman, The Meadow Project and Director of Urban and Suburban Meadows Native Plant/Natural Landscape Exhibitors—Experts to help match your ideas with the land! Where: Anderson Student Center, University of St. Thomas, St. Paul Campus. More details will be found in our February Newsletter or at designwithnatureconference.org Conference Keynote Speaker: Jared Rosenbaum explores the greater role native plants may play in home landscapes, farms and food gardens. How might we change our foodways, growing and eating habits, to favor the diversity of edible and medicinal native plants needed for natural land restoration and stewardship? What are the native plant design and management considerations between different Jared Rosenbaum habitats such as mesic forest, ridge lines and riparian corridors? 1 Jared is a field botanist, co-owner of native plant nursery Wild Ridge Plants, and ecological restoration practitioner, dedicated to finding ways we can create sustainable habitat that supports humans, other animals, and native plants alike. He is a founding partner at Wild Ridge Plants LLC, a business that grows local ecotype native plants using sustainable practices, performs botanical surveys, and provides ecological restoration planning services. Jared has extensive experience in stewardship and monitoring of natural communities. He is known as an educator in plant ecology, ecological restoration, and the cultural uses of wild plant foods and medicines. -
Diversity and Evolution of Bacterial Bioluminescence Genes in the Global Ocean Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, Y
Diversity and evolution of bacterial bioluminescence genes in the global ocean Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, Y. Timsit To cite this version: Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, et al.. Diversity and evolution of bacterial bioluminescence genes in the global ocean. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (2), 10.1093/nargab/lqaa018. hal-02514159 HAL Id: hal-02514159 https://hal.archives-ouvertes.fr/hal-02514159 Submitted on 21 Mar 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Published online 14 March 2020 NAR Genomics and Bioinformatics, 2020, Vol. 2, No. 2 1 doi: 10.1093/nargab/lqaa018 Diversity and evolution of bacterial bioluminescence genes in the global ocean Thomas Vannier 1,2,*, Pascal Hingamp1,2, Floriane Turrel1, Lisa Tanet1, Magali Lescot 1,2,* and Youri Timsit 1,2,* 1Aix Marseille Univ, Universite´ de Toulon, CNRS, IRD, MIO UM110, 13288 Marseille, France and 2Research / Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022 Tara GOSEE, 3 rue Michel-Ange, Downloaded from https://academic.oup.com/nargab/article-abstract/2/2/lqaa018/5805306 by guest on 21 March 2020 75016 Paris, France Received October 21, 2019; Revised February 14, 2020; Editorial Decision March 02, 2020; Accepted March 06, 2020 ABSTRACT ganisms and is particularly widespread in marine species (7–9). -
Wester Ross Fisheries Trust Biosecurity Plan 2010 – 2015
Wester Ross and Lochalsh Biosecurity Plan 2021-30 Wester Ross Fisheries Trust & Skye and Lochalsh Rivers Trust i Contents Background ............................................................................................................................ 1 1. Introduction .................................................................................................................... 1 2. Context ................................................................................................................................ 3 2.1 Biosecurity: The Nature of the Problem ......................................................................................... 3 2.2 Policy and Legislation ......................................................................................................................... 4 3. Biosecurity: Current and Potential Threats ...................................................................... 5 3.1 Current biosecurity issues ............................................................................................................... 6 3.2 Potential Biosecurity Issues ............................................................................................................. 7 3.3 Fish Health and genetic issues .......................................................................................................... 11 3.4 INNS and Fish Diseases Pathways ..................................................................................................... 11 4. Existing INNS control activities ..................................................................................... -
The Effects of Eutrophication on the Structure and Function of Microbial Biofilms
The Effects of Eutrophication on the Structure and Function of Microbial Biofilms David J. Van Horn1*, Cliff N. Dahm1 1UNM Department of Biology, 167 Castetter Hall MSC03 2020, 1 University of New Mexico, Albuquerque, NM 87131-0001 Abstract: Biofilms are the dominate form of microbial life in aquatic ecosystems and are responsible for performing a wide variety of ecosystem services including nutrient and organic matter processing and retention. Understanding how eutrophication impacts these communities is essential for ecosystem managers as many aquatic ecosystems are being enriched by anthropogenic activities. This study investigated the effects of eutrophication on biofilm productivity, community structure and diversity, and function. Increasing background dissolved organic carbon and nutrient concentrations by a factor of twelve increased biofilm ash free dry mass and the abundance of live cells ~ 22 and 200 fold respectively. Extracellular enzyme activities for five enzymes from the same samples showed a range of increase from ~ 300 times for phosphatase to 8000 times for N-acetylglucosaminidase. Enrichment decreased the bacterial diversity of these biofilms and resulted in a gradual shift in community structure that intensified from low to high enrichment. These data indicate that the productivity, community structure, and function of stream biofilm communities are highly responsive to eutrophication inputs. 1 Introduction: Microbes are the most abundant organisms on Earth and play a central role in all global processes. While often overlooked due to their inconspicuous nature, microbes contain as much carbon and ten times more nitrogen and phosphorus than plants (Whitman et al. 1998), possess unique metabolic pathways essential to biogeochemical cycles (Schlesinger 1997), and represent a potentially massive pool of genetic diversity that is only now being explored (Curtis et al. -
New Zealand Flatworm
www.nonnativespecies.org Produced by Max Wade, Vicky Ames and Kelly McKee of RPS New Zealand Flatworm Species Description Scientific name: Arthurdendyus triangulatus AKA: Artioposthia triangulata Native to: New Zealand Habitat: Gardens, nurseries, garden centres, parks, pasture and on wasteland This flatworm is very distinctive with a dark, purplish-brown upper surface with a narrow, pale buff spotted edge and pale buff underside. Many tiny eyes. Pointed at both ends, and ribbon-flat. A mature flatworm at rest is about 1 cm wide and 6 cm long but when extended can be 20 cm long and proportionally narrower. When resting, it is coiled and covered in mucus. It probably arrived in the UK during the 1960s, with specimen plants sent from New Zealand to a botanic garden. It was only found occasionally for many years, but by the early 1990s there were repeated findings in Scotland, Northern Ireland and northern England. Native to New Zealand, the flatworm is found in shady, wooded areas. Open, sunny pasture land is too hot and dry with temperatures over 20°C quickly lethal to it. New Zealand flatworms prey on earthworms, posing a potential threat to native earthworm populations. Further spread could have an impact on wild- life species dependent on earthworms (e.g. Badgers, Moles) and could have a localised deleterious effect on soil structure. For details of legislation go to www.nonnativespecies.org/legislation. Key ID Features Underside pale buff Ribbon flat Leaves a slime trail Pointed at Numerous both ends tiny eyes 60 - 200 mm long; 10 mm wide Upper surface dark, purplish-brown with a narrow, pale buff edge Completely smooth body surface Forms coils when at rest Identification throughout the year Distribution Egg capsules are laid mainly in spring but can be found all year round. -
Soil Microbial Biomass, Activity and Community Composition Along
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-184 Manuscript under review for journal Biogeosciences Discussion started: 12 June 2017 c Author(s) 2017. CC BY 3.0 License. 1 Soil microbial biomass, activity and community composition along 2 altitudinal gradients in the High Arctic (Billefjorden, Svalbard) 3 Petr Kotas1,2, Hana Šantrůčková1, Josef Elster3,4, Eva Kaštovská1 4 1Department of Ecosystem Biology, Faculty of Science, University of South Bohemia, České Budějovice, 370 05, Czech 5 Republic 6 2Institute of Chemistry and Biochemistry, Faculty of Science, University of South Bohemia, České Budějovice, 370 05, 7 Czech Republic 8 3Centre for Polar Ecology, Faculty of Science, University of South Bohemia, České Budějovice, 370 05, Czech Republic 9 4Centre for Phycology, Institute of Botany, Academy of Sciences of the Czech Republic, Třeboň, 379 82, Czech Republic 10 11 Correspondence to: Petr Kotas ([email protected]) 12 Abstract The unique and fragile High Arctic ecosystems are vulnerable to proceeding global climate warming. Elucidation 13 of factors driving microbial distribution and activity in Arctic soils is essential for comprehensive understanding of the 14 ecosystem functioning and its response to environmental change. The goals of this study were to investigate the microbial 15 biomass, activity, microbial community structure (MCS) and its abiotic controls in soils along three elevational gradients in 16 coastal mountains of Billefjorden, Central Svalbard. Soils from four different altitudes (25, 275, 525, and 765 m above sea 17 level) were analysed for a suite of characteristics including temperature regimes, organic matter content, base cation 18 availability, moisture, pH, basal respiration, and microbial biomass and community structure using phospholipid fatty acids 19 (PLFA). -
FINAL Abstracts Speakers Conference
ABSTRACTS Invasive Alien Species: the Urban Dimension Strengthening local action in Europe’s urban areas 5 September 2013, IUCN Global Headquarters, Gland, Switzerland Abstracts Opening speech Gian-Reto Walther, Scientific officer of the Species, Ecosystems, Landscapes Division Swiss Federal Office for the Environment The national inventory of alien species in Switzerland 1 lists about 800 established alien species and identifies among them 107 invasive alien species. The Swiss Biodiversity Strategy 2 formulates as strategic goal: The spread of invasive alien species with the potential to cause damage is contained. The action plan to the Swiss Biodiversity Strategy is due in early 2014 and will consist of a comprehensive work package to achieve the targets of the strategy. In the national legislation, invasive alien species are treated in several laws, e.g. the federal acts on the protection of nature and cultural heritage, on the protection of the environment, on hunting and the protection of wild mammals and birds, on fisheries, on forest, and on agriculture, with their relevant ordinances. Since 2008, the national Ordinance on the Handling of Organisms in the Environment (Release Ordinance, RO) 3 is in force. It includes alien species in particular and consists of a multi-level approach in dealing the handling of alien species. The precautionary principle is applied as a general requirement for handling organisms. Any person who intends to market organisms for the use in the environment must first assess the hazards and impairments by the organisms and arrive at a justifiable conclusion that none of these are to be expected. As a subsequent step, the ordinance formulates requirements for handling alien organisms, and as a final step, the ordinance lists those invasive alien species that may not be handled directly in the environment, other than in the case of measures to control them. -
Patterns of Microbial Diversity and Community Composition in Slot Canyons, Rock Pools, and Other Ephemeral and Perennial Aquatic Habitats
Utah State University DigitalCommons@USU All Graduate Theses and Dissertations Graduate Studies 5-2020 Patterns of Microbial Diversity and Community Composition in Slot Canyons, Rock Pools, and Other Ephemeral and Perennial Aquatic Habitats Marley Madsen Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/etd Part of the Ecology and Evolutionary Biology Commons Recommended Citation Madsen, Marley, "Patterns of Microbial Diversity and Community Composition in Slot Canyons, Rock Pools, and Other Ephemeral and Perennial Aquatic Habitats" (2020). All Graduate Theses and Dissertations. 7750. https://digitalcommons.usu.edu/etd/7750 This Thesis is brought to you for free and open access by the Graduate Studies at DigitalCommons@USU. It has been accepted for inclusion in All Graduate Theses and Dissertations by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. PATTERNS OF MICROBIAL DIVERSITY AND COMMUNITY COMPOSITION IN SLOT CANYONS, ROCK POOLS, AND OTHER EPHEMERAL AND PERENNIAL AQUATIC HABITATS by Marley Madsen A thesis submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE in Ecology Approved: Bonnie Waring, Ph.D. Paul Wolf, Ph.D. Major Professor Committee Member Will Pearse, Ph.D. Richard S. Inouye, Ph.D. Committee Member Vice Provost for Graduate Studies UTAH STATE UNIVERSITY Logan, Utah 2020 ii Copyright c Marley Madsen 2020 All Rights Reserved iii Abstract Patterns of Microbial Diversity and Community Composition in Slot Canyons, Rock Pools, and Other Ephemeral and Perennial Aquatic Habitats by Marley Madsen, Master of Science Utah State University, 2020 Major Professor: Dr. Bonnie Waring Department: Biology In general, species sorting is the dominant community assembly mechanism for mi- crobes, and this pattern holds true over a diverse range of habitats and spatial scales. -
The Potential Detrimental Impact of the New Zealand Flatworm to Scottish
B. Boag and R. Neilson Boag, B. and R. Neilson. The potential detrimental impact of the New Zealand fl atworm to Scottish islands The potential detrimental impact of the New Zealand fl atworm to Scottish islands B. Boag and R. Neilson The James Hutton Institute, Invergowrie, Dundee, Scotland, DD2 5DA, UK. <[email protected]>. Abstract: The New Zealand fl atworm, Arthurdendyus triangulatus, is an alien invasive species in The British Isles and the Faroes. It was probably fi rst introduced after WWII and is an obligate predator of our native earthworms. It was initially considered a curiosity until observations in the 1990s in Northern Ireland found it could signifi cantly reduce earthworm numbers. In 1992, it was scheduled under the Countryside and Wildlife Act 1981 then transferred to the Wildlife and Natural Environment (Scotland) Act in 2011 which makes it an off ence to knowingly distribute the fl atworm. A retrospective survey in Scotland showed that it was detected in botanic gardens, nurseries and garden centres in the 1960s but then spread to domestic gardens then fi nally to farms in the 1990s. Although the geographical distribution of A. triangulatus was initially confi ned to mainland Scotland it was subsequently found established on 30 Scottish Islands. Most of the islands are to the north and west of Scotland and have cool damp climates which are favoured by the New Zealand fl atworm. These islands also generally have relatively poor soils that support grassland farming systems. Evidence from both Northern Ireland and Scotland suggests anecic species of earthworm which occur predominantly in grassland, which help drainage and are a source of food for both animals and birds are at particular risk from the fl atworm. -
Global Biogeography of Fungal and Bacterial Biomass Carbon in Topsoil
UC Davis UC Davis Previously Published Works Title Global biogeography of fungal and bacterial biomass carbon in topsoil Permalink https://escholarship.org/uc/item/1mm4s4x3 Authors He, L Mazza Rodrigues, JL Soudzilovskaia, NA et al. Publication Date 2020-12-01 DOI 10.1016/j.soilbio.2020.108024 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Soil Biology and Biochemistry 151 (2020) 108024 Contents lists available at ScienceDirect Soil Biology and Biochemistry journal homepage: http://www.elsevier.com/locate/soilbio Global biogeography of fungal and bacterial biomass carbon in topsoil Liyuan He a, Jorge L. Mazza Rodrigues b, Nadejda A. Soudzilovskaia c, Milagros Barcelo´ c, Pål Axel Olsson d, Changchun Song e, Leho Tedersoo f, Fenghui Yuan a,g, Fengming Yuan h, David A. Lipson a, Xiaofeng Xu a,* a Biology Department, San Diego State University, San Diego, CA, 92182, USA b Department of Land, Air and Water Resources, University of California Davis, Davis, CA 95616, USA c Environmental Biology Department; Institute of Environmental Sciences, CML, Leiden University; Einsteinweg 2, 2333 CC Leiden, the Netherlands d Biodiversity, Biology Department, Lund University, SE-223 62 Lund, Sweden e Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, China f Institute of Ecology and Earth Sciences, University of Tartu, 14a Ravila, 50411 Tartu, Estonia g Shenyang Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China h Oak Ridge National Laboratory, Environmental Sciences Division, Oak Ridge, TN, USA ARTICLE INFO ABSTRACT Keywords: Bacteria and fungi, representing two major soil microorganism groups, play an important role in global nutrient Fungi biogeochemistry. -
Aquatic Microbial Ecology 45:55
AQUATIC MICROBIAL ECOLOGY Vol. 45: 55–67, 2006 Published October 25 Aquat Microb Ecol Relationship of bacterial growth efficiency to spatial variation in bacterial activity in the Hudson River Paul A. del Giorgio1,*, M. L. Pace2, D. Fischer2 1Département des sciences biologiques, Université du Québec à Montréal (UQAM), CP 8888, succursale Centre Ville, Montréal (Québec) H3C 3P8, Canada 2Institute of Ecosystem Studies, PO Box AB, Millbrook, New York 12545, USA ABSTRACT: Variation in bacterial production (BP) is used as an indicator of bacterial metabolism and carbon processing in the analysis of aquatic ecosystems. The allocation of carbon by bacteria to either BP or respiration (BR), however, is variable and may potentially influence the assessment of carbon cycling by bacteria in ecosystems. We studied 10 transects in the Hudson River estuary where there is a gradient in BP and BR along the flow path of the estuary. We measured BP and BR in filtered sam- ples to derive an estimate of bacterial growth efficiency (BGE) that we could compare with indepen- dent measurements of total BP (BPT) from unfiltered samples to evaluate the relationship of BGE to BP. We further tested the assumption that BGE derived from filtered samples is a good estimator of the ambient BGE on a subset of transects in the upriver section where bacteria dominate respiration. There was good agreement (near 1:1) between respiration measured in unfiltered samples and total BR estimated from BPT and BGE in the filtered fraction (total BR = [BPT/BGE] – BPT). BGE averaged 0.29 but varied from 0.07 to 0.61, and did not explain the general decline in BPT along the river. -
Microbial Loop Carbon Cycling in Ocean Environments Studied Using a Simple Steady-State Model
AQUATIC MICROBIAL ECOLOGY Vol. 26: 37–49, 2001 Published October 26 Aquat Microb Ecol Microbial loop carbon cycling in ocean environments studied using a simple steady-state model Thomas R. Anderson1,*, Hugh W. Ducklow2 1Southampton Oceanography Centre, Waterfront Campus, European Way, Southampton SO14 3ZH, United Kingdom 2College of William and Mary School of Marine Science, Rte 1208, Box 1346, Gloucester Point, Virginia 23062, USA ABSTRACT: A simple steady-state model is used to examine the microbial loop as a pathway for organic C in marine systems, constrained by observed estimates of bacterial to primary production ratio (BP:PP) and bacterial growth efficiency (BGE). Carbon sources (primary production including extracellular release of dissolved organic carbon, DOC), cycling via zooplankton grazing and viral lysis, and sinks (bacterial and zooplankton respiration) are represented. Model solutions indicate that, at least under near steady-state conditions, recent estimates of BP:PP of about 0.1 to 0.15 are consistent with reasonable scenarios of C cycling (low BGE and phytoplankton extracellular release) at open ocean sites such as the Sargasso Sea and subarctic North Pacific. The finding that bacteria are a major (50%) sink for primary production is shown to be consistent with the best estimates of BGE and dissolved organic matter (DOM) production by zooplankton and phytoplankton. Zooplank- ton-related processes are predicted to provide the greatest supply of DOC for bacterial consumption. The bacterial contribution to C flow in the microbial loop, via bacterivory and viral lysis, is generally low, as a consequence of low BGE. Both BP and BGE are hard to quantify accurately.