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A Taxonomic Note on the Genus Lactobacillus
Taxonomic Description template 1 A taxonomic note on the genus Lactobacillus: 2 Description of 23 novel genera, emended description 3 of the genus Lactobacillus Beijerinck 1901, and union 4 of Lactobacillaceae and Leuconostocaceae 5 Jinshui Zheng1, $, Stijn Wittouck2, $, Elisa Salvetti3, $, Charles M.A.P. Franz4, Hugh M.B. Harris5, Paola 6 Mattarelli6, Paul W. O’Toole5, Bruno Pot7, Peter Vandamme8, Jens Walter9, 10, Koichi Watanabe11, 12, 7 Sander Wuyts2, Giovanna E. Felis3, #*, Michael G. Gänzle9, 13#*, Sarah Lebeer2 # 8 '© [Jinshui Zheng, Stijn Wittouck, Elisa Salvetti, Charles M.A.P. Franz, Hugh M.B. Harris, Paola 9 Mattarelli, Paul W. O’Toole, Bruno Pot, Peter Vandamme, Jens Walter, Koichi Watanabe, Sander 10 Wuyts, Giovanna E. Felis, Michael G. Gänzle, Sarah Lebeer]. 11 The definitive peer reviewed, edited version of this article is published in International Journal of 12 Systematic and Evolutionary Microbiology, https://doi.org/10.1099/ijsem.0.004107 13 1Huazhong Agricultural University, State Key Laboratory of Agricultural Microbiology, Hubei Key 14 Laboratory of Agricultural Bioinformatics, Wuhan, Hubei, P.R. China. 15 2Research Group Environmental Ecology and Applied Microbiology, Department of Bioscience 16 Engineering, University of Antwerp, Antwerp, Belgium 17 3 Dept. of Biotechnology, University of Verona, Verona, Italy 18 4 Max Rubner‐Institut, Department of Microbiology and Biotechnology, Kiel, Germany 19 5 School of Microbiology & APC Microbiome Ireland, University College Cork, Co. Cork, Ireland 20 6 University of Bologna, Dept. of Agricultural and Food Sciences, Bologna, Italy 21 7 Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Vrije Universiteit 22 Brussel, Brussels, Belgium 23 8 Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, 24 Belgium 25 9 Department of Agricultural, Food & Nutritional Science, University of Alberta, Edmonton, Canada 26 10 Department of Biological Sciences, University of Alberta, Edmonton, Canada 27 11 National Taiwan University, Dept. -
A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex
A genome-based species taxonomy of the Lactobacillus genus complex Item Type Article Authors Wittouck, S.; Wuyts, S.; Meehan, Conor J.; van Noort, V.; Lebeer, S. Citation Wittouck S, Wuyts S, Meehan CJ et al (2019) A genome-based species taxonomy of the Lactobacillus genus complex. mSystems. 4(5): e00264-19. Rights © 2019 Wittouck et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. Download date 03/10/2021 20:20:26 Link to Item http://hdl.handle.net/10454/17513 RESEARCH ARTICLE Ecological and Evolutionary Science A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex Stijn Wittouck,a,b Sander Wuyts,a Conor J. Meehan,c,d Vera van Noort,b Sarah Lebeera Downloaded from aResearch Group Environmental Ecology and Applied Microbiology, Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium bCentre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium cSchool of Chemistry and Bioscience, University of Bradford, Bradford, United Kingdom dBCCM/ITM Mycobacterial Culture Collection, Institute of Tropical Medicine, Antwerp, Belgium ABSTRACT There are more than 200 published species within the Lactobacillus ge- nus complex (LGC), the majority of which have sequenced type strain genomes http://msystems.asm.org/ available. Although genome-based species delimitation cutoffs are accepted as the gold standard by the community, these are seldom actually checked for new or al- ready published species. In addition, the availability of genome data is revealing in- consistencies in the species-level classification of many strains. We constructed a de novo species taxonomy for the LGC based on 2,459 publicly available genomes, us- ing a 94% core nucleotide identity cutoff. -
A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex
RESEARCH ARTICLE Ecological and Evolutionary Science Downloaded from A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex Stijn Wittouck,a,b Sander Wuyts,a Conor J. Meehan,c,d Vera van Noort,b Sarah Lebeera aResearch Group Environmental Ecology and Applied Microbiology, Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium bCentre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium http://msystems.asm.org/ cSchool of Chemistry and Bioscience, University of Bradford, Bradford, United Kingdom dBCCM/ITM Mycobacterial Culture Collection, Institute of Tropical Medicine, Antwerp, Belgium ABSTRACT There are more than 200 published species within the Lactobacillus ge- nus complex (LGC), the majority of which have sequenced type strain genomes available. Although genome-based species delimitation cutoffs are accepted as the gold standard by the community, these are seldom actually checked for new or al- ready published species. In addition, the availability of genome data is revealing in- consistencies in the species-level classification of many strains. We constructed a de novo species taxonomy for the LGC based on 2,459 publicly available genomes, us- ing a 94% core nucleotide identity cutoff. We reconciled these de novo species with on January 24, 2020 at University of Antwerp - Library published species and subspecies names by (i) identifying genomes of type strains and (ii) comparing 16S rRNA genes of the genomes with 16S rRNA genes of type strains. We found that genomes within the LGC could be divided into 239 de novo species that were discontinuous and exclusive. Comparison of these de novo species to published species led to the identification of nine sets of published species that can be merged and one species that can be split. -
A Taxonomic Note on the Genus Lactobacillus
TAXONOMIC DESCRIPTION Zheng et al., Int. J. Syst. Evol. Microbiol. DOI 10.1099/ijsem.0.004107 A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae Jinshui Zheng1†, Stijn Wittouck2†, Elisa Salvetti3†, Charles M.A.P. Franz4, Hugh M.B. Harris5, Paola Mattarelli6, Paul W. O’Toole5, Bruno Pot7, Peter Vandamme8, Jens Walter9,10, Koichi Watanabe11,12, Sander Wuyts2, Giovanna E. Felis3,*,†, Michael G. Gänzle9,13,*,† and Sarah Lebeer2† Abstract The genus Lactobacillus comprises 261 species (at March 2020) that are extremely diverse at phenotypic, ecological and gen- otypic levels. This study evaluated the taxonomy of Lactobacillaceae and Leuconostocaceae on the basis of whole genome sequences. Parameters that were evaluated included core genome phylogeny, (conserved) pairwise average amino acid identity, clade- specific signature genes, physiological criteria and the ecology of the organisms. Based on this polyphasic approach, we propose reclassification of the genus Lactobacillus into 25 genera including the emended genus Lactobacillus, which includes host- adapted organisms that have been referred to as the Lactobacillus delbrueckii group, Paralactobacillus and 23 novel genera for which the names Holzapfelia, Amylolactobacillus, Bombilactobacillus, Companilactobacillus, Lapidilactobacillus, Agrilactobacil- lus, Schleiferilactobacillus, Loigolactobacilus, Lacticaseibacillus, Latilactobacillus, Dellaglioa, -
Pgdbst – 05: Bread Industry and Processes
POST GRADUATE DIPLOMA IN BAKERY SCIENCE AND TECHNOLOGY PGDBST – 05 BREAD INDUSTRY AND PROCESSES DIRECTORATE OF DISTANCE EDUCATION GURU JAMBHESHWAR UNIVERSITY OF SCIENCE AND TECHNOLOGY HISAR – 125 001 2 PGDBST- 05 B.S.Khatkar UNIT 1: BREAD MAKING PROCESS STRUCTURE 1.0 OBJECTIVES 1.1 STATUS OF BAKING INDUSTRY 1.2 BREAD FORMULATION 1.3 BREAD MAKING PROCEDURE 1.4 FUNCTIONS OF MIXING 1.5 TYPES OF MIXERS 1.6 FUNCTIONS OF MOULDING AND DIVIDING 1.7 FUNCTIONS OF PROVING 1.8 CHANGES DURING MIXING, FERMENTATION AND BAKING 1.9 SUMMARY 1.10 KEY WORDS 1.11 SELF ASSESSMENT QUESTIONS 1.12 SUGGESTED READINGS 3 1.0 OBJECTIVES Thorough study of this unit will enable the reader to understand: • Status of baking industry • Bread making procedure • Types of mixers • Functions of mixing, moulding, dividing and proving • Changes during mixing, fermentation and baking 1.1 STATUS OF BAKING INDUSTRY India is the 2nd largest wheat producing country in the world next only to China. The present production of wheat in India is about 72 million tonnes indicating 6-fold increase in the three decade due to onset of green revolution. The five major wheat producing states in India are U.P., Punjab, Haryana, Bihar and Himachal Pradesh. Unlike in other economically developed nations, bulk of the wheat produced in our country is processed into whole wheat flour for use in various traditional products. About 10 per cent of the total wheat produced is processed into different products like maida, suji, atta, etc. in roller flour mill, which forms the main raw material for bakery and pasta industry. -
Handbook of Preparation of Milk Bread 2
PM Formalisation of Micro Food Processing Enterprises (PM-FME) Scheme HANDBOOK OF PREPARATION OF MILK BREAD AATMANIRBHAR BHARAT Indian Institute of Food Processing Technology Ministry of Food Processing Industries, Government of India Pudukkottai Road, Thanjavur Tamil Nadu Indian Institute of Food Processing Technology TABLE OF CONTENTS Page No. Chapter 1: Introduction 1.1 Status of Baking Industry 3 1.2 Bakery Industry 3 1.3 Constraints of Bakery Industry 4 1.4 Introduction to Bread Making 4 1.5 Principle of Bread Baking 4 Chapter 2: Preparation of Milk Bread 2.1 Ingredients and their Functions in Bread Making 5 2. Methods of Bread Making 8 2.3 Bread Manufacturing 11 2.4 Bread Making Procedure 13 Chapter 3: Packaging of Milk Bread 3.1 Introduction to Packaging 17 3.2 Packaging Material Used for Bakery Products 17 3.3 Techniques for packaging of bakery products 19 3.4 Shelf Life of Packaged Bakery Goods 20 Chapter 4: Food Safety Regulations & Standards 4.1 Definitions and Standards 23 4.2 Food Safety 26 4.3 Labelling Standards 27 PMFME Handbook of Preparation of Milk Bread 2 Indian Institute of Food Processing Technology CHAPTER 1 INTRODUCTION 1.1 Status of Baking Industry India is the 2nd largest wheat producing country in the world next only to China. The present production of wheat in India is about 72 million tonnes indicating 6-fold increase in the three decade due to onset of green revolution. The five major wheat producing states in India are U.P., Punjab, Haryana, Bihar and Himachal Pradesh. Unlike in other economically developed nations, bulk of the wheat produced in our country is processed into whole wheat flour for use in various traditional products. -
(12) United States Patent (10) Patent No.: US 8,196,417 B2 Kim Et Al
USOO8196417B2 (12) United States Patent (10) Patent No.: US 8,196,417 B2 Kim et al. (45) Date of Patent: Jun. 12, 2012 (54) REFRIGERATOR (52) U.S. Cl. .............................................. 62/78; 62/515 (58) Field of Classification Search ................ 62/26,78, (75) Inventors: Dong-Kyu Kim, Pohang-si (KR): 62/449, 515; 426/43, 38, 57, 61,234, 305; Kyung-Dae Hwang, Changwon-si (KR): 38/26, 78,449, 515 Jin-Hyun Kim, Incheon-si (KR); See application file for complete search history. Hyuk-Soon Kim, Seoul (KR): Seung-Beom Chae, Gangneung-si (KR); (56) References Cited Hyun-Tae Lee, Changwon-si (KR): Joo-Shin Kim, Changwon-si (KR) U.S. PATENT DOCUMENTS 2,765,046 A 10, 1956 Rondholz (73) Assignee: LG Electronics Inc., Seoul (KR) 4.942,032 A 7/1990 Vandenbergh et al. 5, 186,962 A 2f1993 Hutkins et al. (*) Notice: Subject to any disclaimer, the term of this 5,392,615 A * 2/1995 Lim ................................ 62/414 patent is extended or adjusted under 35 U.S.C. 154(b) by 881 days. (Continued) FOREIGN PATENT DOCUMENTS (21) Appl. No.: 12/094,760 DE 202 14 601 U1 1, 2003 (22) PCT Filed: Nov. 23, 2006 (Continued) (86). PCT No.: OTHER PUBLICATIONS S371 (c)(1), Translation of JP 10-132447 to Sumidaetal of an Ids enclosed by the (2), (4) Date: Oct. 14, 2008 Applicants. (87) PCT Pub. No.: WO2007/061238 Primary Examiner — Mohammad Ali (74) Attorney, Agent, or Firm — Birch, Stewart, Kolasch & PCT Pub. Date: May 31, 2007 Birch, LLP (65) Prior Publication Data (57) ABSTRACT US 2009/0217694 A1 Sep. -
(EX) Sheeting Line
Rise Together. Tromp Extrusion (EX) Sheeting Line Offering maximum product flexibility with unmatched accuracy across a wide range of pizzas, flatbreads, pita, naan, and more. Suitable for green doughs and straight doughs up to 55% water absorption. AMFBAKERY.COM | [email protected] 2 DESIGN INNOVATIONS AMF’s stress-free Tromp Sheeting Lines are designed to support the natural processes that are key in top quality bread production. Designed for midsize to large industrial bakeries, the flexible AMF Tromp Extrusion Sheeting Lines offer 55% water absorption by means of a 3-roll dough extruder to produce a finer dough structure for green or straight doughs. Capacities range from 3,000 kilo/hour (6614 lbs) to 6,000 kilo/hour (13228 lbs). for consistent, reliable production. FLEXIBILITY Offering up to 55% water content for green or straight dough production, the AMF Tromp EX Sheeting Line creates a finer dough structure than other sheeting methods. ACCURACY AMF Tromp lines ensure accurate dough sheet thickness with repeatable performance and controlled baking parameters through recipe-driven control systems. AMF Sheeted Pizza/Flatbread System RELIABILITY Best-in-class engineering solutions designed with our master baker mindset guarantees simple, low maintenance operation with unparalleled service and support for the life of your bakery. SANITATION Open frame, hygienic wash-down design and toolless parts removal allows for easy sanitation and maintenance. Tromp EX Sheeting Line From Mixer To Marketplace AMF TROMP EX SHEETING LINE 3 SHEETING PROCESS Multiroller reduction station gently reduces the raw dough sheet without damaging dough structure to the required thickness, adjustable between 1-30 mm. -
A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex
bioRxiv preprint doi: https://doi.org/10.1101/537084; this version posted January 31, 2019. The copyright holder for this preprint (which 1/31/2019was not certified by peer review) is the author/funder,paper who lgc has species granted taxonomy bioRxiv a license - Google to display Documenten the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A genome-based species taxonomy of the Lactobacillus Genus Complex Stijn Wittouck1,2 , Sander Wuyts 1, Conor J Meehan3,4 , Vera van Noort2 , Sarah Lebeer1,* 1Research Group Environmental Ecology and Applied Microbiology, Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium 2Centre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium 3Unit of Mycobacteriology, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium 4BCCM/ITM Mycobacterial Culture Collection, Institute of Tropical Medicine, Antwerp, Belgium *Corresponding author; [email protected] Abstract Background: There are over 200 published species within the Lactobacillus Genus Complex (LGC), the majority of which have sequenced type strain genomes available. Although gold standard, genome-based species delimitation cutoffs are accepted by the community, they are seldom checked against currently available genome data. In addition, there are many species-level misclassification issues within the LGC. We constructed a de novo species taxonomy for the LGC based on 2,459 publicly available, decent-quality genomes and using a 94% core nucleotide identity threshold. We reconciled thesede novo species with published species and subspecies names by (i) identifying genomes of type strains in our dataset and (ii) performing comparisons based on 16S rRNA sequence identity against type strains. -
Propiedades Físicas Y Sensoriales De Un Pan Fresco, Con La Adición De Las Enzimas Lacasa, Xilanasa Y Lipasa Physical and Senso
Revista EIA, ISSN 1794-1237 / Año XII / Volumen 12 / Edición N.24 / Julio-diciembre 2015 / pp. 87-100 Publicación semestral de carácter técnico-científico / Escuela de Ingeniería de Antioquia —EIA—, Envigado (Colombia) PROPIEDADES FÍSICAS Y SENSORIALES DE UN PAN FRESCO, CON LA ADICIÓN DE LAS ENZIMAS LACASA, XILANASA Y LIPASA 1 2 Óscar Vega3 Rubén De Marco RESUMEN Cecilia Di Risio - El objetivo de la presente investigación fue evaluar algunas propiedades físicas y sensoriales de un pan elabora do con la combinación de las enzimas lacasa, xilanasa y lipasa, con el fin de proponer un producto panificable sin aditivos químicos. La metodología incluyó la determinación del volumen, volumen específico y análisis de características internas del pan como color de miga según la Norma IRAM 15858-1. El análisis sensorial se realizó mediante una mediante - prueba triangular compuesta por 38 jueces no entrenados, las diferencias significativas de los resultados se analizaron lumen de los panes obtenidos con las diferentes formulaciones varió entre 4,76 cm3 3, en tanto que el volumen las tablas Bengtsson’s con un nivel de significancia del 95 %. Como resultado principal se obtuvo que el vo 3 y 7,84 cm investigación versus especifico obtenido para la formulación de un pan compuesto por lacasa-xilanasa-lipasa fue de 5,23 cm /g. En cuanto al análisis sensorial, no reportó diferencias significativas la aceptabilidad del pan formulado en esta un pan con aditivos químicos tradicionales. Se puede concluir que la combinación de las tres enzimas utilizadas dio un lugarPALABRAS a un panificado CLAVE :con características propias del producto. -
Non-Wood Forest Products from Conifers
NO\ -WOOD FOREST PROaCTS 12 Non-wood forest products from conifers Food and Agriculture Organizahon of the United Nations NO \--WOOD FOREST PRODUCTS 12 Non-wood forest products from conifers by William M. Ciesla European Forest Institute FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Rome, 1998 Reprinted 2001 This paper discusses both traditional and contemporary uses of products from conifers. This material is presented for information only and does not imply endorsement by the author or by FAO. Some of those products have medicinal purposes; however, they should only be used under the care and guidance of a qualified physician. Transport of certain non-wood forest products (e.g. foliage, Christmas trees, seeds and landscape or ornamental plants) across international boundaries poses a risk of accidental transport and introduction of insects, fungi or other potentially destructive agents.Itis recommended that anyone planning to move plant materials across international boundaries check with appropriate authorities in the country from which the products are to be exported and the countries into which the products are to be imported for import permit requirements or restrictions which might apply. Movement of non-wood forest products across international boundaries may be subject to trade restrictions (both tariff and non-tariff). Appropriate authorities should be contacted prior to planned movement of any non-wood forest products across international boundaries. A review of trade restrictions affecting international trade in non-wood forest products may be found in Non-Wood Forest Products No. 8, 1995. The designations employed and the presentation of material in this publication do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. -
Rich Yeast Doughs
9 RICH YEAST DOUGHS AFTER READING THIS CHAPTER, YOU SHOULD BE ABLE TO: 1. Produce simple sweet doughs. 2. Produce laminated yeast doughs. 3. Make up a variety of products using sweet doughs, laminated doughs, and sweet-dough fillings and toppings. THIS CHAPTER COMPLETES the study of yeast doughs with a survey of the most important rich yeast doughs. As explained in Chapter 6, rich doughs are those with higher proportions of fat and, sometimes, sugar and eggs as well. Simple sweet-roll doughs are the easiest of these products to handle. Even these, however, require care, as they are usually softer and stickier than bread doughs. Because their gluten structure is not as strong as that of lean doughs, more care must be taken in proofing and baking sweet dough products. Laminated doughs, such as those for Danish pastries and croissants, are especially rich in fat because they consist of layers of butter between layers of dough. Like other sweet doughs, these yeast-leavened doughs are often the responsibility of 181 Gisslen-c09.indd 181 3/22/2016 4:35:38 PM 182 CHAPTER 9 RICH YEAST DOUGHS the pastry chef rather than the bread baker. Considerable practice and skill are required for the makeup of fine Danish products. As in Chapter 7, the dough formulas and makeup techniques covered in this chapter are given in separate sections because each dough can be made up into a great many items. This chapter also includes a selection of fillings and toppings suitable for rich yeast-dough products. Review Chapters 6, 7, and 8 with respect to the basic mixing methods and other produc- tion procedures for yeast doughs.