Title: Phenomena of Subterranean Life Author: Chilton, Charles Qualification: MD Year: 1899
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New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
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Contributions to Zoology, 70 (1) 23-39 (2001) SPB Academic Publishing bv, The Hague Hierarchical analysis of mtDNA variation and the use of mtDNA for isopod (Crustacea: Peracarida: Isopoda) systematics R. Wetzer Invertebrate Zoology, Crustacea, Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007, USA, [email protected] Keywords: 12S rRNA, 16S rRNA, COI, mitochondrial DNA, isopod, Crustacea, molecular Abstract Transition/transversion bias 30 Discussion 32 Nucleotide composition 32 Carefully collected molecular data and rigorous analyses are Transition/transversionbias 34 revolutionizing today’s phylogenetic studies. Althoughmolecular Sequence divergences 34 data have been used to estimate various invertebrate phylogenies Rate variation across 34 lor lineages more than a decade,this is the first ofdifferent study survey Conclusions 35 of regions mitochondrial DNA in isopod crustaceans assessing Acknowledgements 36 sequence divergence and hence the usefulness ofthese regions References 36 to infer phylogeny at different hierarchical levels. 1 evaluate three loci fromthe mitochondrial ribosomal RNAs genome (two (12S, 16S) and oneprotein-coding (COI)) for their appropriateness in inferring isopod phylogeny at the suborder level and below. Introduction The patterns are similar for all three loci with the most speciose suborders ofisopods also having the most divergent mitochondrial The crustacean order Isopoda is important and nucleotide sequences. Recommendations for designing an or- because it has a broad dis- der- or interesting geographic suborder-level molecular study in previously unstudied groups of Crustacea tribution and is diverse. There would include: (1) collecting a minimum morphologically are of two-four species or genera thoughtto be most divergent, (2) more than 10,000 described marine, freshwater, sampling the across of interest as equally as possible in group and terrestrial species, ranging in length from 0.5 terms of taxonomic representation and the distributionofspecies, mm to 440 mm. -
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Memoirs of the Museum of Victoria 59(2): 457–529 (2002) NEW PHREATOICIDEA (CRUSTACEA: ISOPODA) FROM GRAMPIANS NATIONAL PARK, WITH REVISIONS OF SYNAMPHISOPUS AND PHREATOICOPSIS GEORGE D.F. WILSON AND STEPHEN J. KEABLE Australian Museum, Sydney, NSW 2010, Australia ([email protected]; [email protected]) Abstract Wilson, G.D.F. and Keable S.J. 2002. New Phreatoicidea (Crustacea: Isopoda) from Grampians National Park, with revisions of Synamphisopus and Phreatoicopsis. Memoirs of Museum Victoria 59(2): 457–529. The Grampians National Park, Victoria, has substantial environmental significance owing to the diversity of endemic species restricted to this reserve. We reinforce this observation by reporting six new species and two new genera of isopod crustaceans endemic to the Grampians, and redescribe two previously known Victorian species representing formerly monotypic genera. These isopods are members of the ancient suborder Phreatoicidea, and show diverse morphologies. To demonstrate the basis for the classification of these species, we present a phylogenetic analysis of exemplar species of most extant genera of Phreatoicidea. Our analysis supports the sister group relationship of Phreatoicopsis and Synamphisopus. We observe a rudimentary accessory flagellum on the antennulae of both genera, but this isopod plesiomorphy optimises on the cladograms as a reversal. Two new genera, Naiopegia gen. nov. and Gariwerdeus gen. nov., are members of the Phreatoicidae, but are distinct from any described taxa in this family. Various metazoan and protist epibionts are commonly encoun- tered on these isopods. These species are described using detailed scanning electron microscopy and inked drawings: family Amphisopodidae, Phreatoicopsis raffae sp. nov., Phreatoicopsis terricola Spencer and Hall, 1897, Synamphisopus doegi sp. -
Additions to and Revisions of the Amphipod (Crustacea: Amphipoda) Fauna of South Africa, with a List of Currently Known Species from the Region
Additions to and revisions of the amphipod (Crustacea: Amphipoda) fauna of South Africa, with a list of currently known species from the region Rebecca Milne Department of Biological Sciences & Marine Research Institute, University of CapeTown, Rondebosch, 7700 South Africa & Charles L. Griffiths* Department of Biological Sciences & Marine Research Institute, University of CapeTown, Rondebosch, 7700 South Africa E-mail: [email protected] (with 13 figures) Received 25 June 2013. Accepted 23 August 2013 Three species of marine Amphipoda, Peramphithoe africana, Varohios serratus and Ceradocus isimangaliso, are described as new to science and an additional 13 species are recorded from South Africa for the first time. Twelve of these new records originate from collecting expeditions to Sodwana Bay in northern KwaZulu-Natal, while one is an introduced species newly recorded from Simon’s Town Harbour. In addition, we collate all additions and revisions to the regional amphipod fauna that have taken place since the last major monographs of each group and produce a comprehensive, updated faunal list for the region. A total of 483 amphipod species are currently recognized from continental South Africa and its Exclusive Economic Zone . Of these, 35 are restricted to freshwater habitats, seven are terrestrial forms, and the remainder either marine or estuarine. The fauna includes 117 members of the suborder Corophiidea, 260 of the suborder Gammaridea, 105 of the suborder Hyperiidea and a single described representative of the suborder Ingolfiellidea. -
Ancient Endemism Among Freshwater Isopods (Crustacea^ Phreatoicidea)
Ancient endemism among freshwater isopods (Crustacea^ Phreatoicidea) George D. F. Wilson1 and Richard T. Johnson1 Centre for Evolutionary Research, The Australian Museum, 6 College Street, Sydney, New South Wales 2000 Ancient clades with restricted geographic distributions have been found in the isopod crustacean suborder Phreatoicidea. These isopods colonized fresh water in Gondwana by the Triassic Era and today are restricted to permanent groundwaters. A phylogenetic analysis of 21 exemplar species showed that major cladogenic events took place prior to the fragmentation of Gondwana. Nichollsia, a genus restricted to India, was deeply nested within a Western Australian and Victorian clade. The Phreatoicidae branched off early in all cladograms, with Australian and New Zealand sister clades. Some clades may be closely associated with Gondwanan landmasses that were subdivided by shallow Cretaceous seas. INTRODUCTION distinct genetic forms known from the South Australian artesian springs of the Lake Eyre The Phreatoicidea are the earliest derived supergroup (M. Adams, Environmental Report, isopod Crustacea (Brusca and Wilson 1991), Kinhill Engineers Pty Ltd); Hypsimetopus sp. appearing in the marine fossil record during from near Zeehan, Tasmania, possibly the Carboniferous (~325 mybp: Hessler conspecific with H. intrusor Sayce 1902 but 1969; Schram 1970, 1974). Phreatoicideans variation has not been fully evaluated; cf. invaded fresh waters of the Gondwanan Hyperoedesipus sp. from the Pilbara region supercontinent by the Triassic (Protamphisopus of Western Australia, a new genus with wianamattensis (Chilton 1918), see Nicholls presumed affinities to H. plumosus Nicholls 1943) and subsequently became extinct in the and Milner 1923. The Tasmanian genera oceans. Today, phreatoicideans are restricted are poorly defined but are labelled in Figure to permanent fresh waters and occur in 1 to indicate the possible phreatoicidean Australia as well as on a few other continental diversity of this area. -
Conservation Assessment for Packard's Cave Amphipod
Conservation Assessment for Packard’s Cave Amphipod (Crangonyx packardi) (Zhang, 1997) USDA Forest Service, Eastern Region October 2002 Julian J. Lewis, Ph.D. J. Lewis & Associates, Biological Consulting 217 W. Carter Avenue Clarksville, IN 47129 [email protected] This Conservation Assessment was prepared to compile the published and unpublished information on Crangonyx packardi. It does not represent a management decision by the U.S. Forest Service. Though the best scientific information available was used and subject experts were consulted in preparation of this document, it is expected that new information will arise. In the spirit of continuous learning and adaptive management, if you have information that will assist in conserving the subject community and associated taxa, please contact the Eastern Region of the Forest Service Threatened and Endangered Species Program at 310 Wisconsin Avenue, Milwaukee, Wisconsin 53203. Conservation Assessment for Packard’s Cave Amphipod (Crangonyx packardi) 2 Table of Contents EXECUTIVE SUMMARY .......................................................................... 4 NOMENCLATURE AN DTAXONOMY .................................................. 4 DESCRIPTION OF SPECIES .................................................................... 4 LIFE HISTORY............................................................................................ 5 HABITAT ...................................................................................................... 5 DISTRIBUTION AND ABUNDANCE ..................................................... -
The Phreatoicoidea Family Phreatoicidae
PAl'. & PHOC. ROY. Soc. TASMANIA, 194-:i (15TH DECEMBER, Hl4·L) 1 The Phreatoicoidea By G. E. NICHOLLS Professor of Biology, Un·i?Jersity of Western Australia (Read 16th November, 1948) PART II.-The PHREATOICIDAE Family Phreatoicidae Right mandible without lacinic~ mob1:lis. Body sub-cylindrical, pi eon compressed; head relatively long, generally with posterior process; cervical groove usually well developed; first peraeon segment normally not fused to the head; the tel son as a rule produced into terminal projection. Maxillula usually with few setospines on apex of proximal endite; coxae of peraeopods generally free from pleura of related segments; bases of hinder peraeopods moderately, or scarcely, expanded. As has already been noted (Part I, p. 25), the essential distinction between the Amphisopidae and the Phreatoicidae is found in the retention or the loss of the secondary cutting edge of the right mandible. Since a similar reduction in that appendage has also taken place independently in some Amphipoda as well as in several groups of the Isopocla, that moclification might be attributable to difference in dietary or mode of life, but such an explana tion will not avail for the Phreatoicidae, all of which seem to be humus feeders. ·within the sub-order, the degradation or complete disappearance of this lacinia could, of course, have occurred independently in more genera than one and, thus, forms which lack the right lncinin nwb-ais need not necessarily be near akin, but, on the other hand, its occurrence must have a phyletic significance, since its n~tention can only be interpreted as an inheritance from a common ancestor. -
Crangonyx Pseudogracilis Bousfield, 1958 – the First Alien Amphipod Crustacean in Freshwaters of Iberian Peninsula (Portugal) M
Knowledge and Management of Aquatic Ecosystems (2012) 404, 11 © ONEMA, 2012 http://www.kmae-journal.org DOI: 10.1051/kmae/2012005 Crangonyx pseudogracilis Bousfield, 1958 – the first alien amphipod crustacean in freshwaters of Iberian Peninsula (Portugal) M. Grabowski(1)*, M. Rachalewski(1,2), F. Banha(2), P. Anastacio(2) Received January 12, 2012 Revised February 28, 2012 Accepted March 6, 2012 ABSTRACT Key-words: Crangonyx pseudogracilis, a North American crangonyctid amphipod, was alien species, found in a stream of Santarém District (Portugal) in September 2011. It is aquatic the first record of this species from the Iberian Peninsula. Exact time, mode invasions, of introduction and distribution of C. pseudogracilis in the area remain inland waters, unknown. So far its occurrence was reported only from several countries Mediterranean in north-western Europe. A short overview upon the species general dis- region, tribution, ecology and invasive potential is provided. Crangonyctidae, first record RÉSUMÉ Crangonyx pseudogracilis Bousfield, 1958 – le premier crustacé amphipode non-natif dans les eaux douces de la péninsule ibérique (Portugal) Mots-clés : Crangonyx pseudogracilis, un amphipode crangonyctid d'Amérique du Nord, a été espèces trouvé dans un ruisseau du district de Santarém (Portugal) en Septembre 2011. Il exotiques, est le premier enregistrement de cette espèce dans la péninsule ibérique. La date invasions et le mode d'introduction et la répartition de C. pseudogracilis dans la région res- d'espèces tent inconnus. Jusqu'ici, sa présence n'a été signalée que dans plusieurs pays du aquatiques, nord-ouest de l'Europe. Un bref aperçu sur la distribution de l'espèce, l'écologie région et son potentiel invasif est fourni. -
Molecular Phylogenetics Supports the Ancient Laurasian Origin of Old Limnic Crangonyctid Amphipods
Organisms Diversity & Evolution (2019) 19:191–207 https://doi.org/10.1007/s13127-019-00401-7 ORIGINAL ARTICLE Adrift across tectonic plates: molecular phylogenetics supports the ancient Laurasian origin of old limnic crangonyctid amphipods Denis Copilaş-Ciocianu1,2 & Dmitry Sidorov3 & Andrey Gontcharov3 Received: 24 October 2018 /Accepted: 6 March 2019 /Published online: 22 March 2019 # Gesellschaft für Biologische Systematik 2019, corrected publication 2019 Abstract Crangonyctidae is a speciose and almost exclusively freshwater Holarctic family of amphipod crustaceans. Its members inhabit groundwater as well as epigean biotopes with groundwater connections, and often exhibit endemic, relict distributions. Therefore, it has been proposed that this poorly dispersing, yet intercontinentally distributed family must have ancient Mesozoic origins. Here, we test the hypothesis that Crangonyctidae originated before the final break-up of Laurasia at the end of the Cretaceous. We used molecular phylogenetic analyses based on mitochondrial and nuclear markers and incorporated six out of the seven recognized genera. We calculated divergence times using a novel calibration scheme based exclusively on fossils and, for comparison, also applied substitution rates previously inferred for other arthropods. Our results indicate that crangonyctids originated during the Early Cretaceous in a northerly temperate area comprising nowadays North America and Europe, supporting the Laurasian origin hypothesis. Moreover, high latitude lineages were found to be generally older than the ones at lower latitudes, further supporting the boreal origin of the group and its relict biogeography. The estimated substitution rate of 1.773% Ma−1 for the COI marker agrees well with other arthropod rates, making it appropriate for dating divergences at various phylogenetic levels within the Amphipoda. -
Title Description and Distribution of Crangonyx Floridanus (Crustacea : Amphipoda : Crangonyctidae) in Japan, an Introduced Fres
Description and distribution of Crangonyx floridanus Title (Crustacea : Amphipoda : Crangonyctidae) in Japan, an introduced freshwater amphipod from North America Author(s) MORINO, Hiroshi; KUSANO, Harumi; HOLSINGER, John R Contributions from the Biological Laboratory, Kyoto Citation University (2004), 29(4): 371-381 Issue Date 2004-07-21 URL http://hdl.handle.net/2433/156414 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University Contr. biol. Lab. Kyoto Univ., Vol. 29, pp. 371-381. Issued 21 July 2004 Description and distribution of CrangonyxfZoridanus (Crustacea: Amphipoda: Crangonyctidae) in Japan, an introduced freshwater amphipod from North America Hiroshi MORINO'), Harumi KUSAN02) and John R. HOLSINGER3) ') Department of Environmenta1 Sciences, Ibaraki Uniyersity, Mito, 310-8512 Japan 2) Suge 4-9-26, Tama-ku, Kawasaki, Kanagawa, 214-Ooo1 Japan 3) Department of Biological Sciences, Old Dominion University, Norfolk, Virginia 23529, USA ABSTRAer The Japanese populations of Crangonyx floridanus Bousfield, 1963 are taxonomically diagnosed with illustration. Distributional analysis suggests that C. VToridanus was introduced from North America in 1980's and now expanding the range from middle Honshu to western Japan. KEY WORDS amphipod / Crangonyxfloridcmus / Japan / introduced species Introduction The first discovery of Crangonyx florianus in Japan was in 1989, from a pond in Chiba Prefecture (the animals were not identified to species at that time; see Tamura, 1990). The amphipods from the pond were forwarded to the third author in 1992, who immediately identified them as C. floridanus, an indigenous amphipod species in North America. This information was then spread to researchers mainly through personal communications, and thereafter in Japan, records of this species began to appear in literature of local faunal studies (e.g., Kanada, 2002; Morino, 2002) or reports from agencies for environmental studies (e.g., Tokyo Metropolitan Government, 1997-2oo3; Masaki, et al., 2oo3; Kanada and Fukushima, 2004). -
First Detection of a Highly Invasive Freshwater Amphipod (Crangonyx Floridanus) in the United
bioRxiv preprint doi: https://doi.org/10.1101/437301; this version posted October 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. First detection of a highly invasive freshwater amphipod (Crangonyx floridanus) in the United Kingdom Quentin Mauvisseau 1,2, John Davy-Bowker 3,4, David Bryson 5, Graham R. Souch 1, Alfred Burian 1, Michael Sweet 1 ¹ Aquatic Research Facility, Environmental Sustainability Research Centre, University of Derby, Derby, DE22 1GB, UK 2 Surescreen Scientifics Ltd, Morley Retreat, Church Lane, Morley, DE7 6DE, UK 3 Freshwater Biological Association, River Laboratory, East Stoke, Wareham, Dorset, BH20 6BB, UK 4 Natural History Museum, Cromwell Road, London, SW7 5BD, UK 5 Forensic Anthropology and Photography, Department of Biomedical and Forensic Science, School of Human Sciences, College of Life and Natural Sciences, University of Derby, DE22 1GB, UK Quentin Mauvisseau: ORCID 0000-0003-1215-2987 David Bryson: ORCID 0000-0002-3086-7946 Alfred Burian: ORCID 0000-0002-4928-0897 Michael Sweet: ORCID 0000-0003-4983-8333 Corresponding author: [email protected] Abstract The freshwater gammarid, Crangonyx floridanus, originates from North America but has invaded and subsequently spread rapidly throughout Japan. We provide here the first genetic and microscopic evidence that C. floridanus has now also reached the United Kingdom. We found this species in two bioRxiv preprint doi: https://doi.org/10.1101/437301; this version posted October 11, 2018. -
Kakadu National Park Ramsar Site Ecological Character Description
Kakadu National Park Ramsar Site Ecological Character Description Image credits: M. McAulay & DEWHA; J. Baker; S. Stuart-Smith; M. McAulay & DEWHA; B. Furby CONTENTS CONTENTS Contents i List of Figures iv List of Tables vii Acknowledgments ix List of Abbreviations xi Executive Summary xiii 1 INTRODUCTION 1 1.1 Background 1 1.2 Scope and Purpose of this Study 2 1.3 Relevant Treaties, Legislation and Regulations 5 1.3.1 Australian Government Legislation or Policy Instruments 5 1.3.2 Northern Territory Legislation or Policy Instruments 9 1.4 Key Terminology and Concepts 10 1.4.1 Wetland Processes 10 1.4.2 Wetland Components 10 1.4.3 Wetland Services/Benefits 11 1.4.4 Interaction of Wetland Elements 11 1.4.5 Bioregionalisation Scheme 12 2 DESCRIPTION OF THE SITE 16 2.1 Details of the Site- Summary 16 2.2 Location and Brief Description 16 2.3 Land Use and Tenure 21 2.3.1 Tenure and Land Use within the Site 21 2.3.2 Tenure and Land Use Adjacent to the Site 22 2.4 Description of Wetland Types 23 2.4.1 Marine/Coastal Wetland Types Present 27 2.4.2 Inland Wetland Types Present 34 2.4.3 Discrepancies with the 1998 RISs 41 2.5 Nomination Criteria Met by the Site 42 2.5.1 Criteria Under which the Site was Designated 42 2.5.2 Assessment Based on Current Information and Ramsar Criteria 45 I CONTENTS 2.5.3 Criterion 1 46 2.5.4 Criterion 2 48 2.5.5 Criterion 3 51 2.5.6 Criterion 4 53 2.5.7 Criterion 5 55 2.5.8 Criterion 6 56 2.5.9 Criterion 7 57 2.5.10 Criterion 8 58 2.5.11 Criterion 9 59 3 CRITICAL COMPONENTS, PROCESSES AND SERVICES/BENEFITS 61 3.1