Ethanol, Catecholamines and Alkaloids: Interface of Neurochemistry and Alcoholism
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Transfer of Pseudomonas Plantarii and Pseudomonas Glumae to Burkholderia As Burkholderia Spp
INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, Apr. 1994, p. 235-245 Vol. 44, No. 2 0020-7713/94/$04.00+0 Copyright 0 1994, International Union of Microbiological Societies Transfer of Pseudomonas plantarii and Pseudomonas glumae to Burkholderia as Burkholderia spp. and Description of Burkholderia vandii sp. nov. TEIZI URAKAMI, ’ * CHIEKO ITO-YOSHIDA,’ HISAYA ARAKI,’ TOSHIO KIJIMA,3 KEN-ICHIRO SUZUKI,4 AND MU0KOMAGATA’T Biochemicals Division, Mitsubishi Gas Chemical Co., Shibaura, Minato-ku, Tokyo 105, Niigata Research Laboratory, Mitsubishi Gas Chemical Co., Tayuhama, Niigatu 950-31, ’Plant Pathological Division of Biotechnology, Tochigi Agricultural Experiment Station, Utsunomiya 320, Japan Collection of Microorganisms, The Institute of Physical and Chemical Research, Wako-shi, Saitama 351-01,4 and Institute of Molecular Cell and Biology, The University of Tokyo, Bunkyo-ku, Tokyo 113,’ Japan Plant-associated bacteria were characterized and are discussed in relation to authentic members of the genus Pseudomonas sensu stricto. Bacteria belonging to Pseudomonas rRNA group I1 are separated clearly from members of the genus Pseudomonas sensu stricto (Pseudomonasfluorescens rRNA group) on the basis of plant association characteristics, chemotaxonomic characteristics, DNA-DNA hybridization data, rRNA-DNA hy- bridization data, and the sequences of 5s and 16s rRNAs. The transfer of Pseudomonas cepacia, Pseudomonas mallei, Pseudomonas pseudomallei, Pseudomonas caryophylli, Pseudomonas gladioli, Pseudomonas pickettii, and Pseudomonas solanacearum to the new genus Burkholderia is supported; we also propose that Pseudomonas plantarii and Pseudomonas glumae should be transferred to the genus Burkholderia. Isolate VA-1316T (T = type strain) was distinguished from Burkholderia species on the basis of physiological characteristics and DNA-DNA hybridization data. A new species, Burkholderia vandii sp. -
Caomatograpby
rOURNAL DF LIQUID CaOMATOGRAPBY VOLUME 18 NUMBER 7 1995 ~ditor: DR. JACK CAZES ~ssociate Editors: DR. HALEEM J. ISSAQ DR. STEVEN H. WONG Special Section on CAPILlARY ZONE ELECTROPHORESIS AND REIATED TECHNIQUES Edited by HALEEM J. ISSAQ NCI-Frederick Cancer Research & Development Center Frederick, Maryland JOURNAL OF LIQUID CHROMATOGRAPHY April 1995 Aims and Scope. The journal publishes papers involving the applications of liquid chromatography to the solution of problems in all areas of science and technology, both analytical and preparative, as well as papers that deal specifically with liquid chromatography as a science within itself. Included will be thin-layer chromatography and all models of liquid chromatography. IdentiilCation Statement. Journal of Liquid Chromatography (lSSN: 0148-3919) is published semimonthly except monthly in May, August, October, and December for the institutional rate of $1,450.00 and the individual rate of $725.00 by Marcel Dekker, Inc., P.O. Box 5005, Monticello, NY 12701-5185. Second Class postage paid at Monticello, NY. POSTMASTER: Send address changes to Journal ofLiquid Chromatography, P.O. Box 5005, Monticello, NY 12701-5185. Individual Foreign Postage Professionals' Institutional and Student Airmail Airmail Volume Issues Rate Rate Surface to Europe to Asia 18 20 $1,450.00 $725.00 $70.00 $110.00 $130.00 Individual professionals' and student orders must be prepaid by personal check or may be charged to MasterCard, VISA, or American Express. Please mail payment with your order to: Marcel Dekker Journals, P.O. Box 5017, Monticello, New York 12701-5176. CODEN: JLCHD8 18(7) i-iv, 1273-1494 (1995) ISSN: 0148-3919 Printed in the U.S.A. -
Understanding Drug-Drug Interactions Due to Mechanism-Based Inhibition in Clinical Practice
pharmaceutics Review Mechanisms of CYP450 Inhibition: Understanding Drug-Drug Interactions Due to Mechanism-Based Inhibition in Clinical Practice Malavika Deodhar 1, Sweilem B Al Rihani 1 , Meghan J. Arwood 1, Lucy Darakjian 1, Pamela Dow 1 , Jacques Turgeon 1,2 and Veronique Michaud 1,2,* 1 Tabula Rasa HealthCare Precision Pharmacotherapy Research and Development Institute, Orlando, FL 32827, USA; [email protected] (M.D.); [email protected] (S.B.A.R.); [email protected] (M.J.A.); [email protected] (L.D.); [email protected] (P.D.); [email protected] (J.T.) 2 Faculty of Pharmacy, Université de Montréal, Montreal, QC H3C 3J7, Canada * Correspondence: [email protected]; Tel.: +1-856-938-8697 Received: 5 August 2020; Accepted: 31 August 2020; Published: 4 September 2020 Abstract: In an ageing society, polypharmacy has become a major public health and economic issue. Overuse of medications, especially in patients with chronic diseases, carries major health risks. One common consequence of polypharmacy is the increased emergence of adverse drug events, mainly from drug–drug interactions. The majority of currently available drugs are metabolized by CYP450 enzymes. Interactions due to shared CYP450-mediated metabolic pathways for two or more drugs are frequent, especially through reversible or irreversible CYP450 inhibition. The magnitude of these interactions depends on several factors, including varying affinity and concentration of substrates, time delay between the administration of the drugs, and mechanisms of CYP450 inhibition. Various types of CYP450 inhibition (competitive, non-competitive, mechanism-based) have been observed clinically, and interactions of these types require a distinct clinical management strategy. This review focuses on mechanism-based inhibition, which occurs when a substrate forms a reactive intermediate, creating a stable enzyme–intermediate complex that irreversibly reduces enzyme activity. -
Journal of Inorganic Biochemistry 187 (2018) 73–84
Journal of Inorganic Biochemistry 187 (2018) 73–84 Contents lists available at ScienceDirect Journal of Inorganic Biochemistry journal homepage: www.elsevier.com/locate/jinorgbio New heterobimetallic ferrocenyl derivatives: Evaluation of their potential as prospective agents against trypanosomatid parasites and Mycobacterium T tuberculosis Feriannys Rivasa, Andrea Medeirosb,c, Esteban Rodríguez Arcea, Marcelo Cominib, ⁎ Camila M. Ribeirod, Fernando R. Pavand, Dinorah Gambinoa, a Área Química Inorgánica, Facultad de Química, Universidad de la República, Montevideo, Uruguay b Group Redox Biology of Trypanosomes, Institut Pasteur Montevideo, Montevideo, Uruguay c Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay d Faculdade de Ciências Farmacêuticas, UNESP, Araraquara, Brazil ARTICLE INFO ABSTRACT Keywords: Searching for prospective agents against infectious diseases, four new ferrocenyl derivatives, [M(L)(dppf)4] Ferrocenyl compounds (PF6), with M = Pd(II) or Pt(II), dppf = 1,1′-bis(dipheny1phosphino) ferrocene and HL = tropolone (HTrop) or Tropolone derivatives hinokitiol (HHino), were synthesized and characterized. Complexes and ligands were evaluated against the Trypanosoma brucei bloodstream form of T. brucei, L. infantum amastigotes, M. tuberculosis (MTB) sensitive strain and MTB clinical Mycobacterium tuberculosis isolates. Complexes showed a significant increase of the anti-T. brucei activity with respect to the free ligands Leishmaniasis (> 28- and > 46-fold for Trop and 6- and 22-fold for Hino coordinated to Pt-dppf and Pd-dppf, respectively), yielding IC50 values < 5 μM. The complexes proved to be more potent than the antitrypanosomal drug Nifurtimox. The new ferrocenyl derivatives were more selective towards the parasite than the free ligands. The Pt compounds were less toxic on J774 murine macrophages (mammalian cell model), than the Pd ones, showing selectivity index values (SI = IC50 murine macrophage/IC50 T. -
Identification and Analysis of Hepatitis C Virus NS3 Helicase Inhibitors Using Nucleic Acid Binding Assays Sourav Mukherjee1, Alicia M
Published online 27 June 2012 Nucleic Acids Research, 2012, Vol. 40, No. 17 8607–8621 doi:10.1093/nar/gks623 Identification and analysis of hepatitis C virus NS3 helicase inhibitors using nucleic acid binding assays Sourav Mukherjee1, Alicia M. Hanson1, William R. Shadrick1, Jean Ndjomou1, Noreena L. Sweeney1, John J. Hernandez1, Diana Bartczak1, Kelin Li2, Kevin J. Frankowski2, Julie A. Heck3, Leggy A. Arnold1, Frank J. Schoenen2 and David N. Frick1,* 1Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, 2University of Kansas Specialized Chemistry Center, University of Kansas, 2034 Becker Dr., Lawrence, KS 66047 and 3Department of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA Received March 26, 2012; Revised May 30, 2012; Accepted June 4, 2012 Downloaded from ABSTRACT INTRODUCTION Typical assays used to discover and analyze small All cells and viruses need helicases to read, replicate and molecules that inhibit the hepatitis C virus (HCV) repair their genomes. Cellular organisms encode NS3 helicase yield few hits and are often con- numerous specialized helicases that unwind DNA, RNA http://nar.oxfordjournals.org/ founded by compound interference. Oligonucleotide or displace nucleic acid binding proteins in reactions binding assays are examined here as an alternative. fuelled by ATP hydrolysis. Small molecules that inhibit After comparing fluorescence polarization (FP), helicases would therefore be valuable as molecular homogeneous time-resolved fluorescence (HTRFÕ; probes to understand the biological role of a particular Cisbio) and AlphaScreenÕ (Perkin Elmer) assays, helicase, or as antibiotic or antiviral drugs (1,2). For an FP-based assay was chosen to screen Sigma’s example, several compounds that inhibit a helicase Library of Pharmacologically Active Compounds encoded by herpes simplex virus (HSV) are potent drugs in animal models (3,4). -
Pharmacological Targeting of the Mitochondrial Phosphatase PTPMT1 by Dahlia Doughty Shenton Department of Biochemistry Duke
Pharmacological Targeting of the Mitochondrial Phosphatase PTPMT1 by Dahlia Doughty Shenton Department of Biochemistry Duke University Date: May 1 st 2009 Approved: ___________________________ Dr. Patrick J. Casey, Supervisor ___________________________ Dr. Perry J. Blackshear ___________________________ Dr. Anthony R. Means ___________________________ Dr. Christopher B. Newgard ___________________________ Dr. John D. York Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biochemistry in the Graduate School of Duke University 2009 ABSTRACT Pharmacological Targeting of the Mitochondrial Phosphatase PTPMT1 by Dahlia Doughty Shenton Department of Biochemistry Duke University Date: May 1 st 2009 Approved: ___________________________ Dr. Patrick J. Casey, Supervisor ___________________________ Dr. Perry J. Blackshear ___________________________ Dr. Anthony R. Means ___________________________ Dr. Christopher B. Newgard ___________________________ Dr. John D. York An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biochemistry in the Graduate School of Duke University 2009 Copyright by Dahlia Doughty Shenton 2009 Abstract The dual specificity protein tyrosine phosphatases comprise the largest and most diverse group of protein tyrosine phosphatases and play integral roles in the regulation of cell signaling events. The dual specificity protein tyrosine phosphatases impact multiple -
Content by Dr. Vishvanath Tiwari 1 E-PG Pathshala for Biophysics
e-PG Pathshala for Biophysics, MHRD project, UGC PI: Prof M.R. Rajeswari, A.I.I.M.S., New Delhi Paper 05: Molecular Enzymology and Protein Engineering Module No. 13: Mechanism and Kinetics of Competitive inhibition Content writer: Dr. Vishvanath Tiwari Department of Biochemistry, Central University of Rajasthan, Ajmer-305817 Objective: Objective of the present module is to understand the mechanism and kinetics of the competitive inhibition as well as role of dissociation constant of inhibitor in drug designing. We will also discuss the different examples of the competitive inhibition. This module is divided into following sections- 1. Introduction 2. Competitive inhibition 2.1 Mechanism of competitive inhibitor 2.2 Kinetics of competitive inhibitor 2.3 Determination of dissociation constant for competitive inhibitor 2.4 Examples of competitive inhibitors 4. Significance of the competitive inhibition in drug designing 3. Summary 4. Question 5. Resources and suggested reading 1. Introduction: The negative regulator or enzyme inhibitor can reduce the rate of enzyme-catalyzed reaction. Inhibition of the enzyme could be significant in term of inhibiting the crucial Content by Dr. Vishvanath Tiwari 1 enzymatic pathways. Enzyme inhibitions are irreversible, suicide, feedback and reversible inhibition. Reversible inhibition involves weak non-covalent interactions between enzyme and inhibitors. The non-covalent interaction involves hydrogen bonding, hydrophobic interactions, van der Waal’s forces and salt bridges. The cumulative effects of these interactions result into strong interactions. Because of weak non-covalent interactions, reversible inhibitor can be separated from the enzymes therefore the name reversible inhibition is given. On the basis of effect of varying concentration of enzyme’s substrate on the inhibitor, Dr. -
Inhibition of Monoamine Oxidase Activity by Antidepressants and Mood Stabilizers
Biogenic Amines Vol. 25, issue 1 (2011), pp. 59–81 BIA250111A02 Inhibition of monoamine oxidase activity by antidepressants and mood stabilizers Reprinted from: Neuroendocrinology Letters 2010; 31(5): 645–656. Zdeněk Fišar, Jana Hroudová, Jiří Raboch Department of Psychiatry, First Faculty of Medicine, Charles University in Prague and General University Hospital in Prague, Prague, Czech Republic. Key words: antidepressive agents; monoamine oxidase inhibitors; mood stabilizers Abstract Monoamine oxidase (MAO), the enzyme responsible for metabolism of mono- amine neurotransmitters, has an important role in the brain development and function, and MAO inhibitors have a range of potential therapeutic uses. We investigated systematically in vitro effects of pharmacologically different antide- pressants and mood stabilizers on MAO activity. Effects of drugs on the activity of MAO were measured in crude mitochondrial fraction isolated from cortex of pig brain, when radiolabeled serotonin (for MAO-A) or phenylethylamine (for MAO-B) was used as substrate. The several antidepressants and mood stabilizers were compared with effects of well known MAO inhibitors such as moclobemide, iproniazid, pargyline, and clorgyline. In general, the effect of tested drugs was found to be inhibitory. The half maximal inhibitory concentration, parameters of enzyme kinetic, and mechanism of inhibi- tion were determined. MAO-A was inhibited by the following drugs: pargyline > clorgyline > iproniazid > fluoxetine > desipramine > amitriptyline > imipramine > citalopram > venlafaxine > reboxetine > olanzapine > mirtazapine > tianeptine > moclobemide, cocaine >> lithium, valproate. MAO-B was inhibited by the following drugs: pargyline > clorgyline > iproniazid > fluoxetine > venlafaxine > amitriptyline > olanzapine > citalopram > desipramine > reboxetine > imipramine > tianeptine > mirtazapine, cocaine >> moclobemide, lithium, valproate. The mechanism of inhibition of MAOs by several antidepressants was found various. -
Chemical Evidence for Potent Xanthine Oxidase Inhibitory Activity of Ethyl Acetate Extract of Citrus Aurantium L
molecules Article Chemical Evidence for Potent Xanthine Oxidase Inhibitory Activity of Ethyl Acetate Extract of Citrus aurantium L. Dried Immature Fruits Kun Liu, Wei Wang *, Bing-Hua Guo, Hua Gao, Yang Liu, Xiao-Hong Liu, Hui-Li Yao and Kun Cheng School of Pharmacy, Qingdao University, Qingdao 266021, Shandong, China; [email protected] (K.L.); [email protected] (B.-H.G.); [email protected] (H.G.); [email protected] (Y.L.); [email protected] (X.-H.L.); [email protected] (H.-L.Y.); [email protected] (K.C.) * Correspondence: [email protected]; Tel./Fax: +86-532-869-91172 Academic Editor: Isabel C. F. R. Ferreira Received: 24 January 2016 ; Accepted: 29 February 2016 ; Published: 2 March 2016 Abstract: Xanthine oxidase is a key enzyme which can catalyze hypoxanthine and xanthine to uric acid causing hyperuricemia in humans. Xanthine oxidase inhibitory activities of 24 organic extracts of four species belonging to Citrus genus of the family Rutaceae were assayed in vitro. Since the ethyl acetate extract of C. aurantium dried immature fruits showed the highest xanthine oxidase inhibitory activity, chemical evidence for the potent inhibitory activity was clarified on the basis of structure identification of the active constituents. Five flavanones and two polymethoxyflavones were isolated and evaluated for inhibitory activity against xanthine oxidase in vitro. Of the compounds, hesperetin showed more potent inhibitory activity with an IC50 value of 16.48 µM. For the first time, this study provides a rational basis for the use of C. aurantium dried immature fruits against hyperuricemia. Keywords: Citrus; xanthine oxidase; aurantii fructus immaturus; hesperetin 1. -
Structural and Inhibition Studies on Udp-Galactopyranose Mutase
STRUCTURAL AND INHIBITION STUDIES ON UDP-GALACTOPYRANOSE MUTASE A Thesis Submitted to the College of Graduate Studies and Research in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy In the Department of Chemistry University of Saskatchewan By Sarathy Karunan Partha © Copyright Sarathy Karunan Partha, October 2010. All rights reserved Permission to Use In presenting this thesis in partial fulfilment of the requirements for a Postgraduate degree from the University of Saskatchewan, I agree that the Libraries of this University may make it freely available for inspection. I further agree that permission for copying of this thesis in any manner, in whole or in part, for scholarly purposes may be granted by the professor or professors who supervised my thesis work or, in their absence, by the Head of the Department or the Dean of the College in which my thesis work was done. It is understood that any copying or publication or use of this thesis or parts thereof for financial gain shall not be allowed without my written permission. It is also understood that due recognition shall be given to me and to the University of Saskatchewan in any scholarly use which may be made of any material in my thesis. Requests for permission to copy or to make other use of material in this thesis in whole or part should be addressed to: Head of the Department of Chemistry University of Saskatchewan Saskatoon, Saskatchewan (S7N 5C9) i ABSTRACT UDP-galactopyranose mutase (UGM) is a flavoenzyme which catalyzes the interconversion of UDP-galactopyranose (UDP-Gal p) and UDP-galactofuranose (UDP- Gal f). -
Personal Care Products Are Only One of Many Exposure Routes of Natural Toxic Substances to Humans and the Environment
cosmetics Article Personal Care Products Are Only One of Many Exposure Routes of Natural Toxic Substances to Humans and the Environment Thomas D. Bucheli 1,*, Bjarne W. Strobel 2 and Hans Chr. Bruun Hansen 2 ID 1 Agroscope, Environmental Analytics, Reckenholzstrasse 191, 8046 Zürich, Switzerland 2 Department of Plant and Environmental Sciences (PLEN), University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Copenhagen, Denmark; [email protected] (B.W.S.); [email protected] (H.C.B.H.) * Correspondence: [email protected]; Tel.: +41-58-468-7342 Received: 1 December 2017; Accepted: 3 January 2018; Published: 9 January 2018 Abstract: The special issue “A Critical View on Natural Substances in Personal Care Products” is dedicated to addressing the multidisciplinary special challenges of natural ingredients in personal care products (PCP) and addresses also environmental exposure. In this perspective article, we argue that environmental exposure is probably not so much dominated by PCP use, but in many cases by direct emission from natural or anthropogenically managed vegetation, including agriculture. In support of this hypothesis, we provide examples of environmental fate and behaviour studies for compound classes that are either listed in the International Nomenclature of Cosmetics Ingredients (INCI) or have been discussed in a wider context of PCP applications and have been classified as potentially harmful to humans and the environment. Specifically, these include estrogenic isoflavones, the carcinogenic ptaquiloside and pyrrolizidine alkaloids, saponins, terpenes and terpenoids, such as artemisinin, and mycotoxins. Research gaps and challenges in the domains of human and environmental exposure assessment of natural products common to our currently rather separated research communities are highlighted. -
Development of a Novel, High-Affinity Ssdna Trypsin Inhibitor
Journal of Enzyme Inhibition and Medicinal Chemistry ISSN: 1475-6366 (Print) 1475-6374 (Online) Journal homepage: https://www.tandfonline.com/loi/ienz20 Development of a novel, high-affinity ssDNA trypsin inhibitor Stanislaw Malicki, Miroslaw Ksiazek, Pawel Majewski, Aleksandra Pecak, Piotr Mydel, Przemyslaw Grudnik & Grzegorz Dubin To cite this article: Stanislaw Malicki, Miroslaw Ksiazek, Pawel Majewski, Aleksandra Pecak, Piotr Mydel, Przemyslaw Grudnik & Grzegorz Dubin (2019) Development of a novel, high-affinity ssDNA trypsin inhibitor, Journal of Enzyme Inhibition and Medicinal Chemistry, 34:1, 638-643, DOI: 10.1080/14756366.2019.1569648 To link to this article: https://doi.org/10.1080/14756366.2019.1569648 © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. View supplementary material Published online: 06 Feb 2019. Submit your article to this journal Article views: 514 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=ienz20 JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY 2019, VOL. 34, NO. 1, 638–643 https://doi.org/10.1080/14756366.2019.1569648 SHORT COMMUNICATION Development of a novel, high-affinity ssDNA trypsin inhibitor Stanislaw Malickia,b, Miroslaw Ksiazeka,b,c, Pawel Majewskib, Aleksandra Pecaka,b, Piotr Mydelb,d, Przemyslaw Grudnika and Grzegorz Dubina,b aMalopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland; bDepartment of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland; cDepartment of Oral Immunology and Infectious Diseases, University of Louisville School of Dentistry, Kentucky, USA; dDepartment of Clinical Science, Broegelmann Research Laboratory, University of Bergen, Bergen, Norway ABSTRACT ARTICLE HISTORY Inhibitors of serine proteases are not only extremely useful in the basic research but are also Received 3 October 2018 applied extensively in clinical settings.