Effects of Nucleoside Triphosphates on Human Ribonucleotide Reductase from Molt-4F Cell&
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Nucleotide Metabolism 22
Nucleotide Metabolism 22 For additional ancillary materials related to this chapter, please visit thePoint. I. OVERVIEW Ribonucleoside and deoxyribonucleoside phosphates (nucleotides) are essential for all cells. Without them, neither ribonucleic acid (RNA) nor deoxyribonucleic acid (DNA) can be produced, and, therefore, proteins cannot be synthesized or cells proliferate. Nucleotides also serve as carriers of activated intermediates in the synthesis of some carbohydrates, lipids, and conjugated proteins (for example, uridine diphosphate [UDP]-glucose and cytidine diphosphate [CDP]- choline) and are structural components of several essential coenzymes, such as coenzyme A, flavin adenine dinucleotide (FAD[H2]), nicotinamide adenine dinucleotide (NAD[H]), and nicotinamide adenine dinucleotide phosphate (NADP[H]). Nucleotides, such as cyclic adenosine monophosphate (cAMP) and cyclic guanosine monophosphate (cGMP), serve as second messengers in signal transduction pathways. In addition, nucleotides play an important role as energy sources in the cell. Finally, nucleotides are important regulatory compounds for many of the pathways of intermediary metabolism, inhibiting or activating key enzymes. The purine and pyrimidine bases found in nucleotides can be synthesized de novo or can be obtained through salvage pathways that allow the reuse of the preformed bases resulting from normal cell turnover. [Note: Little of the purines and pyrimidines supplied by diet is utilized and is degraded instead.] II. STRUCTURE Nucleotides are composed of a nitrogenous base; a pentose monosaccharide; and one, two, or three phosphate groups. The nitrogen-containing bases belong to two families of compounds: the purines and the pyrimidines. A. Purine and pyrimidine bases Both DNA and RNA contain the same purine bases: adenine (A) and guanine (G). -
Effect of Cytidine on Membrane Phospholipid Synthesis in Rat Striatal Slices
Journal of Neurochemi,enry Raven Press, Ltd ., New York © 1995 International Society for Neurochemistry Effect of Cytidine on Membrane Phospholipid Synthesis in Rat Striatal Slices Vahide Savci and Richard J . Wurtman Delzcartrnent of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, U .S .A . Abstract : Using rat striatal slices, we examined the effect cell culture systems and in vivo experiments, exoge- of cytidine on the conversion of [ 3H]choline to [ 3H]- nous cytidine has been shown to be taken up into cells phosphatidylcholine ([ 3 H]PC), and on net syntheses of and converted sequentially to CMP, CDP, and CTP PC, phosphatidylethanolamine (PE), and phosphatidyl- (Plagemann, 1971a,b ; Trovarelli et al ., 1982 ; 1984 ; serine, when media did or did not also contain choline, Lopez G.-Coviella and Wurtman, 1992) . CTP is re- ethanolamine, or serine . Incubation of striatal slices with quired to form key intermediates in the biosynthesis cytidine (50-500 NM) caused dose-dependent increases in intracellular cytidine and cytidine triphosphate (CTP) of both phosphatidylcholine (PC) and phosphati- levels and in the rate of incorporation of [ 3H]choline into dylethanolamine (PE) (quantitatively the most sig- 3 membrane [ H] PC . In pulse-chase experiments, cytidine nificant phospholipids of eukaryotic cells) via the Ken- (200 N,M) also increased significantly the conversion of nedy pathway (Kennedy and Weiss, 1956 ; Pelech and [ 3H]choline to [ 3 H]PC during the chase period . When Vance, 1984 ; Vance, 1985) and also in the biosynthe- slices were incubated with this concentration of cytidine sis of phosphatidylinositol (Vance, 1985 ; Majerus, for 1 h, small (7%) but significant elevations were ob- 1992 ; Pike, 1992) . -
Nucleotide Metabolism Pathway: the Achilles' Heel for Bacterial Pathogens
REVIEW ARTICLES Nucleotide metabolism pathway: the achilles’ heel for bacterial pathogens Sujata Kumari1,2,* and Prajna Tripathi1,3 1National Institute of Immunology, New Delhi 110 067, India 2Present address: Department of Zoology, Magadh Mahila College, Patna University, Patna 800 001, India 3Present address: Institute of Molecular Medicine, Jamia Hamdard, New Delhi 110 062, India de novo pathway, the nucleotides are synthesized from Pathogens exploit their host to extract nutrients for their survival. They occupy a diverse range of host simple precursor molecules. In the salvage pathway, the niches during infection which offer variable nutrients preformed nucleobases or nucleosides which are present accessibility. To cause a successful infection a patho- in the cell or transported from external environmental gen must be able to acquire these nutrients from the milieu to the cell are utilized to form nucleotides. host as well as be able to synthesize the nutrients on its own, if required. Nucleotides are the essential me- tabolite for a pathogen and also affect the pathophysi- Purine biosynthesis pathway ology of infection. This article focuses on the role of nucleotide metabolism of pathogens during infection The purine biosynthesis pathway is universally conserved in a host. Nucleotide metabolism and disease pathoge- in living organisms (Figure 1). As an example, we here nesis are closely related in various pathogens. Nucleo- present the pathway derived from well-studied Gram- tides, purines and pyrimidines, are biosynthesized by positive bacteria Lactococcus lactis. In the de novo the de novo and salvage pathways. Whether the patho- pathway the purine nucleotides are synthesized from sim- gen will employ the de novo or salvage pathway dur- ple molecules such as phosphoribosyl pyrophosphate ing infection is dependent on various factors, like (PRPP), amino acids, CO2 and NH3 by a series of enzy- availability of nucleotides, energy condition and pres- matic reactions. -
Specific Cytotoxicity of Arabinosyl- Guanine Toward Cultured T
Specific Cytotoxicity of Arabinosyl- guanine toward Cultured T Lymphoblasts Buddy Ullman Department of Biochemistry, University of Kentucky Medical Center, Lexington, Kentucky 40536 David W. Martin, Jr. Departments ofMedicine and Biochemistry and Biophysics, University of California, San Francisco, California 94143 Abstract. Purine nucleoside phosphorylase T cells that are genetically deficient in PNP have suggested (PNP) deficiency in humans is associated with a severe that deoxyguanosine is the only PNP substrate which causes T cell immunodeficiency. To understand further and significant cytotoxicity (2). Coupled with the observation that exploit this T cell lymphospecificity, we have compared deoxyguanosine triphosphate (dGTP) accumulates in the the cytotoxicities and metabolism of deoxyguanosine, erythrocytes of PNP-deficient children (3) and in thymocytes that are exposed to deoxyguanosine (4), it appears that deox- the cytotoxic substrate of PNP and of arabinosylguanine, yguanosine is the cytotoxic substrate of PNP. In order to exert a deoxyguanosine analogue that is resistant to PNP its lymphotoxic effect, deoxyguanosine requires intracellular cleavage, in T cell (8402) and B cell (8392) lines in phosphorylation to the triphosphate level (5-9). dGTP inhibits continuous culture established from the same patient. the cytidine diphosphate reduction component of ribonucleotide In comparative growth rate experiments the T cells were reductase, depleting intracellular deoxycytidine triphosphate 2.3-fold and 400-fold more sensitive to growth inhibition (dCTP) pools to levels inadequate for the maintenance of by deoxyguanosine and arabinosylguanine, respectively, DNA synthesis (10). Cells that contain a ribonucleotide reduc- than were the B cells. Only the T cells, but not the B tase activity that is refractory to complete inhibition by dGTP cells, could phosphorylate in situ deoxyguanosine or (2) and nonreplicating peripheral blood lymphocytes (1 1) are arabinosylguanine to the corresponding triphosphate. -
Deoxyadenosine Triphosphate As a Mediator of Deoxyguanosine Toxicity in Cultured T Lymphoblasts
Deoxyadenosine triphosphate as a mediator of deoxyguanosine toxicity in cultured T lymphoblasts. G J Mann, R M Fox J Clin Invest. 1986;78(5):1261-1269. https://doi.org/10.1172/JCI112710. Research Article The mechanism by which 2'-deoxyguanosine is toxic for lymphoid cells is relevant both to the severe cellular immune defect of inherited purine nucleoside phosphorylase (PNP) deficiency and to attempts to exploit PNP inhibitors therapeutically. We have studied the cell cycle and biochemical effects of 2'-deoxyguanosine in human lymphoblasts using the PNP inhibitor 8-aminoguanosine. We show that cytostatic 2'-deoxyguanosine concentrations cause G1-phase arrest in PNP-inhibited T lymphoblasts, regardless of their hypoxanthine guanine phosphoribosyltransferase status. This effect is identical to that produced by 2'-deoxyadenosine in adenosine deaminase-inhibited T cells. 2'-Deoxyguanosine elevates both the 2'-deoxyguanosine-5'-triphosphate (dGTP) and 2'-deoxyadenosine-5'-triphosphate (dATP) pools; subsequently pyrimidine deoxyribonucleotide pools are depleted. The time course of these biochemical changes indicates that the onset of G1-phase arrest is related to increase of the dATP rather than the dGTP pool. When dGTP elevation is dissociated from dATP elevation by coincubation with 2'-deoxycytidine, dGTP does not by itself interrupt transit from the G1 to the S phase. It is proposed that dATP can mediate both 2'-deoxyguanosine and 2'-deoxyadenosine toxicity in T lymphoblasts. Find the latest version: https://jci.me/112710/pdf Deoxyadenosine Triphosphate as a Mediator of Deoxyguanosine Toxicity in Cultured T Lymphoblasts G. J. Mann and R. M. Fox Ludwig Institute for Cancer Research (Sydney Branch), University ofSydney, Sydney, New South Wales 2006, Australia Abstract urine of PNP-deficient individuals, with elevation of plasma inosine and guanosine and mild hypouricemia (3). -
Non-Enzymatic Synthesis of the Coenzymes, Uridine Diphosphate
N O N - E N Z Y M A T I C S Y N T H E S I S OF THE C O E N Z Y M E S , U R I D I N E D I P H O S P H A T E G L U C O S E A N D C Y T I D I N E D I P H O S P H A T E C H O L I N E , A N D O T H E R P H O S P H O R Y L A T E D M E T A B O L I C I N T E R M E D I A T E S A. M A R , J. D W O R K I N , and J. ORO* Department of Biochemical and Biophysical Sciences, University of Houston, Houston, TX 77004, U.S.A. (Received 3 November, 1986) Abstract. The synthesis of uridine diphosphate glucose (UDPG), cytidine diphosphate choline (CDP- choline), glucose-l-phosphate (G1P) and glucose-6-phosphate (G6P) has been accomplished under simulated prebiotic conditions using urea and cyanamide, two condensing agents considered to have been present on the primitive Earth. The synthesis of UDPG was carried out by reacting G1P and UTP at 70 °C for 24 hours in the presence of the condensing agents in an aqueous medium. CDP-choline was obtained under the same conditions by reacting choline phosphate and CTP. G1P and G6P were synthesized from glucose and inorganic phosphate at 70°C for 16 hours. -
31P NMR Study of Erythrocytes from a Patient with Hereditary Pyrimidine-5'-Nucleotidase Deficiency
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by UNL | Libraries University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Public Health Resources Public Health Resources 1983 31P NMR study of erythrocytes from a patient with hereditary pyrimidine-5'-nucleotidase deficiency M. S. Swanson University of Nebraska Medical Center C. R. Angle University of Nebraska Medical Center S. J. Stohs University of Nebraska Medical Center S. T. Wu University of Nebraska Medical Center J. M. Salhany University of Nebraska Medical Center See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/publichealthresources Part of the Public Health Commons Swanson, M. S.; Angle, C. R.; Stohs, S. J.; Wu, S. T.; Salhany, J. M.; Elliot, R. S.; and Markin, R. S., "31P NMR study of erythrocytes from a patient with hereditary pyrimidine-5'-nucleotidase deficiency" (1983). Public Health Resources. 140. https://digitalcommons.unl.edu/publichealthresources/140 This Article is brought to you for free and open access by the Public Health Resources at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Public Health Resources by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors M. S. Swanson, C. R. Angle, S. J. Stohs, S. T. Wu, J. M. Salhany, R. S. Elliot, and R. S. Markin This article is available at DigitalCommons@University of Nebraska - Lincoln: https://digitalcommons.unl.edu/ publichealthresources/140 Proc. Natd Acad. Sci. USA Vol. 80, pp. 169-172, January 1983 Biophysics 31P NMR study of erythrocytes from a patient with hereditary pyrimidine-5'-nucleotidase deficiency (intracellular pH/free Mg2+/Mg-NTP level) M. -
The Functional O-Mannose Glycan on A
RESEARCH ARTICLE The functional O-mannose glycan on a- dystroglycan contains a phospho-ribitol primed for matriglycan addition Jeremy L Praissman1†, Tobias Willer2,3,4,5†, M Osman Sheikh1†, Ants Toi6, David Chitayat7,8,9, Yung-Yao Lin10,11,12, Hane Lee13,14,15, Stephanie H Stalnaker1, Shuo Wang1, Pradeep Kumar Prabhakar1, Stanley F Nelson13,14,15, Derek L Stemple12, Steven A Moore16, Kelley W Moremen1,17, Kevin P Campbell2,3,4,5*, Lance Wells1,17* 1Complex Carbohydrate Research Center, University of Georgia, Athens, United States; 2Department of Molecular Physiology and Biophysics, Carver College of Medicine, University of Iowa, Iowa City, United States; 3Howard Hughes Medical Institute, University of Iowa, Iowa City, United States; 4Department of Neurology, Carver College of Medicine, University of Iowa, Iowa City, United States; 5Department of Internal Medicine, Carver College of Medicine, University of Iowa, Iowa City, United States; 6Department of Medical Imaging, Mount Sinai Hospital, Toronto, Canada; 7Division of Clinical and Metabolic Genetics, The Hospital for Sick Children, University of Toronto, Toronto, Canada; 8The Prenatal Diagnosis and Medical Genetics Program, Mount Sinai Hospital, Toronto, Canada; 9Department of Obstetrics and Gynecology, University of Toronto, Toronto, Canada; 10Blizard Institute, London, United Kingdom; 11Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, United Kingdom; 12Wellcome *For correspondence: kevin- Trust Genome Campus, Wellcome Trust Sanger Institute, -
Mechanistic Studies of the Class I Ribonucleotide Reductase From
Mechanistic Studies of the Class I Ribonucleotide Reductase from Escherichia coli by Erin Jelena Artin Submitted to the Department of Chemistry in partial fulfillment of the requirements for the degree of Doctor of Science in Biochemistry at the MASSACHUSETTS INSTITUTE OF TECHNOLOGY June 2006 c Massachusetts Institute of Technology 2006. All rights reserved. Author.................................................................... Department of Chemistry May 15, 2006 Certified by . Daniel S. Kemp Professor of Chemistry Accepted by............................................................... Robert W. Field Chairman, Department Committee on Graduate Students This doctoral thesis has been examined by a committee of the Department of Chemistry as follows: Professor Daniel S. Kemp . Committee Chair Professor Catherine L. Drennan. Professor Robert G. Griffin . 2 Mechanistic Studies of the Class I Ribonucleotide Reductase from Escherichia coli by Erin Jelena Artin Submitted to the Department of Chemistry on May 15, 2006, in partial fulfillment of the requirements for the degree of Doctor of Science in Biochemistry Abstract Ribonucleotide reductases (RNRs) catalyze the conversion of nucleotides to deoxynucleotides, providing the monomeric precursors required for DNA replication and repair. The class I RNRs are found in many bacteria, DNA viruses, and all eukaryotes including humans, and are composed of two homodimeric subunits: R1 and R2. RNR from Escherichia coli (E. coli) serves as the prototype of this class. R1 has the active site where nucleotide reduc- tion occurs, and R2 contains the diferric-tyrosyl radical (Y · ) cofactor essential for radical initiation on R1. The rate-determining step in E. coli RNR has recently been shown to be a physical step prior to generation of the putative thiyl radical (S · ) on C439. -
First Prebiotic Generation of a Ribonucleotide from Adenine, D– Ribose and Trimetaphosphate
Supplementary Material (ESI) for Chemical Communications This journal is (c) The Royal Society of Chemistry 2011 Supplementary information First Prebiotic Generation of a Ribonucleotide from Adenine, D– Ribose and Trimetaphosphate Graziano Baccolini, a* Carla Boga,a and Gabriele Michelettia a* Department of Organic Chemistry ‘A. Mangini’ ALMA MATER STUDIORUM– Università di Bologna, Viale del Risorgimento 4, 40136 Bologna Italy Fax: (+)39 051 2093654 E-mail: [email protected] Content 1. General Methods 2. Reaction between adenine, D–ribose and trisodium trimetaphosphate 3. Isomerisation of commercial β–adenosine 4. Reaction between guanine, D–ribose and trisodium trimetaphosphate Supplementary Material (ESI) for Chemical Communications This journal is (c) The Royal Society of Chemistry 2011 1. General Methods Starting reagents (adenine, D-ribose, and trisodium trimetaphosphate) are commercially available, as well as adenosine (9-β-D-Ribofuranosyladenine), adenosine-2’-phosphate hemihydrate (2’- Adenylic acid, 2’-AMP), adenosine-3’-monophosphate (3’-Adenylic acid, 3’-AMP), adenosine-5’- monophosphate (5’-AMP), and adenosine-3’,5’-cyclic monophosphate (3’,5’-AMP), used both as standard reagents for HPLC analyses and as comparison samples to identify the products formed during the reaction. Adenosine 2’,3’-cyclic monophosphate (2’,3’-cAMP) was obtained by acidification of an aqueous solution of its commercial sodium salt. NMR spectra were recorded on Varian Inova 300, Varian Mercury 400 or Varian Inova 600 MHz instruments. Chemical shifts are 1 referenced to external 3-(trimethylsilyl)propionic acid for H and in H2O, and to external standard 31 85% H3PO4 for P NMR. J values are given in Hz. Analytical HPLC analysis was carried out with a Merck-Hitachi Hitachi L-4200 UV-Vis detector on a Supelcosil LC-18-DB 5 μm 250x4.6 mm column at 25 °C. -
Direct Cyclic AMP Enzyme Immunoassay Kit
DetectX® Direct Cyclic AMP Enzyme Immunoassay Kit 1 Plate Kit Catalog Number K019-H1 5 Plate Kit Catalog Number K019-H5 Species Independent Sample Types Validated: Cell Lysates, Saliva, Urine, EDTA and Heparin Plasma, Tissue Culture Media Please read this insert completely prior to using the product. For research use only. Not for use in diagnostic procedures. www.ArborAssays.com K019-H WEB 210301 TABLE OF CONTENTS Background 3 Assay Principle 4 Related Products 4 Supplied Components, Storage Instructions 5 Other Materials Required and Precautions 6 Sample Types 7 Sample Preparation 7-8 Reagent Preparation - General 9 Reagent Preparation - Regular Format 10 Assay Protocol - Regular Format 11 Calc. of Results, Typical & Validation Data - Regular Format 12-13 Acetylated Protocol - Overview 14 Reagent Preparation - Acetylated Format 14-15 Assay Protocol - Acetylated 16 Calc. of Results, Typical & Validation Data - Acetylated Format 17-18 Validation Data - Regular and Acetylated Formats 19-21 Sample Values, Cross Reactivity & Interferents 22 Warranty & Contact Information 23 Plate Layout Sheet 24 ® 2 EXPECT ASSAY ARTISTRY™ K019-H WEB 210301 BACKGROUND Adenosine-3’,5’-cyclic monophosphate, or cyclic AMP (cAMP), C10H12N5O6P, is one of the most important second messengers and a key intracellular regulator. Discovered by Sutherland and Rall in 19571, it functions as a mediator of activity for a number of hormones, including epinephrine, glucagon, and ACTH2-4. Adenylate cyclase is activated by the hormones glucagon and adrenaline and by G protein. Liver adenylate cyclase responds more strongly to glucagon, and muscle adenylate cyclase responds more strongly to adrenaline. cAMP decomposition into AMP is catalyzed by the enzyme phosphodiesterase. -
Nucleotide Sugars in Chemistry and Biology
molecules Review Nucleotide Sugars in Chemistry and Biology Satu Mikkola Department of Chemistry, University of Turku, 20014 Turku, Finland; satu.mikkola@utu.fi Academic Editor: David R. W. Hodgson Received: 15 November 2020; Accepted: 4 December 2020; Published: 6 December 2020 Abstract: Nucleotide sugars have essential roles in every living creature. They are the building blocks of the biosynthesis of carbohydrates and their conjugates. They are involved in processes that are targets for drug development, and their analogs are potential inhibitors of these processes. Drug development requires efficient methods for the synthesis of oligosaccharides and nucleotide sugar building blocks as well as of modified structures as potential inhibitors. It requires also understanding the details of biological and chemical processes as well as the reactivity and reactions under different conditions. This article addresses all these issues by giving a broad overview on nucleotide sugars in biological and chemical reactions. As the background for the topic, glycosylation reactions in mammalian and bacterial cells are briefly discussed. In the following sections, structures and biosynthetic routes for nucleotide sugars, as well as the mechanisms of action of nucleotide sugar-utilizing enzymes, are discussed. Chemical topics include the reactivity and chemical synthesis methods. Finally, the enzymatic in vitro synthesis of nucleotide sugars and the utilization of enzyme cascades in the synthesis of nucleotide sugars and oligosaccharides are briefly discussed. Keywords: nucleotide sugar; glycosylation; glycoconjugate; mechanism; reactivity; synthesis; chemoenzymatic synthesis 1. Introduction Nucleotide sugars consist of a monosaccharide and a nucleoside mono- or diphosphate moiety. The term often refers specifically to structures where the nucleotide is attached to the anomeric carbon of the sugar component.