Emerging Regulatory Roles of Mitochondrial Sirtuins on Pyruvate Dehydrogenase Complex and the Related Metabolic Diseases: Review

Total Page:16

File Type:pdf, Size:1020Kb

Emerging Regulatory Roles of Mitochondrial Sirtuins on Pyruvate Dehydrogenase Complex and the Related Metabolic Diseases: Review Biomedical Research and Therapy, 7(2):3645-3658 Open Access Full Text Article Review Emerging regulatory roles of mitochondrial sirtuins on pyruvate dehydrogenase complex and the related metabolic diseases: Review Abolfazl Nasiri1,2, Masoud Sadeghi3, Asad Vaisi-Raygani2,4, Sara Kiani3, Zahra Aghelan1,2, Reza Khodarahmi3,5,* ABSTRACT The pyruvate dehydrogenase complex (PDC) is a multi-enzyme complex of the mitochondria that provides a link between glycolysis and the Krebs cycle. PDC plays an essential role in producing Use your smartphone to scan this acetyl-CoA from glucose and the regulation of fuel consumption. In general, PDC enzyme is reg- QR code and download this article ulated in two different ways, end-product inhibition and posttranslational modifications (moreex- tensive phosphorylation and dephosphorylation subunit E1). Posttranslational modifications of this enzyme are regulated by various factors. Sirtuins are the class III of histone deacylatases that catalyze 1Students Research Committee, protein posttranslational modifications, including deacetylation, adenosine diphosphate ribosyla- Kermanshah University of Medical tion, and deacylation. Sirt3, Sirt4, and Sirt5 are mitochondrial sirtuins that control the posttrans- Sciences, Kermanshah, Iran lational modifications of mitochondrial protein. Considering the comprehensive role of sirtuins in post-translational modifications and regulation of metabolic processes, the aim of this review isto 2 Department of Clinical Biochemistry, explore the role of mitochondrial sirtuins in the regulation of the PDC. PDC deficiency is a com- School of Medicine, Kermanshah mon metabolic disorder that causes pyruvate to be converted to lactate and alanine rather than to University of Medical Sciences, Kermanshah, Iran acetyl-CoA. because this enzyme is in the gateway of complete oxidation, glucose products enter- ing the Krebs cycle and resulting in physiological and structural changes in the organs. Metabolic 3Medical Biology Research Center, blockage such as ketogenic diet broken up by b-oxidation and producing acetyl-CoA can improve Kermanshah University of Medical the patients. Sirtuins play a role in the production of acetyl-CoA through oxidation of fatty acids Sciences, Kermanshah, Iran and other pathways. Thus, we hypothesize that the targets and bioactive compounds targeting 4Fertility and Infertility Research Center, mitochondrial sirtuins can be involved in the treatment of PDC deficiency. In general, this review Health Technology Institute, discusses the present knowledge on how mitochondrial sirtuins are involved in the regulation of Kermanshah University of Medical PDC as well as their possible roles in the treatment of PDC deficiency. Sciences, Kermanshah, Iran Key words: Pyruvate dehydrogenase complex deficiency, Mitochondrial Sirtuins, protein deacety- 5Department of Pharmacognosy and lation Biotechnology, Faculty of Pharmacy, Kermanshah University of Medical Sciences, Kermanshah, Iran INTRODUCTION enzymes have an important role in all mitochon- Correspondence The human pyruvate dehydrogenase (PD) is a multi- dria of higher eukaryotes. This complex is active in Reza Khodarahmi, Medical Biology aerobic conditions that require glucose decomposi- Research Center, Kermanshah University enzyme complex that is involved in the produc- of Medical Sciences, Kermanshah, Iran tion of nicotinamide adenine dinucleotide dehydro- tion to produce energy, and is suppressed when glu- Department of Pharmacognosy and genase (NADH), carbon dioxide (CO2), and acetyl- cose is in short supply. In general, this enzyme is Biotechnology, Faculty of Pharmacy, coenzyme A (CoA) by pyruvate decarboxylation. The regulated in two different ways, end-product inhi- Kermanshah University of Medical bition by acetyl CoA and NADH 12 and phospho- Sciences, Kermanshah, Iran common pyruvate dehydrogenase complex (PDC) has three main enzymes and five coenzymes 1–7. The rylation and dephosphorylation subunit E1, which Email: [email protected] are a non-phosphorylated active form and a phos- History three components enzymes PDC include pyruvate • Received: Aug 06, 2019 dehydrogenase (E1, a heterotetramer of two types, phorylated inactive form. However, its regulation • Accepted: Dec 23, 2019 with EC 1.2.4.1), dihydrolipoamide acetyltransferase is not fully understood. PDC deficiency is a mito- • Published: Feb 29, 2019 (E2, EC 2.3.1.12) and dihydrolipoamide dehydroge- chondrial defect, whose gene is encoded in the nu- DOI : 10.15419/bmrat.v7i2.591 nase (E3, EC 1.8.1.4,) 8,9. E3 binding protein (E3BP) cleus and the most identified motive over neonatal en- is an additional subunit that exists in humans, and cephalopathies with primary lactic acidosis 13. PDC integrates stable E3 into the E2 core of each assem- deficiency may be triggered by the defects of E1a, Copyright bly 9–11. Each assembly consists of five coenzymes, E1b, E2, or E3 subunits. This deficiency is often due © Biomedpress. This is an open- including thiamine pyrophosphat, lipoic acid, CoA, to alteration in the E1 gene located on X chromo- access article distributed under the flavin adenine dinucleotide, and nicotinamide ade- some; all other causes are due to defects in recessive terms of the Creative Commons + 14–16 Attribution 4.0 International license. nine dinucleotide (NAD ). PDC and its regulatory genes . Several strategies have been reported to Cite this article : Nasiri A, Sadeghi M, Vaisi-Raygani A, Kiani S, Aghelan Z, Khodarahmi R. Emerging regula- tory roles of mitochondrial sirtuins on pyruvate dehydrogenase complex and the related metabolic diseases: Review. Biomed. Res. Ther.; 7(2):3645-3658. 3645 Biomedical Research and Therapy, 7(2):3645-3658 be useful in the treatment of PDC deficiency. These processes, generally through posttranslational modi- encompass the use of ketogenic diets (KD), adminis- fications 33,34. Posttranslational modifications are in- tration of dichloroacetate and thiamine supplements. volved in the regulation of PDC, but their regula- Unfortunately, none of these is generalized 14–16 . tion is not well-defined. Considering the comprehen- Sirtuins are protected enzymes in most species, in- sive role of sirtuins in post-translational modifications cluding humans and bacteria. They rely on NAD+ for and the regulation of metabolic processes, this review their reaction (Figure 1). Recently, it has been ob- was conducted to determine whether sirtuins are in- served that sirtuins can catalyze reactions including volved in the regulation of PDC or not. Deficiency deacetylation, adenosine diphosphate (ADP) ribosy- of PDC causes pyruvate to be converted into lactate 17 lation, and deacylation . The mammalian deacety- and alanine instead of acetyl-CoA because this en- lases are divided into four classes I, II, III, and IV, zyme is in the gateway of complete oxidation of glu- 18 based on sequence homology . Classes I, II, and IV cose products entering the Krebs cycle. Metabolic mammalian deacetylases include enzymes that con- blockage such as ketogenic diet is broken up by b- tain zinc as a cofactor in their structure. The zinc co- oxidation, and production of acetyl-CoA can improve factor plays a role in activating water molecules as a the condition. The therapies used for the treatment nucleophile and hydrolysis of the acetamide bond in of this deficiency have not been fully successful. Sir- e 19 acetate and lysine -amino group . Class III mam- tuins are involved in the production of acetyl-CoA malian deacetylase proteins, which are called sirtuins, through oxidation of fatty acids and other pathway have zinc molecules in their structure; however, the complexes. Thus, pharmacological targets and bioac- zinc elements are not directly involved in the reac- tive compounds targeting mitochondrial sirtuins can tion. Instead, Sirtuins utilize nicotinamide adenine be involved in the treatment of PDC deficiency. This + dinucleotide (NAD ) cosubstrate as a cofactor to pro- review discusses the present knowledge on how mito- duce ADP-ribose as a nucleophile 20. ADP-ribose re- chondrial sirtuins is involved in the regulation of PDC mains for ADP-ribosylation of the substrate, alter- as well as their possible roles in the treatment of PDC natively on deacetylation, but this reaction is likely deficiency. to stay aside response 21. In mammals, seven sirtu- ins have been discovered, ranging from Sirt1 to Sirt7. PDC AND ITS REGULATORY Sirt1 and Sirt2 are present both in the nucleus and in FACTORS the cytoplasm, while Sirt6 and Sirt7 are only seen in PDC catalyzes the oxidative decarboxylation reaction the nucleus. Sirt3, Sirt4, and Sirt5 are known as mi- of pyruvate to acetyl-CoA. The function of this en- tochondrial Sirtuins (Figure 2) 22. Based on phylo- genetic conservation of the core domain, sirtuins are zyme is irreversible and has a regulatory role in the categorized into five subclasses (I–IV and U). Subclass entry of glucose products into mitochondria. This en- I contains Sirt1, Sirt2, and Sirt3 with deacetylase ac- zyme interlinks glycolysis to the Krebs cycle, and sub- tivity. Subclass II sirtuins include Sirt4, which exhibits sequently to the respiratory chain, therefore, it can be ADP-ribosyltransferase activity 23,24. Subclass III sir- an important for the synthesis of adenosine triphos- tuins include Sirt5 that exhibits deacylase activity 25 phate (ATP) by the transfer of electrons (NADH, 35 and weak deacetylase activity 26. Subclass IV sirtu- FADH) to the respiratory chain . In lipogenic tis- ins contains Sirt6
Recommended publications
  • Elevation of Cardiac Glycolysis Reduces Pyruvate Dehydrogenase but Increases Glucose Oxidation
    University of Louisville ThinkIR: The University of Louisville's Institutional Repository Electronic Theses and Dissertations 5-2011 Elevation of cardiac glycolysis reduces pyruvate dehydrogenase but increases glucose oxidation. Qianwen Wang University of Louisville Follow this and additional works at: https://ir.library.louisville.edu/etd Recommended Citation Wang, Qianwen, "Elevation of cardiac glycolysis reduces pyruvate dehydrogenase but increases glucose oxidation." (2011). Electronic Theses and Dissertations. Paper 1519. https://doi.org/10.18297/etd/1519 This Doctoral Dissertation is brought to you for free and open access by ThinkIR: The University of Louisville's Institutional Repository. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of ThinkIR: The University of Louisville's Institutional Repository. This title appears here courtesy of the author, who has retained all other copyrights. For more information, please contact [email protected]. ELEVATION OF CARDIAC GLYCOLYSIS REDUCES PYRUVATE DEHYDROGENASE BUT INCREASES GLUCOSE OXIDATION By Qianwen Wang B.S., Guangdong Medical College of China, 1999 M.S., University of Louisville, 2006 A Dissertaion Submitted to the Faculty of the Graduate School of the University of Louisville In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Department of Physiology and Biophysics University of Louisville, School of Medicine Louisville, Kentucky May 2011 ELEVATION OF CARDIAC GLYCOLYSIS REDUCES PYRUVATE DEHYDROGENASE BUT INCREASES GLUCOSE OXIDATION By Qianwen Wang B.S., Guangdong Medical College of China, 1999 M.S., University of Louisville, 2006 A Dissertation Approved on March 28, 2011 by the following Dissertation Committee: Dissertation Director-Paul N. Epstein, Ph.D. William B.
    [Show full text]
  • Cellular Respiration
    Cellular Respiration Glucose is the preferred carbohydrate of cells. In solution, it can change from a linear chain to a ring. Energy is stored in the bonds of the carbohydrates. Breaking these bonds releases that energy. Crushing sugar crystals creates tiny electrical fields that give off invisible ultraviolet light. The wintergreen chemical (methyl salicylate) gets excited by these excited electrons and fluoresces in a visible blue wavelength. This phenomenon is called triboluminescence. Contents 1 Glycolysis 2 Fermentation 3 The Preparatory Reaction 4 Mitochondria 5 Aerobic Respiration 6 Metabolic Pool Glycolysis Glucose is the preferred carbohydrate of cells. Glycolysis (glyco – sugar; lysis – splitting) is a universal process of all cells that occurs in the cytosol whereby the glucose (a 6-carbon sugar) is split into two pyruvate (a 3-carbon molecule) molecules to generate ATP and reduced NADH. ATP (adenosine triphosphate) is the energy currency of the cell that stores chemical energy in 3 high energy phosphate bonds. NADH (reduced nicotinamide adenine dinucleotide) is a high energy electron carrier that acts as a coenzyme in reactions and as a rechargeable battery of sorts. The uncharged state that is not carrying high energy electrons is called NAD+. CC-BY-NC-SA | Jeremy Seto | New York City College of Technology | 1 Cellular Respiration Glycolysis is the splitting of glucose into 2 pyruvate molecules to generate 2 NADH and 2ATP molecules. ATP contains 3 high energy phosphates and acts as cellular energy currency. NADH is the reduced form of NAD+. The High energy electrons associated with the reduced form come with a H atom.
    [Show full text]
  • CELLULAR RESPIRATION Applied Medical Chemistry II Course
    CELLULAR RESPIRATION Applied Medical Chemistry II Course Aim of the lecture This lecture discuss the steps of cellular respiration and its regulation Maye M. Ragab Super Visor / Dr. Neveen Introduction individual enzymic reactions were analyzed in an effort to explain the mechanisms of catalysis. However, in cells, these reactions rarely occur in isolation, but rather are organized into multistep sequences called pathways). In a pathway, the product of one reaction serves as the substrate of the subsequent reaction. Different pathways can also intersect, forming an integrated and purposeful network of chemical reactions. These are collectively called metabolism, which is the sum of all the chemical changes occurring in a cell, a tissue, or the body. Most pathways can be classified as either catabolic (degradative) or anabolic (synthetic). Anabolic pathways • form complex end products from simple precursors, for example, the synthesis of the polysaccharide, glycogen, from glucose. • Anabolic reactions require energy (are endergonic), which is generally provided by the breakdown of ATP to (ADP) and inorganic phosphate (Pi). • Anabolic reactions often involve chemical reductions in which the reducing power is most frequently provided by the electron donor NADPH . Catabolic reactions • break down complex molecules, such as proteins, polysaccharides, and lipids, to a few simple molecules, for example, CO2, NH3 (ammonia), and water. • Catabolic reactions serve to capture chemical energy in the form of (ATP) from the degradation of energy-rich fuel molecules. Energy generation by degradation of complex molecules occurs in three stages as in the following figure : [Note: Catabolic pathways are typically oxidative, and require coenzymes such as NAD+.] [Note: Pathways that regenerate a component are called cycles.] 1 2 Overview Of Glycolysis : • The glycolytic pathway is employed by all tissues for the breakdown of glucose to provide energy (in the form of ATP) and intermediates for other metabolic pathways.
    [Show full text]
  • The PEP–Pyruvate–Oxaloacetate Node As the Switch Point for Carbon flux Distribution in Bacteria
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library FEMS Microbiology Reviews 29 (2005) 765–794 www.fems-microbiology.org The PEP–pyruvate–oxaloacetate node as the switch point for carbon flux distribution in bacteria Uwe Sauer a, Bernhard J. Eikmanns b,* a Institute of Biotechnology, ETH Zu¨rich, 8093 Zu¨rich, Switzerland b Department of Microbiology and Biotechnology, University of Ulm, 89069 Ulm, Germany Received 18 August 2004; received in revised form 27 October 2004; accepted 1 November 2004 First published online 28 November 2004 We dedicate this paper to Rudolf K. Thauer, Director of the Max-Planck-Institute for Terrestrial Microbiology in Marburg, Germany, on the occasion of his 65th birthday Abstract In many organisms, metabolite interconversion at the phosphoenolpyruvate (PEP)–pyruvate–oxaloacetate node involves a struc- turally entangled set of reactions that interconnects the major pathways of carbon metabolism and thus, is responsible for the dis- tribution of the carbon flux among catabolism, anabolism and energy supply of the cell. While sugar catabolism proceeds mainly via oxidative or non-oxidative decarboxylation of pyruvate to acetyl-CoA, anaplerosis and the initial steps of gluconeogenesis are accomplished by C3- (PEP- and/or pyruvate-) carboxylation and C4- (oxaloacetate- and/or malate-) decarboxylation, respectively. In contrast to the relatively uniform central metabolic pathways in bacteria, the set of enzymes at the PEP–pyruvate–oxaloacetate node represents a surprising diversity of reactions. Variable combinations are used in different bacteria and the question of the sig- nificance of all these reactions for growth and for biotechnological fermentation processes arises.
    [Show full text]
  • In Vivo Assessment of Pyruvate Dehydrogenase Flux in the Heart Using Hyperpolarized Carbon-13 Magnetic Resonance
    In vivo assessment of pyruvate dehydrogenase flux in the heart using hyperpolarized carbon-13 magnetic resonance Marie A. Schroeder, Lowri E. Cochlin, Lisa C. Heather, Kieran Clarke, George K. Radda, and Damian J. Tyler* Cardiac Metabolism Research Group, Department of Physiology, Anatomy, and Genetics, University of Oxford, Oxford OX1 3PT, United Kingdom Communicated by Robert G. Shulman, Yale University, New Haven, CT, June 19, 2008 (received for review January 15, 2008) The advent of hyperpolarized 13C magnetic resonance (MR) has substrate composition can alter the phosphorylation state and provided new potential for the real-time visualization of in vivo thus activity of the PDH enzyme complex (7). Elevated insulin metabolic processes. The aim of this work was to use hyperpolar- concentrations are thought to stimulate PDP acutely, thereby ized [1-13C]pyruvate as a metabolic tracer to assess noninvasively dephosphorylating and activating PDH (9). The relative activi- the flux through the mitochondrial enzyme complex pyruvate ties of PDK and PDP determine the proportion of PDH that is dehydrogenase (PDH) in the rat heart, by measuring the produc- in the active dephosphorylated form. ؊ 13 tion of bicarbonate (H CO3 ), a byproduct of the PDH-catalyzed The link between PDH regulation and disease has made the conversion of [1-13C]pyruvate to acetyl-CoA. By noninvasively assessment of substrate selection and PDH activity important ؊ 13 observing a 74% decrease in H CO3 production in fasted rats benchmarks in the study of heart disease. To date, measurement compared with fed controls, we have demonstrated that hyper- of cardiac PDH activity has been performed with invasive 13 polarized C MR is sensitive to physiological perturbations in PDH biochemical assays, whereas substrate selection has been mon- 13 flux.
    [Show full text]
  • Pyruvate Ferredoxin Oxidoreductase from the Hyperthermophilic
    Proc. Natl. Acad. Sci. USA Vol. 94, pp. 9608–9613, September 1997 Biochemistry Pyruvate ferredoxin oxidoreductase from the hyperthermophilic archaeon, Pyrococcus furiosus, functions as a CoA-dependent pyruvate decarboxylase (archaeayaldehydeydecarboxylationy2-keto acidythiamine pyrophosphate) KESEN MA*, ANDREA HUTCHINS*, SHI-JEAN S. SUNG†, AND MICHAEL W. W. ADAMS*‡ *Center for Metalloenzyme Studies, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602; and †Institute of Tree Root Biology, U.S. Department of Agriculture–Forest Service, Athens, GA 30602 Communicated by Gregory A. Petsko, Brandeis University, Waltham, MA, June 17, 1997 (received for review June 1, 1996) ABSTRACT Pyruvate ferredoxin oxidoreductase (POR) hyperthermophilic archaea and these are involved in peptide has been previously purified from the hyperthermophilic fermentation. They use 2-ketoglutarate (KGOR) (11), in- archaeon, Pyrococcus furiosus, an organism that grows opti- dolepyruvate (IOR) (12), and 2-ketoisovalerate (VOR) (13) as mally at 100°C by fermenting carbohydrates and peptides. The substrates, and function to oxidatively decarboxylate the 2- enzyme contains thiamine pyrophosphate and catalyzes the keto acids generated by the transamination of glutamate, oxidative decarboxylation of pyruvate to acetyl-CoA and CO2 aromatic amino acids, and branched chain amino acids, re- and reduces P. furiosus ferredoxin. Here we show that this spectively, to the corresponding CoA derivative (13). enzyme also catalyzes the formation of acetaldehyde from The growth of hyperthermophilic archaea such as P. furiosus pyruvate in a CoA-dependent reaction. Desulfocoenzyme A is also unusual in that it is dependent upon tungsten (14), a substituted for CoA showing that the cofactor plays a struc- metal seldom used in biological systems (15).
    [Show full text]
  • The Citric Acid Cycle Also Known As Tricarboxylic Acid Cycle TCA Krebs Cycle
    ATP-ADP Translocase The flows of ATP and ADP are coupled (ADP enters only if ATP exits Highly abundant (14% of IMM proteins) Contains a single nucleotide-binding site (alternates) Similar affinity to ATP and ADP Endergonic (25% of ETC) Inhibition leads to subsequent inhibition of cellular respiration For every 2 electrons passing: 4H+ (complex I); 0H+ (complex II); 4H+ (complex III), 2H+ (complex IV) The citric acid cycle also known as Tricarboxylic acid cycle TCA Krebs cycle Lippincott chapter 9 Krebs cycle is the final pathway where the oxidative metabolism of carbohydrates, amino acids, and fatty acids convert their carbon skeletons to CO2. Most of the body's catabolic pathways converge on the TCA cycle (C3) From glycolysis to TCA Cycle Oxidative decarboxylation of pyruvate (C2) In the mitochondrial matrix, pyruvate undergoes oxidative decarboxylation to form acetyl CoA. TCA Cycle Summary From Pyruvate to Acetyl Co-A Pyruvate Pyruvate dehydrogenase complex (a multienzyme Dehydrogenase complex) The Formation of Acetyl CoA from Pyruvate • Irreversible reaction • Pyruvate Dehydrogenase complex: large, complex of three kinds of enzymes • Five coenzymes: – thiamine pyrophosphate (TPP), – lipoic acid, – FAD – CoA – NAD+. • Two additional enzymes regulate its activity Pyruvate Decarboxylation Steps Step 1: Decarboxylation Step 2: Oxidation Lipoic acid is attached to the enzyme by amide bond lipoamide Can be oxidized or reduced Step 3: Transfer of the resultant acetyl group to CoA Oxidation Conversion of pyruvate into acetyl CoA consists of three steps: decarboxylation, oxidation, and transfer of the resultant acetyl group to CoA. The mechanism of the pyruvate dehydrogenase reaction is more complex than is suggested by its relatively simple stoichiometry.
    [Show full text]
  • BSC 2085: Glycolysis and Cellular Respiration
    BSC 2085: Glycolysis and Cellular Respiration BACKGOUND INFORMATION: You should know this material before you begin studying Glycolysis and Cellular Respiration: I. What is the function of mitochondria? a. Production of ATP, a molecule that stores and releases energy for cells to use. II. Key Molecules that are involved during Cellular Respiration: a. ATP: Adenosine Triphosphate, a carrier of energy b. ADP: Adenosine Diphosphate, the molecule that is produced when one phosphate group leaves from ATP c. NAD: Nicotinamide Adenine Dinucleotide, a coenzyme that removes Hydrogen ions from a reaction. Once the reaction occurs, NAD becomes NADH. d. FAD: Flavin Adenine Dinucleotide, a regulated coenzyme that removes Hydrogen ions from a reaction. Once the reaction occurs, FADH becomes FADH2. III. Cellular Respiration is a process where the cells of the body produce ATP. a. Each step of Cellular Respiration will produce ATP molecules. b. Occurs in three steps: i. Glycolysis: Breakdown of Glucose into Pyruvate. This takes place in the cytosol. ii. Citric Acid Cycle: Breakdown of Acetyl Co-A and Carbon Dioxide. This takes place in the mitochondrial matrix. iii. Oxidative Phosphorylation: Generation of ATP. This takes place in the inner mitochondrial membrane. IV. There are many processes that occur in the cells that aid in the production of ATP, the end result of Cellular Respiration. The most important factor to remember during this process is that these steps have to occur in order, or in other words; the end result of one process begins or starts the second process. 1 Developed by The Learning Commons at Tallahassee Community College The Cell In the Cytosol: Glucose, a six-carbon chain sugar, is broken down into two three-carbon chain molecules, pyruvate.
    [Show full text]
  • Energy Metabolism in Eukaryotes Biochemistry and Evolution Of
    Biochemistry and Evolution of Anaerobic Downloaded from Energy Metabolism in Eukaryotes Miklós Müller, Marek Mentel, Jaap J. van Hellemond, Katrin Henze, Christian Woehle, Sven B. Gould, Re-Young Yu, Mark van der Giezen, Aloysius G. M. Tielens and William F. Martin Microbiol. Mol. Biol. Rev. 2012, 76(2):444. DOI: http://mmbr.asm.org/ 10.1128/MMBR.05024-11. Updated information and services can be found at: http://mmbr.asm.org/content/76/2/444 on June 18, 2012 by UNIVERSITAETS- UND LANDESBIBLIOTHEK DUESSELDORF These include: SUPPLEMENTAL MATERIAL http://mmbr.asm.org/content/suppl/2012/05/23/76.2.444.DC1.ht ml REFERENCES This article cites 571 articles, 205 of which can be accessed free at: http://mmbr.asm.org/content/76/2/444#ref-list-1 CONTENT ALERTS Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this article), more» Information about commercial reprint orders: http://journals.asm.org/site/misc/reprints.xhtml To subscribe to to another ASM Journal go to: http://journals.asm.org/site/subscriptions/ Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes Downloaded from Miklós Müller,a Marek Mentel,b Jaap J. van Hellemond,c Katrin Henze,d Christian Woehle,d Sven B. Gould,d Re-Young Yu,d Mark van der Giezen,e Aloysius G. M. Tielens,c and William F. Martind The Rockefeller University, New York, New York, USAa; Department of Biochemistry, Faculty of Natural Sciences, Comenius University, Bratislava, Slovakiab; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center,
    [Show full text]
  • Genome Sequence and Gene Compaction of the Eukaryote
    letters to nature ................................................................. The gradual increase in G + C content at the core centre described in Genome sequence and gene chromosome I (chrI)11 exists in all the chromosomes (maximum 51.0%). The 1,997 protein-coding DNA sequences (CDSs) repre- compaction of the eukaryote sent about 90% of the chromosome cores, as a result of generally short intergenic regions (see Supplementary Information). Gene parasite Encephalitozoon cuniculi density is slightly lower than that observed in the nucleomorph genome of the cryptomonad Guillardia theta13. Only about 44% of MichaeÈl D. Katinka*, Simone Duprat*, Emmanuel Cornillot², the CDSs are assigned to functional categories and about 6% to Guy MeÂteÂnier², Fabienne Thomarat³,GeÂrard Prensier², ValeÂrie Barbe*, conserved hypothetical proteins (Fig. 1). In contrast to the nucleo- Eric Peyretaillade², Philippe Brottier*, Patrick Wincker*, morph genome13, no overlapping of CDSs with predicted functions FreÂdeÂric Delbac², Hicham El Alaoui², Pierre Peyret², William Saurin*, was revealed. Structural or functional clusters are rare and never Manolo Gouy³, Jean Weissenbach* & Christian P. VivareÁs² composed of more than two CDSs (for example, histones H3 and H4 on chrIX). Genome compaction can also be related to gene * Genoscope, UMR CNRS 8030, CP 5706, 91057 Evry cedex, France shortening, as indicated by the length distribution of all potential ² Parasitologie MoleÂculaire et Cellulaire, Laboratoire de Biologie des Protistes, proteins (Fig. 2a). The mean and median lengths of all potential UMR CNRS 6023, Universite Blaise Pascal, 63177 AubieÁre cedex, France E. cuniculi proteins are only 359 and 281 amino acids, respectively. ³ Laboratoire de BiomeÂtrie et Biologie Evolutive, UMR CNRS 5558, We compared the lengths of 350 proteins with Saccharomyces Universite Lyon I, 69622 Villeurbanne cedex, France cerevisiae homologues (Fig.
    [Show full text]
  • Glucose and Pyruvate Catabolism in Litomosoides Carinii
    Parasitology (1984), 89, 229-244 229 With 1 figure in the text Glucose and pyruvate catabolism in Litomosoides carinii TH. RAMP and P. KOHLER Department of Parasitology, University of Zurich, Winterthurerstrasse 266a, 8057 Zurich, Switzerland (Accepted 17 January 1984) SUMMARY The filarial worm Litomosoides carinii showed a rapid uptake of glucose during in vitro incubation. This uptake proceeded linearly with time, and was significantly higher under aerobic compared to anoxic conditions. Under an atmosphere of nitrogen the worms converted glucose almost quantitatively to lactate, whereas in the presence of oxygen appreciable quantities of acetate, acetoin and CO2, in addition to lactate, were formed. Although aerobically only 73 % of the carbohydrate carbon could be accounted for by the latter products as well as by a net glycogen synthesis, attempts to identify other compounds presumed to be derived from glucose metabolism have been unsuccessful. The complete sequence of the glycolytic enzymes was detected in particulate-free cytosolic extracts of the filarial worm. With the exception of 6-phosphofructo- kinase, all glycolytic enzyme activities were considerably higher than those reported for rat liver. In addition, L. carinii possesses the entire set of enzymes catalysing the eight successive reaction steps of the tricarboxylic acid cycle. On a mitochondrial protein basis, the specific activities of these enzymes were similar to those present in rat liver. Various enzymatic activities of the mitochondrial respiratory chain were detected in the parasite. These include low levels of NADH and cyto- chrome c oxidases, but a high activity value for NADH dehydrogenase. Cell-free extracts and the mitochondrial fraction of the worms were found to exhibit an enzyme capable of catalysing the decarboxylation of pyruvate.
    [Show full text]
  • Brain Research Bulletin 133 (2017) 12–30
    Brain Research Bulletin 133 (2017) 12–30 Contents lists available at ScienceDirect Brain Research Bulletin journal homepage: www.elsevier.com/locate/brainresbull Research report Metabolic Dysfunction in Parkinson’s Disease: Bioenergetics, Redox MARK Homeostasis and Central Carbon Metabolism Annadurai Anandhana,b,1, Maria S. Jacomea,1,2, Shulei Leic, Pablo Hernandez-Francoa,b, ⁎ Aglaia Pappad, Mihalis I. Panayiotidise, Robert Powersb,c, Rodrigo Francoa,b, a School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68516, United States b Redox Biology Center, University of Nebraska-Lincoln, Lincoln, NE 68503, United States c Department of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68503, United States d Department of Molecular Biology and Genetics, Democritus University of Thrace, University Campus, Dragana, 68100 Alexandroupolis, Greece e School of Life Sciences, Heriot-Watt University, Edinburgh EH14 4AS, Scotland, UK ARTICLE INFO ABSTRACT Keywords: The loss of dopaminergic neurons in the substantia nigra pars compacta (SNpc) and the accumulation of protein Neurodegeneration inclusions (Lewy bodies) are the pathological hallmarks of Parkinson’s disease (PD). PD is triggered by genetic Glycolysis alterations, environmental/occupational exposures and aging. However, the exact molecular mechanisms Glucose linking these PD risk factors to neuronal dysfunction are still unclear. Alterations in redox homeostasis and TCA cycle bioenergetics (energy failure) are thought to be central components of neurodegeneration that contribute to the Oxidative stress impairment of important homeostatic processes in dopaminergic cells such as protein quality control Bioenergetics Mitochondria mechanisms, neurotransmitter release/metabolism, axonal transport of vesicles and cell survival. Importantly, both bioenergetics and redox homeostasis are coupled to neuro-glial central carbon metabolism.
    [Show full text]